Sequence of DPV Olive latent virus 2

Olive latent virus 2 MP gene for movement protein and CP gene for capsid protein, genomic RNA

ACC No: AM600639

Dated: 2008-04-02 | Length: 1696 | CRC: 845147121

                
ID   AM600639; SV 1; linear; genomic RNA; STD; VRL; 1696 BP.
XX
AC   AM600639;
XX
DT   01-MAY-2007 (Rel. 91, Created)
DT   02-APR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Olive latent virus 2 MP gene for movement protein and CP gene for capsid
DE   protein, genomic RNA
XX
KW   capsid protein; CP gene; movement protein; MP gene.
XX
OS   Olive latent virus 2
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Oleavirus.
XX
RN   [1]
RP   1-1696
RA   Parrella G.;
RT   ;
RL   Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Parrella G., Istituto per la Protezione delle Piante, C.N.R., Via
RL   Universita, 133 Portici (NA), 80055, ITALY.
XX
RN   [2]
RA   Parrella G., De Stradis A., Vovlas C.;
RT   "First report of Olive latent virus 2 in wild castor bean (Ricinus
RT   communis) in Italy";
RL   Plant Pathol. 57(2):392-392(2008).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1696
FT                   /organism="Olive latent virus 2"
FT                   /segment="RNA3"
FT                   /specific_host="Ricinus communis"
FT                   /isolate="Castor bean-CB2"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Calabria, Vibo Valentia"
FT                   /collected_by="G. Parrella"
FT                   /collection_date="10-Oct-2006"
FT                   /identified_by="G. Parrella"
FT                   /virion
FT                   /db_xref="taxon:33773"
FT   CDS             1. .1014
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /function="essential for viral cell-to-cell movement"
FT                   /db_xref="GOA:A4VAR7"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:A4VAR7"
FT                   /protein_id="CAM82796.1"
FT                   /translation="MAGLWRSNSTLDVERGRNRTQTETVQAAPRQAQGILELLNSPAAR
FT                   EALQGSDFARWRGVPVSPAGGCFELAPLRSVNNFARGLRAVFGGSTSRREAYIPQHGFY
FT                   RLNYVLVAVVPHVEHSDPGEVTVQLVENTNPTRAVDGQELTARLADGTFVFAAAPTYDI
FT                   VLEQASMLVEGEPAGAVQRMFGIRTTVMGSLTTGSAVSIYPIWSAEFPIQGATFNYVAP
FT                   SIVHIDRFNRSVATEIDVLRRRFSLMRPLRTARSRESFQVGRMSLDVARPSVVRPPPVD
FT                   PQAEGGIHVNSPTSEQSQGEDRVPRAGLASGTSVGEGANHEFISGAVKSTAPVRQI"
FT   CDS             1086. .1634
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /function="essential for virion formation"
FT                   /db_xref="UniProtKB/TrEMBL:A4VAR8"
FT                   /protein_id="CAM82797.1"
FT                   /translation="MSSAAQPMSRRARRRAARRVLGSQPGTSGGMVIPMSFVVNGATSA
FT                   DFVTYHSLHSRLAAYNGDLWIRRVAVRVTGSVAKRMGKYALFEGLAVDKSQILSAAHAR
FT                   PYVYGLPSTLSLPGGRRQVKDFQSINLFFLLDGAAHAGEFAAGTFYFEFEGSPNVDFPR
FT                   DSEGSNQAVEKFYLEHINA"
XX
SQ   Sequence 1696 BP; 355 A; 405 C; 474 G; 462 T; 0 other;

am600639 Length: 1696  02-APR-2008  Type: N  Check: 7003  ..

       1  atggctggtt tgtggcgttc taactccact ctcgatgtcg agcggggacg
      51  aaatcgtacc caaactgaaa cagtccaagc tgcccctcga caggcacaag
     101  gcattttaga gttactcaat tccccagcag cgcgggaggc gcttcagggt
     151  tcagacttcg cgcgttggcg tggagttcca gtgtcccctg ctggtggttg
     201  cttcgagctt gctcctctta ggagcgtgaa caatttcgcg agaggcctcc
     251  gtgcagtttt tggaggttct acatctagaa gagaagccta tattcctcaa
     301  catgggtttt atcggttgaa ctatgtgtta gtcgccgtgg tacctcatgt
     351  ggagcattcc gacccgggtg aagtgacggt gcaattagtt gaaaatacta
     401  atcccactcg tgcggtcgat ggtcaggagc taacagcccg tttagcagat
     451  ggtacatttg tattcgctgc ggctcctacc tatgatatag tgcttgagca
     501  agcttcgatg cttgttgaag gagaacctgc tggtgcagtg caacgtatgt
     551  ttggcatacg tacgacagtg atggggtcac tcacaaccgg atctgcggta
     601  tctatatacc caatctggtc ggccgagttt cctatacaag gtgctacttt
     651  taattatgta gccccttcca ttgtgcacat cgacaggttt aaccgttctg
     701  tggctactga gatagacgtg ttgcgtcgga ggttttctct gatgcgaccg
     751  ttacgtacgg ccagatcgcg tgagtccttc caagttggta gaatgagtct
     801  cgatgtcgcg agaccgagtg ttgttagacc tccccctgtt gatccacagg
     851  cggagggcgg tatccatgtg aattccccta cttctgaaca gagtcagggt
     901  gaggatcgtg ttccccgagc cgggttggct agcggtacta gtgttggtga
     951  aggtgcgaat catgaattca tatctggagc ggttaagagc accgctccgg
    1001  tgcgtcaaat ataataccac actaagtgtg gcatcggtgc atattctttc
    1051  tgattgactg ttaaattctg aaaaggaagg aagaaatgtc ttcagcagct
    1101  caaccgatgt cccgccgcgc tcgcagacga gctgctcggc gtgtcctggg
    1151  ttctcaacca ggaacgtctg gaggtatggt gatccccatg tcgttcgtag
    1201  tgaacggagc gacgtccgcc gactttgtga cttatcatag tcttcacagt
    1251  cggttggccg catataatgg cgatttgtgg atccgacgtg tagccgtccg
    1301  tgtgactggc tccgtcgcta agcgtatggg taaatacgcc ctttttgagg
    1351  gtctggcggt ggacaaatct caaattctgt ctgccgcgca tgcgcgtcct
    1401  tacgtgtacg gcctcccatc tacgcttagc ctccccggag ggagaaggca
    1451  ggtgaaggac tttcagtcca ttaacctgtt tttccttcta gatggtgctg
    1501  cccatgccgg cgagtttgcc gccggtacgt tttatttcga gtttgaggga
    1551  tcccctaatg tggattttcc tcgagattct gagggtagca atcaggcggt
    1601  agagaagttt tatctagagc atattaatgc ttaaccgccg ggagggccaa
    1651  ctcactgaaa gttgacggtc agtgcgttac ttgagagttc gtcttg