Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus segment DNA-B, complete sequence
ACC No: AM778833
Dated: 2010-01-07 | Length: 2800 | CRC: 521054635
ID AM778833; SV 1; circular; genomic DNA; STD; VRL; 2800 BP.
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AC AM778833;
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DT 07-JAN-2010 (Rel. 103, Created)
DT 07-JAN-2010 (Rel. 103, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus segment DNA-B, complete sequence
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KW movement protein; MP gene; NSP gene; nuclear shuttle protein.
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OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2800
RA Tahir M.;
RT ;
RL Submitted (12-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL Tahir M., School of Biological Sciences, University of The Punjab, School
RL of Biological Sciences, University of The Punjab, Lahore Pakistan, 54590,
RL PAKISTAN.
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RN [2]
RA Tahir M., Haider M.S., Briddon R.W.;
RT "Diversity of begomoviruses in Punjab Pakistan";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2800
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="DNA-B"
FT /host="Solanum esculentum"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="Leaves"
FT /collected_by="Muhammad Tahir"
FT /collection_date="02-Jun-2004"
FT /clone="ToBL6(2)"
FT /db_xref="taxon:223347"
FT CDS 550. .1356
FT /gene="NSP"
FT /product="nuclear shuttle protein"
FT /function="cell to nucleus movement"
FT /protein_id="CAO86066.1"
FT /translation="MAFPSPYSTPRRSGYPFNRTYNGNKSFRLWKTRKYQNWKRNRSTH
FT SIARSPTELFGDPISKQYTRKEICETQEGSEYLLHNNRYMTSYVTYPSKTRTGTDNRVR
FT SYIKLKSLNISGTFAVRKSDLMTEVVQTNGLYGVMSIVVVRDKSPKIYSATQPLIPFVE
FT LFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIRNCIPRTYTTWVTF
FT KDEEEDSCTGRYSNILRNAIILYYVWLSDVSSQVDLYSNVILNYIG"
FT CDS complement(1413. .2258)
FT /gene="MP"
FT /product="movement protein"
FT /protein_id="CAO86067.1"
FT /translation="MSIGNDGMGMGVGGYIQSERVEYALTNDAAEVTLSFPSMFEQKLS
FT QLRNRCMKIDHVVLEYRSQVPINAVGHVVVEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSFFSLKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT TKEFTMNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGLS
FT SVTSRPYRNLSGLDDSAIDPGPSASQAGSITREEIADIITKTVEQCIKSNVNAPITKSV
FT "
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SQ Sequence 2800 BP; 814 A; 633 C; 507 G; 845 T; 1 other;
am778833 Length: 2800 07-JAN-2010 Type: N Check: 3965 ..
1 accgaaaggc cgcgaaaatt ttgaccccct tatcctgacc gttgatgcgt
51 aatcattgca cgccgttatc cgtccgattt gcaacacgtg tatcccacta
101 acagacttta tggaaataaa tgtctgaatg cgtctcttta ctgcatatgt
151 gttccccata tgtctttatc gtacttctat tatgtgcgta tgtggtcccc
201 ccgcattata taaagtcttt tacataaatc aaactgcctt ctttgctatg
251 tatattttga tcggtcgaga tcaaaaatta aatatgtctc gcctaaacat
301 tatcccgttc cgttccgaat ccttcaattg aagaattatt gttttttaaa
