Sequence of DPV Wheat dwarf virus
Wheat dwarf virus complete genome, isolate SA12EcoFL2
ACC No: AM922262
Dated: 2013-04-04 | Length: 2733 | CRC: 1323217177
ID AM922262; SV 1; circular; genomic DNA; STD; VRL; 2733 BP.
XX
AC AM922262;
XX
DT 14-DEC-2008 (Rel. 98, Created)
DT 04-APR-2013 (Rel. 116, Last updated, Version 2)
XX
DE Wheat dwarf virus complete genome, isolate SA12EcoFL2
XX
KW complete genome.
XX
OS Wheat dwarf virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2733
RA Schubert J.;
RT ;
RL Submitted (10-DEC-2007) to the INSDC.
RL Schubert J., Institute of Resistance Research, Federal Centre for Breeding
RL Research, Erwin-Baur-Str. 27, D-06484 Quedlinburg, GERMANY.
XX
RN [2]
RA Schubert J., Habekuss A., Qui Y., Zhou X.;
RT "Appearance of defective forms of Wheat dwarf virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2733
FT /organism="Wheat dwarf virus"
FT /isolate="SA12EcoFL2"
FT /mol_type="genomic DNA"
FT /country="Germany:Saxony-Anhalt, Salzmuende"
FT /isolation_source="Hordeum vulgare"
FT /collected_by="A. Habekuss"
FT /collection_date="12-Mar-2007"
FT /identified_by="J. Schubert"
FT /db_xref="taxon:10834"
FT misc_feature join(2498. .2733,1. .170)
FT /function="bidirectional promoter"
FT /note="long intergenic region"
FT CDS 171. .443
FT /gene="v1"
FT /product="transport protein"
FT /db_xref="GOA:A6GVG7"
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProtKB/TrEMBL:A6GVG7"
FT /protein_id="CAP58245.1"
FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV
FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR"
FT CDS 415. .1197
FT /gene="v2"
FT /product="coat protein"
FT /db_xref="GOA:A6GVG4"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProtKB/TrEMBL:A6GVG4"
FT /protein_id="CAP58246.1"
FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA
FT LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTCYVSD
FT SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW
FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA
FT LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ"
FT misc_feature 1198. .1368
FT /function="promoter"
FT /note="short intergenic region"
FT CDS complement(join(1369. .1782,1869. .2498))
FT /gene="rep"
FT /product="replication associated protein"
FT /db_xref="GOA:B7FDD0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B7FDD0"
FT /protein_id="CAP58247.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT SIRLKGFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNDHLYSESPGRHKSIYIC
FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG
FT ENVTASQ"
FT exon complement(1369. .1782)
FT /gene="rep"
FT /number=2
FT CDS complement(1704. .2498)
FT /gene="repA"
FT /product="replication associated protein a"
FT /db_xref="GOA:B7FDD1"
FT /db_xref="InterPro:IPR001146"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B7FDD1"
FT /protein_id="CAP58248.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT SIRLKGFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNDHLYSVSLESYILCTST
FT PADKAVTDLEWMDDYSRSHREGISPYTSAVRQEQERLPGQDL"
FT intron complement(1783. .1868)
FT /gene="rep"
FT /number=1
FT exon complement(1869. .2498)
FT /gene="rep"
FT /number=1
XX
SQ Sequence 2733 BP; 693 A; 597 C; 744 G; 699 T; 0 other;
am922262 Length: 2733 04-APR-2013 Type: N Check: 5598 ..
