Sequence of DPV Tomato leaf curl Comoros virus
Tomato leaf curl Comoros virus, isolate Comoros:Bambas:2004
ACC No: AM701759
Dated: 2011-03-15 | Length: 2774 | CRC: -1740347392
ID AM701759; SV 1; linear; genomic DNA; STD; VRL; 2774 BP.
XX
AC AM701759;
XX
DT 26-JUL-2007 (Rel. 92, Created)
DT 15-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE Tomato leaf curl Comoros virus, isolate Comoros:Bambas:2004
XX
KW .
XX
OS Tomato leaf curl Comoros virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2774
RA Lefeuvre P.;
RT ;
RL Submitted (25-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Lefeuvre P., AMIS, CIRAD - UMR PVBMT, 7 Chemin de l'IRAT, Ligne Paradis,
RL Saint Pierre, 97410, REUNION.
XX
RN [2]
RA Lefeuvre P., Martin D.P., Hoareau M., Naze F., Becker N., Delatte H.,
RA Reynaud B., Lett J.M.;
RT "Begomovirus "melting pot" in the South West Indian Ocean Islands:
RT molecular diversity and evolution through recombination";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2774
FT /organism="Tomato leaf curl Comoros virus"
FT /isolate="Comoros:Bambas:2004"
FT /mol_type="genomic DNA"
FT /country="Comoros:Anjouan, Bambas"
FT /isolation_source="Lycopersicum esculentum"
FT /db_xref="taxon:997078"
FT CDS 200. .496
FT /transl_table=1
FT /gene="v2"
FT /product="V2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A7DXH9"
FT /protein_id="CAM91898.1"
FT /translation="MLAIKYLQVIEQTYEPNTLGHELIRDLILVVRARDYVEATRRYNH
FT FHARFEGASKVELRQPVYQPCCCPHCPRHKQTSVMDVQAHVQKAQDVQNVQKP"
FT CDS 306. .1082
FT /transl_table=1
FT /gene="cp"
FT /product="coat protein"
FT /db_xref="GOA:A7DXI0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A7DXI0"
FT /protein_id="CAM91899.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPFTSRVAAPIVPGTSRRRSW
FT TYRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGAAPMDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN"
FT CDS complement(1079. .1483)
FT /transl_table=1
FT /gene="c3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A7DXI1"
FT /protein_id="CAM91900.1"
FT /translation="MDSRTGELITAAQAQNGVFIWEIQNPLYFKIIDHENRPFNMPHDI
FT ISVQIRFNHNLRKELGIHKCFLNFRVWTSLQPQTGLLLSVFKNQVLKYLDRLGVISINN
FT VIRAVDHVLYDVIVKTIQVEENHEIKFNIY"
FT CDS complement(1224. .1631)
FT /transl_table=1
FT /gene="c2"
FT /product="C2 protein"
FT /db_xref="GOA:A7DXI2"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A7DXI2"
FT /protein_id="CAM91901.1"
FT /translation="MRHSSPSTSHSTQLPIKVQHRIAKKKAVRRRRVDLDCGCSYYLHI
FT NCIDHGFSHRGTHHCSSSTEWRVYLGDTKSPIFQDYRPREPAIQHAPRHHISPDKIQPQ
FT PQEGTGDSQMFSQLQGLDELTASDWSFIKRI"
FT CDS complement(1540. .2619)
FT /transl_table=1
FT /gene="rep"
FT /product="replication associated protein"
FT /db_xref="GOA:A7DXI3"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:A7DXI3"
FT /protein_id="CAM91902.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLTKEEALSQIQALQTPVNKLFIK
FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLSSPNRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALRVIKELAPKDFVLQFH
FT NLNSNLDRIFQEPPAPYVSPFLSSSFTQVPEELKEWVSENVMDAAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNAPLKAWALKNATFVTLHEPL
FT YSTANQSPAQNSQEEGSEA"
FT CDS complement(2160. .2462)
FT /transl_table=1
FT /gene="c4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A7DXI4"
FT /protein_id="CAM91903.1"
FT /translation="MGNLICMPSFNSRANTIVPINDSSTFLPQTGQHISIRTFRELNPA
FT PTSSPTSTRTETPSNGESFRSMEDLQGEDNSQPMTLTPQLLTQAVSQRLLESLRN"
XX
SQ Sequence 2774 BP; 701 A; 568 C; 664 G; 841 T; 0 other;
am701759 Length: 2774 15-MAR-2011 Type: N Check: 3991 ..