351 atttccaaaa cccaaattaa cctttcgctc ccccaaatct ttaatggcca
401 ccgccttgta acaaatacct aaatttataa aaactggaac aatacattgt
451 ttgaatttta tgcacgctgt acaatactaa tttataaaac tgctacatat
501 atgacattgc atagtcctgt cgttgccaca catttcctat cccatccaaa
551 tggcgtttcc ctctccttat tccacccctc gccgttccgg ttacccattc
601 aacagaacat acaacggaaa caagagtttc cgcttgtgga agacccggaa
651 gtatcaaaac tggaagcgca atcgcagtac ccattccata gcacgttcgc
701 caaccgaact gtttggcgat ccaatctcca aacaatatac gcgtaaggaa
751 atctgtgaaa cacaggaggg ttcggagtat ctactgcaca acaatcgtta
801 catgacgtca tatgtgacgt atccatcgaa aacaagaact ggaacggaca
851 accgcgttcg ttcctatatc aagctaaaga gtctgaacat atctgggaca
901 tttgctgttc gtaaatctga cttgatgacc gaagtggtgc aaacaaatgg
951 tttatacgga gtgatgtcta tagttgtagt ccgcgataaa tctccaaaga
1001 tttattctgc gacccaacct ttaataccct ttgttgagct atttggatct
1051 gttaatgcat gcaggggcag tctgaaagtg gcagaacgcc accatgaacg
1101 cttcgtactt ctgaatcaaa catccatcgt cgtcaatacc cctcattcta
1151 acgctatcaa gaaattctgc attcgtaact gcatcccaag aacttacaca
1201 acctgggtaa cgttcaagga cgaagaagaa gatagctgta ctggacgata
1251 ttctaacatc ctccgaaatg caattatttt atattatgta tggttaagcg
1301 atgtatcctc acaagtcgat ctttatagca atgtaattct taattacatt
1351 ggataatata tgaaaatgca gaagaaacat tttattgata aataaatttg
1401 gcttaaaatt tattacacgc tcttcgttat tggagcattt acattggatt
1451 ttatacattg ctctacagtc ttcgtaatta tatctgcaat ctcttccctt
1501 gtaatactcc ccgcctgtga tgccgacgga cctggatcga ttgccgaatc
1551 atccaatccg ctaagatttc tatatggtct gctggtgacg gacgaaagtc
1601 cgatctccga tctgcttgcc catgattcgt tcggacctat agccagatag
1651 ggtacccgta acgatcttga actatgtccc attaaccttg aaccatctac
1701 aagacgcctt gtttgtggtt tggaacccac agaccagaaa tcaatgtcgt
1751 tcatggtgaa ttccttggtc tgtatttcta tctttggtgg tcggaattcg
1801 acgtcagtcg aatgttttgc cgacgacagc ttcaatttcc ctagcatctt
1851 acagaagtgt accccattga cgacgtttgt gttctccact cggtattcaa
1901 ctctccaagg attcttatcc ttgagagaga agaatgagga agagtagtag
1951 tgcaggttgc aattgcattt gatcggaatt gtgaattccg cttgttttgt
2001 gtccccctcc gtcaatctca tgtcgtgtat ctctacgacg acatgaccaa
2051 cagcattaat tggaacctga ctgcgatatt ccagaactac gtgatctatt
2101 ttcatgcatc tattcctcaa ctggctaagc ttctgctcga acatggaagg
2151 aaatgacaag gtgacttctg cagcatcatt tgtgagcgca tattcaacgc
2201 gctcagattg aatataccca cctactccca tacccatacc atcatttcct
2251 attgacatat tggtcgcgca gcgcaccacc cactgaaaca cagaaagaca
2301 gacgacgtgc aaagaaaccc caacgaagaa gaaaccctag caaacaacga
2351 agttgttttg caaagaatgg atgaatttgt tttataatgc tattgcatgt
2401 catgtytatg tcataccaat taccctaaaa tgaacggcac atatttttct
2451 acgaaaaaga agttgtgcat gcatatggga tgtctgttta tttacggtat
2501 acatgggaag cccaatttat gttaattggg ctgaagtata aattctgaag
2551 aagcccatga aattggccca ccatccaggt ccatttttaa aatgacatcg
2601 tatgtgtgtt attgtgtgta taaaagttag agagaagcag cagtttctct
2651 ctctagaact cattcggcgt ccctcaactt atctatataa ttggtgtctg
2701 gagtcctata tataggtaag acaccatatg gcattattgt aattttgaaa
2751 agaaaattac tttaattcaa attccctata gcggcctttc atataatatt