Sequence of DPV African cassava mosaic virus
African cassava mosaic virus DNA-A, clone wcass4-3
ACC No: AM502340
Dated: 2007-06-17 | Length: 2780 | CRC: 567967602
ID AM502340; SV 1; circular; genomic DNA; STD; VRL; 2780 BP.
XX
AC AM502340;
XX
DT 17-JUN-2007 (Rel. 92, Created)
DT 17-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE African cassava mosaic virus DNA-A, clone wcass4-3
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KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein.
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OS African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2780
RA Stanley J.;
RT ;
RL Submitted (16-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Stanley J., Department of Disease and Stress Biology, John Innes Centre,
RL Colney Lane, Norwich NR74 7UH, UNITED KINGDOM.
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RN [2]
RA Sserubombwe W.S., Briddon R.W., Baguma Y.K., Ssemakula G.N., Bull S.,
RA Bua A., Otim-Nape G.W., Stanley J.;
RT "Diversity of begomoviruses associated with mosaic disease of cultivated
RT cassava (Manihot esculenta Cranz) and its wild relative (Manihot glaziovii)
RT in Uganda.";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="African cassava mosaic virus"
FT /specific_host="Manihot glaziovii"
FT /mol_type="genomic DNA"
FT /country="Uganda:Rakai"
FT /clone="wcass4-3"
FT /virion
FT /db_xref="taxon:10817"
FT CDS 135. .476
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAM59429.1"
FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGASKTELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT QKAHDVQDV"
FT CDS 295. .1071
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAM59430.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH
FT RVGKRFCIKSIYILGKIWMDENVKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNMFDN
FT EPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYV
FT NHTENALLVYMACTHASNPVYATLKIRIYFYDSIGN"
FT CDS complement(1068. .1472)
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAM59431.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHLQRPFLLNQDI
FT ITVQVRFNHNLRKELGIHKCFLDFQIWTTLQPQTGLFLRVFRYQVIKYLDNIGVISINN
FT VIRAADHVLFNVIANTIECQLTHEIKFNVY"
FT CDS complement(1213. .1620)
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAM59432.1"
FT /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLHI
FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTLPAEPGHHNSPGSIQSQ
FT PEEGAGDSQMFSRLPDLDDLTASDWSFLKGL"
FT CDS complement(1529. .2605)
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="CAM59433.1"
FT /translation="MRTPRFRIQAKNVFLTYPKCSLPKEHLLSFIQTLSLPSNPKFIKI
FT CRELHQNGEPHLHALIQFDPKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD
FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT LNSNLDRIFQEPPAPYVSPFPCSSFDQVPVEIEEWVADNVRDSAARPWRPNSIVIEGDS
FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEERQEALKAWALKNAIFITLTEPLY
FT SGSNQSQSQTIQEARHPA"
FT CDS complement(2161. .2571)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAM59434.1"
FT /translation="MSFSHTQSVLYPKNTYCHSFKHSLSHQTLSSLKSVESCIRMGNLT
FT CMPSSNSTPKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTETPSNGDNF
FT RSMDDLLEADNNQRMMLTPKRLTAAVSQKLLM"
XX
SQ Sequence 2780 BP; 744 A; 552 C; 694 G; 790 T; 0 other;
am502340 Length: 2780 17-JUN-2007 Type: N Check: 5606 ..
