Sequence of DPV Sugarcane streak mosaic virus

Sugarcane Streak mosaic virus partial mRNA for coat protein (NIb gene), isolate Co 86032-19

ACC No: AM749402

Dated: 2007-07-09 | Length: 1197 | CRC: 257978171

                
ID   AM749402; SV 1; linear; mRNA; STD; VRL; 1197 BP.
XX
AC   AM749402;
XX
DT   09-JUL-2007 (Rel. 92, Created)
DT   09-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Sugarcane Streak mosaic virus partial mRNA for coat protein (NIb gene),
DE   isolate Co 86032-19
XX
KW   coat protein; NIb gene.
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae.
XX
RN   [1]
RP   1-1197
RA   Prabu G.R.;
RT   ;
RL   Submitted (07-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL   Prabu G.R., MB & GE Lab, Vasantdada Sugar Institute, Manjari (Bk), Tal.
RL   Haveli, Dist- Pune, Maharashtra 412307, INDIA.
XX
RN   [2]
RA   Prabu G.R., Kawar P.G., Harikrishnan M., Theertha Prasad D.;
RT   "Phytoplasma and virus pathogens associated with Sugarcane Grassy Shoot
RT   disease in India";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1197
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /specific_host="Saccharum officinarum, cultivar Co 86032"
FT                   /isolate="Co 86032-19"
FT                   /mol_type="mRNA"
FT                   /country="India"
FT                   /isolation_source="host's leaves with SCGS symptom"
FT                   /collected_by="Prabu, G.R."
FT                   /db_xref="taxon:53954"
FT   CDS             <1. .1007
FT                   /codon_start=3
FT                   /gene="NIb"
FT                   /product="coat protein"
FT                   /protein_id="CAO77711.1"
FT                   /translation="SKHTGKEGFLMDIDKVTALYLTDEVRIDPVPTDLLVFHSGEEALI
FT                   YHAAVGEQGTQPGLNQSTSASTVSSTSATTTSQAGSQTTGNLTNTVSQTMRSLYVPPLV
FT                   KSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTDEILPFWI
FT                   YWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQVEFEMGPMYRNAKPGIRA
FT                   IMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNILSPAEIDVR
FT                   NQVINARTPRMGKPLFRHALRAGGDEDTDLRREDDANYGRTQIGGAHFGRAQH"
XX
SQ   Sequence 1197 BP; 350 A; 275 C; 306 G; 266 T; 0 other;

am749402 Length: 1197  09-JUL-2007  Type: N  Check: 3778  ..

       1  ggagtaagca tacagggaaa gaggggttcc tcatggacat cgacaaggtc
      51  acagctctct atctcacaga tgaagtaaga attgaccctg tgccaacaga
     101  cttgcttgtg ttccattcag gagaagaagc cttaatttat cacgctgctg
     151  ttggggaaca aggaacacaa cccggattga accagagcac ttcggcttct
     201  acggtgtcga gcacatcagc taccacaaca agtcaagcag gaagtcaaac
     251  aacagggaac ttaaccaaca cagtttcaca aacgatgagg tctctatacg
     301  taccaccact ggttaagtca ctcaaaacgg aggccaaggc aaagcagatg
     351  atgaggtaca caccaccaca ggcacttata tcttcatcgg ccgcatcaat
     401  acggcagttc aatgattggg caaacacagc ggctgaaggg tatggaaaaa
     451  caattcaaca gttcacggat gagatactcc ccttttggat ctattggtgt
     501  gttgtcaacg gtgcaactga agagaacaag acaaagccaa agtggacgaa
     551  agctgtgttg aatctagatg gagcagatgg cacagagatt accgtggatg
     601  aaaacggacc ccaagtggag tttgaaatgg ggccgatgta cagaaacgcc
     651  aaacctggta ttcgcgcgat tatgagacat tttggcgaat tggcgtacaa
     701  gtgggttcag ttctcggttc gtagcgggaa acccataata ccacacaatg
     751  cagtgaaggc aggattgaca acaccagagt tttatccttg ctgcattgat
     801  ttcgtgatgg tgaacatcct ctcaccagca gaaatcgacg tgcgtaacca
     851  ggtaattaac gcacgcacac cccggatggg aaagccttta ttccgtcatg
     901  ctcttagagc cgggggagat gaggacacgg acctgcgtag ggaagatgat
     951  gcaaactatg gaaggacgca gatcggtggc gctcattttg ggcgcgccca
    1001  gcactgattt tcagtgcagt tatccatata ttatcgtatc tacgtatcaa
    1051  ttggttctct tggataggct gatggtagtt gcctgaccgc ttagtcgatc
    1101  atcaggagct actagtggat cattcggaga ttgctcaccc tgtttccaga
    1151  ccagtgagat tctgccgaac ccacaatcaa cctgcccagt gaggagg