Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl virus-[Burewala] DNA A, complete sequence, clone LA 13
ACC No: AM774299
Dated: 2010-08-11 | Length: 2758 | CRC: 1748317942
ID AM774299; SV 1; circular; genomic DNA; STD; VRL; 2758 BP.
XX
AC AM774299;
XX
DT 07-JAN-2010 (Rel. 103, Created)
DT 11-AUG-2010 (Rel. 105, Last updated, Version 2)
XX
DE Cotton leaf curl virus-[Burewala] DNA A, complete sequence, clone LA 13
XX
KW AC1 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; C4 protein; Coat protein;
KW pre-coat protein; replication associated protein;
KW replication enhancer protein.
XX
OS Cotton leaf curl Burewala virus - [India:Vehari:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2758
RA Amrao L.;
RT ;
RL Submitted (24-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL Amrao L., Plant Biotehnology Division, NIBGE, Jhang Road, Faisalabad, P.O.
RL Box 577, PAKISTAN.
XX
RN [2]
RA Amrao L., Amin I., Shahid M.S., Briddon R.W., Mansoor S.;
RT "Cotton leaf curl disease in resistant cotton is associated with a single
RT begomovirus that lacks an intact transcriptional activator protein";
RL Virus Res. 152(1-2):153-163(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2758
FT /organism="Cotton leaf curl Burewala virus -
FT [India:Vehari:2006]"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Faisalabad"
FT /collected_by="Luqman Amrao"
FT /collection_date="Jun-2004"
FT /clone="LA 13"
FT /tissue_type="leaf"
FT /db_xref="taxon:418448"
FT CDS 132. .488
FT /transl_table=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:B7ZEN4"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B7ZEN4"
FT /protein_id="CAO85783.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT CDS 292. .1062
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:B7ZEN5"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B7ZEN5"
FT /protein_id="CAO85784.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1059. .1463)
FT /transl_table=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D2N223"
FT /protein_id="CAO85785.1"
FT /translation="MDSRAGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
FT CDS complement(1534. .2595)
FT /transl_table=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /db_xref="GOA:D2N224"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:D2N224"
FT /protein_id="CAO85786.1"
FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTGSAHFHPNIQGAKSSSDVKAYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARLLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYTEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTSQGSE"
FT CDS complement(2136. .2681)
FT /transl_table=1
FT /gene="AC4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D2N225"
FT /protein_id="CAO85787.1"
FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS
FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS
FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLT
FT PQHLTQAVSQRLLESLRN"
XX
SQ Sequence 2758 BP; 720 A; 545 C; 650 G; 843 T; 0 other;
am774299 Length: 2758 11-AUG-2010 Type: N Check: 6678 ..
1 accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg
51 gccaatcata tgacgcgctc aaagcttaaa taattctccc gcctattata
101 agtacttcgt tgctaagtat gcgtttgaaa aatgtgggat ccactgttaa
151 atgagttccc cgacaccgtt cacggtttta ggtgtatgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgatacat tgggttacga
251 tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcgt ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt gaattttatt gaagatgatt ggtctacaaa
1101 tacaacatgt tgtaatacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt tagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct ttcctcaggt
1301 tgtgattgaa ctggatcctg atcgtgagta tatccatatt cgtcgtgaat
1351 ggacggttga cgtggctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg
1451 cgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc
1501 gcattcaaga tctactctcc tcctcctgtt gcgttattcg cttccctgtg
1551 atgtactttg attggaagct gagtacagtg gtccttcgag agtgatgaag
1601 attgcatttt ttaaggccca attctttaat gctgtgtttt tttcctcgtt
1651 gaggaattcc gtataactgc tgttcggacc aggattgcac aggaagattg
1701 tcggtatccc gcctttaatt tgaactggct ttccgtattt tgtgttggac
1751 tgccagtctc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg
1801 cgggtcgacg tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt
1851 tgggactcag gtctagatgt ccgcacaaat agttatgtgg tcccaataat
1901 ctagcccaca tcgtcttccc cgttcgacta tctccctcaa ttactatact
1951 ccgaggtcta aggggccgcg cagcggcatc gacaacgtta tcaatggccc
2001 aaacttcaag ttcttctgga acttgatcga aagaagaagg agaaaaagga
2051 gaaatatagg gagccggtgg ctcctgaaag attctgtcta gatttgcatt
2101 taaattatga aattgtagta caaaatcttt aggagctagt tccttaatga
2151 ctctaagagc ctctgactta ctgcctgcgt taagtgctgc ggcgtaagcg
2201 tcgttggctg tctgctgtcc tcctcttgct gatcttccat cgatctgaaa
2251 ctctccccac tcgagagtgt ccccgtcctt gtcgatgtag gccttgacat
2301 ctgagcttga tttagctccc tgaatgttcg gatggaaatg tgctgacccg
2351 gttggggata ccaggtcgaa gaatctgtta tttgtgcaga cgaatttgcc
2401 ctcgaactgg atgagcacat ggagatgagg gctcccatct tcgtgtaact
2451 ctctgcagag tttgatgtat tttttattcg agggtgtgtt gatggcttga
2501 atttgggaaa gtgcttcctc tttagtgagt gagcactgtg gataagtgat
2551 gaaataattt ttggcttgta ctttaaaacg tttgggggga gccattgact
2601 ttggtcaatt agagacaact gatgggcttt tactctggga attggagact
2651 ggatacaatt tatagtgtct ccaaatggca tattctgtaa ataactagaa
2701 gttcgtttga aattcaaatt cccctttggg ctccaaaagc ggccatccgt
2751 ataatatt