1 accctgcgtg gtgggtccga ggcgcactcg gcttttcgtg agtgcgccga
51 ggattttgga ccacgtcttt atgtcatcac atcaattatt gttggtgagt
101 catcacatat tccacctgca attatgtgcc atcgcttagc ttataaggaa
151 gtgtcgggga aggtttctcg atggatcagg tctttacacc gccgcgttct
201 atacgggcag atcaatacca ggccccttac gatcccgggt cctccgacta
251 cgcctggcgg acctttgtgt tcgtctcctt cggtttgtta atatccgtag
301 gagttgtttg gttggcttac actctgttct tgaaggactg catattagtg
351 tggaaggcga agaagcagag gaggaccgag gaaattggtt acggtaatac
401 accggccaga ccaaatggtg accaacaagg actcccgagg taagggaaag
451 aggaagctcg aggagggcga atcgagtgga aggtggaagg ggcaagtgta
501 taagcggcgt aagcagacct acaaggtagt acctgtgagg ccacccgccc
551 tgtgtgtgta tcggtataac tggctcaatt cagacaagac caatatcgtg
601 gtgggtaaca cccctcggat tgatctgatt acctgctttg cagcgggcaa
651 ggccgataat aatcggcata caaatcagac catcctctac aagtttaacc
701 tacaggggac ctgttacgtg tcggactcct catgtatgtt cataacccca
751 atcagggttt atcactggtt ggtctatgat gcagagccga agcaggctac
801 gcctgactcc actgacatct ttacgatgcc ttggaatctg ctgccgagtt
851 catggactgt gcagagggct tggtcgcatc ggttcgtggt gaagaggaag
901 tggtgcgtga acctggtctc cgatggaagg aaggttggat ccaagacggt
951 ggactcccgc tacaactacg tagtggggaa gaatatcgtt gacgcctcca
1001 agttcgtgaa gggtttgcgc gtgacgacgg agtggatgaa cacgggtgac
1051 ggcaagatag gcgatattaa gaagggtgcc ctgtatctag taacctgtac
1101 tcgtggaggt atcactggag acagtgcctc catttcattc gaagttgtat
1151 gtgcctatac gcacgcgtgt tacttcaaat ccattgggat tcaataaata
1201 aaatagtatt ttattcatct catgtcattc gattacagat gctcggctac
1251 gagcaaagat aaaccaaact atgacataca acacactcat aaccaaaaca
1301 tcgaaaaaag aaatacaagg ggcgagatca cacaatttta gaaaccgtag
1351 ccgtccgcgc taggacagtc actgcgaagc agtgacattt tcgccgaagg
1401 cgaagaatga ttcaccctca tacatataat gtatcacagc gttagagtac
1451 atgtaatccg actgttcagg agtcatatcc ttgagccaat cttcgtctgg
1501 gttaactaaa atgatgcaag gtataccacc ccgtatcatt tttcgcttcc
1551 cgtacttagg attgacggtg aagtcacgct gagccccgac gaagcacttc
1601 cagtttggcg tgaacttgaa tggaatgtcg tcaattatgt tgtacttggc
1651 gttgacgtca taggtcgtga aatcaactag gctgttgtag tagttgtgga
1701 tccctagaga tcttgcccag gaagtctttc ctgttcttgt cggaccgcag
1751 atgtatatgg acttatgcct tcccggtgac tcctggaata atcgtccatc
1801 cactctaaat cagttacggc cttatccgca ggagtggaag tacaaaggat
1851 gtatgattcg aggcttacgg agtagagatg atcatttttc cagctttcaa
1901 tggtctcatg acacatgagg gactcgatgg gaaactcagg tgtgtaagtg
1951 ctaactgggt ctgggaatag gtggcgtgca gtgtattcga agcctttgag
2001 acggatagac cattcaaacg gaaaacgatg gcagaccatg ctgagaaatt
2051 cctctctcga ggtactcgac tcaatgatct gtttcatatc cgcgtctcgg
2101 tctttacgac ccggagtggt aactgctacg aatgttcccc actcagccgt
2151 gttgacatcg gagtcaacct ccttcatgat gtaatcacga acttggttgc
2201 agtctttggc agcttgaatg ttaggatgaa aaaatgaaaa tggtgatgtg
2251 ttcataccaa tgttgagagc attgggattg gtgatggaag cacgaagctt
2301 gttttgcacg agtacgtgca gatgtggtga tccatcttcg tggagttccc
2351 taactgcagc tatgtacaga ggttcatatt tggccaagag agtgcgaaga
2401 gagtccaagg cgtactgtgg ctctaggatg cattgaggat atgttaggaa
2451 gaggtatttg gaatagacac ggaacctggg tgcagatgaa gaggccatag
2501 tagcaagcag aagcccggca ggtccttagc gaaaaaacgg ggtgtgctcg
2551 cgaactctac tctctaccct gcgtgggagt gtgcagaatt cacaccgatg
2601 ggctcggtgt ccacggttta aatattgcag gtttaggtgg gaacgcggga
2651 ccctgtcttt tcggcgcgaa agcgactggt ggtcccgcgt gtggtttgtg
2701 gctcggggac ccgccacgca ggaatctaat att