1 accggttggc cccgccccct ttaatgtggt ccccgcgcac atacgtatgt
51 cggccaatca tgtagtagct gtaaaggttg tgtattagtg gtgggccact
101 atatacttgc aggcgaagtt gtggctagtg cgcaatgtgg gatccactgg
151 tgaatgagtt tccagactcg gtgcatgggc ttaggtgtat gcttgcaatt
201 aaatatttgc aggccttaga ggatacatac gagcccagta ctttgggcca
251 cgatctggtt agggatctag tctcagttat cagggctcgt aattatgtcg
301 aagcgaccag gagatatcat catttccact ccaggctcca aggtgcgtcg
351 aagactgaac ttcgacagcc catacaggaa ccgtgctact gcccccactg
401 tccacgtcac aaatcgaaaa cgggcctgga tgaacaggcc catgtacaga
451 aagcccatga tgtacaggat gtatagaagc ccagacatac ctaggggctg
501 tgaaggccca tgtaaggtcc agtcgtttga gcagagggat gatgtgaagc
551 accttggtat ctgtaaggtg attagtgatg tgacgcgtgg gcctgggctg
601 acacacaggg tcggaaagag gttttgtatc aagtccattt acattcttgg
651 taagatctgg atggatgaaa atgttaagaa gcagaatcac actaataatg
701 tgatttttta cctgcttagg gatagaaggc cttatggcaa tgcgccccaa
751 gactttgggc agatatttaa catgtttgat aatgagccca gtactgcaac
801 aattaagaac gatttgaggg ataggtttca ggtgttgagg aaatttcatg
851 ccactgtcgt tggtggtcca tctggcatga aggagcaggc gttggtgaaa
901 aggttttaca ggttgaatca tcacgtgaca tacaatcatc aggaggcagg
951 gaagtatgtg aatcacacag agaatgcttt gcttgtgtac atggcatgta
1001 ctcatgcctc caatcctgta tatgcgacgt tgaaaatacg tatatacttc
1051 tatgacagta ttggcaatta ataaacattg aattttattt catgagtcaa
1101 ctgacactca atagtgttgg caattacatt gaacaaaaca tgatcagcag
1151 ctctaattac attattaatt gagataacac ctatattatc caagtattta
1201 attacttggt atctaaagac ccttaagaaa agaccagtct gaggctgtaa
1251 ggtcgtccag atctggaagt cgagaaaaca tttgtgaatc cccagctcct
1301 tcctcaggtt gtgattgaat cgaacctgga ctgttatgat gtcctggttc
1351 agcaggaagg gtcgttgtag gtgcctggtg attgtgaaat acaggggatt
1401 gtttatttcc caggtataca cgccattcat tgcttgagga gcagtgatga
1451 gttcccctgt gcgtaaatcc atgattggag cagttgatat ggaggtaata
1501 tgaacagcca cagacaagat ccactctcct acgccggatg gcgcgcttct
1551 tgaattgtct gtgattgact ttgattggaa cctgagtaga gtggttctgt
1601 gagggtgatg aagattgcat tctttaatgc ccaggccttt agcgcttctt
1651 gcctttcctc gtctaggaac tctttatagg acgaggtagg tcctggattg
1701 cagaggaaga tagtgggaat tccaccttta atttgaacgg gtttcccgta
1751 tttcgtgttg gattgccagt ccctctggga ccccataaat tccttaaagt
1801 gctttaggta gtggggatcg acgtcatcaa tgacgttgta ccaggcagca
1851 ttattgaaga cctttggact aaggtccagg tgtccacaca ggtaattgtg
1901 tgggcctaaa gatctggccc atatcgtctt ccctgttctg ctatcacctt
1951 ctatgacaat actattgggt ctccatggcc gcgcagcgga atccctaaca
2001 ttatcagcga cccattcttc aatttcaaca ggaacttggt caaaggaaga
2051 acatgggaag ggagaaacat aaggagccgg tggctcctgg aaaatcctat
2101 ctaaattact atttagatta tgaaactgaa gtacaaagtc ctttgggact
2151 aattccctaa ttacattaag agcttctgac ttactgccgc tgttaagcgc
2201 tttggcgtaa gcatcattcg ctgattgttg tccgcctcga gcagatcgtc
2251 catcgatctg aaattgtccc cattcgacgg tgtctccgtc cttatccaga
2301 taggacttga catctgagct tgatttggca ccttgaatgt tggggtggaa
2351 actggtgcta cagcttgggt gtacacaatc gaagagacga ttgttcgtaa
2401 tcgtgatttt ggggtcgaat tggatgaggg catgcaagtg aggttcccca
2451 ttctgatgca gctctctaca gattttaatg aacttagggt ttgatgggag
2501 agagagtgtt tgaatgaatg acagtaggtg ttctttgggt aaagaacact
2551 ttgggtatgt gagaaagaca ttcttggctt gaattctaaa acgaggagtt
2601 ctcatgttga ccaagtcaat tggagacact caactagaga cactcttgag
2651 catctcctcc tgttaattgg agacattata taggtgtctc taaatggcat
2701 tcttgtaata agttgaactt taatttgaat taaaaggttc aaaaggctca
2751 gaacacccaa ggggccaacc gtataatatt