1 accggatggc cgcgcccgaa aaagcatgtg gtccccgcgc atgtggtccc
51 gcgcactatc ttttgtcatc caatcaggat cgcgctcaaa agcttagata
101 attgtttttg tccctttaac ttggtcccca agtgtgggtc ccacaaaatg
151 tggcatactc ttaaatgagt tcccagactc tgttcacggt tttcgttgta
201 tgctagctat caaatatttg caggtcattg agcaaaccta cgagcccaat
251 actttgggcc acgaattgat tcgtgatctc atattggttg ttagagctcg
301 tgactatgtc gaagcgaccc gccgatataa tcatttccac gcccgcttcg
351 aaggtgcgtc gaaggttgaa cttcgacagc ccgtttacca gccgtgttgc
401 tgcccccatt gtcccaggca caagcagacg tcggtcatgg acgtacaggc
451 ccatgtacag aaagcccagg atgtacagaa tgtacaaaag ccctgatgtt
501 cctcgtggtt gtgaaggccc atgtaaggtc cagtcttacg agcagaggga
551 tgatgtgaag catactggta ttgttcgttg tgttagtgat gttacccgtg
601 gttcgggaat tactcatagg gttggcaaga ggttctgtgt taagtccatt
651 tacattttag ggaagatatg gatggatgaa aatatcaaga agcagaatca
701 cactaatcag gttatgtttt ttttagtccg tgatagaagg ccctatggtg
751 cagccccaat ggattttggg caggtgttta acatgtttga taatgagccc
801 agtacagcta cggtgaagaa tgatttgaga gacaggtacc aggttttgcg
851 gaagtttcat gcaactgttg taggtgggcc ctctgggatg aaggaacagg
901 cattagttaa gcgatttttt aggattaaca gtcatgtaac gtataatcat
951 caggaggcag ctaagtatga gaaccatacg gagaatgctt tgttgttgta
1001 tatggcatgt actcatgcct ctaatccagt gtatgctact cttaagatac
1051 ggatctactt ctatgattcg gttggcaatt aataaatatt aaattttatt
1101 tcatgattct cttcgacttg aattgtcttt acaattacat cgtacaatac
1151 atgatcaact gctctgatta cattattaat tgaaataact cctaatctat
1201 ctaaatactt aagaacttga ttcttaaata cgcttaataa aagaccagtc
1251 tgaggctgta agctcgtcca gaccctgaag ttgagaaaac atttgtgaat
1301 ccccagttcc ttcctgaggt tgtggttgaa tcttatctgg actgatatga
1351 tgtcgtgggg catgttgaat ggccggttct cgtggtcgat aatcttgaaa
1401 tataggggat tttgtatctc ccagataaac acgccattct gtgcttgagc
1451 tgcagtgatg agttcccctg tgcgagaatc catgatcgat gcagttgatg
1501 tgcagatagt atgagcagcc gcagtcgaga tcgactcttc tacgcctcac
1551 tgccttcttc ttggctattc tgtgctggac tttgattggc agttgagtag
1601 agtggctcgt ggagggtgac gaatgtcgca tttttcaatg cccaggcttt
1651 caggggtgca tttttatcct cgtcgagata ttctttatat gaggatgtcg
1701 ggcctggatt gcagaggaag atagttggaa ttccgccttt aatttgaatt
1751 ggcttcccgt actttgtgtt gctttgccag tccctttggg cccccatgaa
1801 ttctttaaag tgcttcagat aatgcggatc tacgtcatca atgacgttat
1851 accacgcatc attgctgtac actttggggc tcaggtcaag atgaccgcac
1901 agataattgt gaggtcctaa tgatctggcc cacattgttt tgcccgtacg
1951 actatcaccc tcaattacaa tactattcgg cctccacggc cgcgcagcgg
2001 catccatgac attctcggat acccactctt taagttcttc cggaacttga
2051 gtaaaagaag aagataaaaa aggagaaaca taaggagcag gtggctcctg
2101 aaaaatccta tctaaattac tatttaaatt atggaattgc aacacaaaat
2151 cttttggtgc taattcctta atgactctaa gagcctctga cttactgcct
2201 gtgttaagag ctgcggcgta agcgtcattg gctgactgtt gtcctcccct
2251 tgcagatctt ccatcgatct gaaactctcc ccattcgagg gtgtctccgt
2301 ccttgtcgat gtaggacttg acgtcggagc tggatttagc tccctgaatg
2351 ttcggatgga aatgtgctga cctgtttggg gaagaaaggt cgaagaatcg
2401 ttgattggta caattgtatt tgccctcgaa ttgaatgagg gcatgcagat
2451 gaggttcccc attctcgtga agctctctgc agattttgat aaataattta
2501 tttactgggg tttgaagggc ttgtatttgg gaaagtgctt cctctttagt
2551 gagagagcat ttgggataag tgaggaaata atttttggct tttatgctga
2601 aacgaccggc tctaggcatt ttgaatgtcg tttagaatcg gggggcactc
2651 aaagtctgtg gcaatcgggg gaactggggg gcaatttata tagtgccccc
2701 caaatggcat ttctgtaata atcctcatgg taatttgaaa tttgaaatcc
2751 ctaagcggcc atccgtataa tatt