Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus complete sequence, isolate India
ACC No: AM884015
Dated: 2008-10-07 | Length: 2756 | CRC: -395741533
ID AM884015; SV 2; circular; genomic DNA; STD; VRL; 2756 BP.
XX
AC AM884015;
XX
DT 04-JUN-2008 (Rel. 96, Created)
DT 07-OCT-2008 (Rel. 97, Last updated, Version 2)
XX
DE Tomato leaf curl Palampur virus complete sequence, isolate India
XX
KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AC5 gene; AC5 protein;
KW AV1 gene; AV2 gene; coat protein; pre-coat protein;
KW replication enhancer protein; replication initiator protein;
KW transcriptional activator protein.
XX
OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RC revised by author [02-JUN-2008]
RP 1-2756
RA Kumar Y.;
RT ;
RL Submitted (07-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL Kumar Y., Floriculture, Institute of Himalayan Bioresource Tech., IHBT,
RL Palampur, Himachal Pradesh 176061, INDIA.
XX
RN [2]
RA Kumar Y., Hallan V., Zaidi A.A.;
RT "Molecular characterization of a distinct bipartite begomovirus species
RT infecting tomato in India";
RL Virus Genes 37(3):425-431(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Tomato leaf curl Palampur virus"
FT /specific_host="Solanum lycopersicum"
FT /isolate="India"
FT /mol_type="genomic DNA"
FT /country="India:Himachal Pradesh"
FT /collected_by="Yogesh Kumar"
FT /collection_date="30-Dec-2006"
FT /identified_by="Yogesh Kumar"
FT /tissue_type="leaf"
FT /virion
FT /db_xref="taxon:526476"
FT CDS 120. .485
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJQ8"
FT /protein_id="CAP03292.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL
FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP
FT ETKILPDVSKLGRAQGL"
FT CDS 280. .1050
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJQ9"
FT /protein_id="CAP03293.1"
FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV
FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHPSNPVYATLKIRIYFYDSVTN"
FT CDS complement(310. .795)
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJR0"
FT /protein_id="CAP03294.1"
FT /translation="MHILNSGSARFVVEHIKNFAEILWRTRRSTITHQEKHHTIRVVLG
FT LDILVHPDLAKHVDGLHTESLSDAMCETGSTGNVANTHHLTNMGDIVPGFKRLHLTWAF
FT TAPGHVRASIHPVKSWFPVHGSVHPFPCLCGADNRDSCTDSIRAVEVQTTACFRCGR"
FT CDS complement(1047. .1457)
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJR1"
FT /protein_id="CAP03295.1"
FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH
FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFKTQVLKYLDMLGVVGI
FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY"
FT CDS complement(1177. .1596)
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJR2"
FT /protein_id="CAP03296.2"
FT /translation="MQSSLHSRDHSIPVAKTSLPKKKKKNIRRRRVDLQCGCSYYISIN
FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP
FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP"
FT CDS complement(1499. .2602)
FT /gene="AC1"
FT /product="replication initiator protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJR3"
FT /protein_id="CAP03297.2"
FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH
FT NLMTNLDRIFPSRIEVYRSPFTVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG
FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDAWYNVIDDVDPHYLKHFKEFM
FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI
FT TLEGPLYSGRENVAPQEEEEEHPQETS"
FT CDS complement(2269. .2445)
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJR4"
FT /protein_id="CAP03298.1"
FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR
FT QMSRHTSTKTETF"
XX
SQ Sequence 2756 BP; 740 A; 599 C; 610 G; 807 T; 0 other;
am884015 Length: 2756 07-OCT-2008 Type: N Check: 6532 ..
1 accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg
51 agatacatgg cttatttaat gcgtggggac caataaatag acttgctcac
101 caagcttgga tccacaaaca tgtgggatcc attattgcac gaatttcctg
151 aaagcgttca tggtcttagg tgcatgctag ctgtaaaata tctcaaagag
201 atagaaaaga cctactctcc ggacacaatc ggatacgatc ttgttcgtga
251 cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat
301 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga
351 cagcccgtat gctgtccgtg cagctgtccc tattgtccgc gccacaaagg
401 caagggaatg ggtgaacaga cccatgaacc ggaaaccaag attttaccgg
451 atgtatcgaa gctcggacgt gcccaggggc tgtgaaggcc catgtaaggt
501 gcaatctttt gaatccaggc acgatgtctc ccatattggt aaggtgatgt
551 gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaag
601 cgattctgtg tgaagtccgt ctacgtgctt ggcaagatct ggatggacga
651 gaatatcaag accaagaacc acacgaatag tgtgatgttt ttcttggtgc
701 gtgatcgtcg acctacgggt gcgccacaag atttcggcga agtttttaat
751 atgttcgaca acgaacctag cactgccact gttaagaata tgcatcgtga
801 tcgatatcaa gtgctcaaaa aatggcattc gactgtgacg ggaggaacat
851 acgcgtcgaa ggaacaagca ttagttaaac gttttattag agttaataat
901 tacgttgtat ataatcaaca agaggccggc aagtatgaga atcatactga
951 aaatgcatta atgttgtata tggcctgtac tcatccatca aatcctgtat
1001 atgcgacttt aaaaatccgg atctattttt atgattcggt aacaaattaa
1051 tatgtattaa gttttacatc atatgttgcc catacatcaa ctgttctttg
1101 caatacattg tctaatacat gataagctgc tcttattaca ttattaattc
1151 caacaacacc taacatatcg aggtacttaa ggacctgggt tttgaaaact
1201 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt
1251 tagaaaacac ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact
1301 gtatttggac tgttataatg tcgtggttcg tgaggcaagg tctctcgtcg
1351 tgtttcaaaa ttttgaaata caggggattt ggaacgtccc agatatacac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc
1501 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt
1551 tcgcgaccgg aatagagtgg tccctcgagt gtaatgaaga ctgcattctt
1601 caatgcccac tgtttcagtg ctgcattctt ttcttcgtcc aagaattctt
1651 tatagctgct ttgtggtcct ttattgcaca agaagatagt gggaatgccg
1701 cctttaatca tcatcggctt tccgtatttt gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt
1801 catcaatgac gttgtaccaa gcatcgttac tgtaaaccct agggtttaga
1851 tccaagtgac cgcacaagta attgtggggt cccaaactac gcgcccacat
1901 tgttttgccc gtacgactat cgccctccaa tactaaccct atgggtctaa
1951 tcgggagcgc agcggaaaaa ggccgcgcag cggaacacct caaatttgac
2001 gacacccaat cgacgagttc tggcggaact ctgtcgaagg acgaaacagt
2051 aaatggcgaa cgataaactt cgattcgaga aggaaaaatc cgatctaaat
2101 ttgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct
2151 tttagcacct tcaatgcgtc ttctttattt ccagtattaa ttgcttgtgc
2201 gtatgcatcg ttagctgttt gttgaccacc acgagcagat cgtccatcga
2251 tctggaaaac accccactct aaaacgtctc cgtctttgtc gatgtatgtc
2301 ttgacatctg acgctgattt agctccctga atgttcggat ggaaatgtgc
2351 tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga
2401 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg
2451 tgaagctctc tgcagatttt tatgaatttc tttgatgtag gggtttctag
2501 gttttgtaat tgggaaagtg cctcttcttt agttagagag cactttggat
2551 atgtaaggaa atagtttttt gcatttattc tgaaacgagt tggcggagcc
2601 ataaacctcg tatttccaac cggtgtctct caacttcttg tattatattg
2651 gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat
2701 tttagagata aaattacttt aattcaaact cctatagcgg ccattcgtat
2751 aatatt