Sequence of DPV Pepino mosaic virus

Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and CP gene for coat protein, genomic RNA, isolate E397

ACC No: AM930243

Dated: 2008-01-08 | Length: 847 | CRC: -439479901

                
ID   AM930243; SV 1; linear; genomic RNA; STD; VRL; 847 BP.
XX
AC   AM930243;
XX
DT   08-JAN-2008 (Rel. 94, Created)
DT   08-JAN-2008 (Rel. 94, Last updated, Version 1)
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DE   Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and
DE   CP gene for coat protein, genomic RNA, isolate E397
XX
KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
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RN   [1]
RP   1-847
RA   von Bargen S.;
RT   ;
RL   Submitted (14-DEC-2007) to the EMBL/GenBank/DDBJ databases.
RL   von Bargen S., Phytomedicine, Humboldt Universitaet zu Berlin, Lentzeallee
RL   55/57, Berlin, 14195, GERMANY.
XX
RN   [2]
RA   Schwarz D., Paschek U., Bandte M., Buettner C., Obermeier C.;
RT   "Spread and interaction of Pepino mosaic virus (PepMV) and Pythium
RT   aphanidermatum in a closed recirculating system. Effects on tomato growth
RT   and yield";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .847
FT                   /organism="Pepino mosaic virus"
FT                   /specific_host="Lycopersicon esculentum"
FT                   /isolate="E397"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /virion
FT                   /PCR_primers="fwd_name: PepMV TGB F, fwd_seq:
FT                   cacaccagaagtgcttaaagca, rev_name: PepMV UTR R, rev_seq:
FT                   ctctgattaagtttcgagtg"
FT                   /db_xref="taxon:112229"
FT   CDS             <1. .73
FT                   /codon_start=2
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAP58903.1"
FT                   /translation="TPEVLKAINFSPWNGLSFPKFEN"
FT   CDS             113. .826
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAP58904.1"
FT                   /translation="MTDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEEELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
FT   3'UTR           827. .>847
XX
SQ   Sequence 847 BP; 245 A; 231 C; 168 G; 203 T; 0 other;

am930243 Length: 847  08-JAN-2008  Type: N  Check: 5477  ..

       1  cacaccagaa gtgcttaaag caatcaactt ctccccttgg aacgggttaa
      51  gttttcctaa atttgaaaat taatattgag tgttcacaaa aaatcaactt
     101  caataaacaa tcatgactga cacaacacct gttgctgcca cttcaagtgc
     151  accacccaca gccaaagatg ctggtgccaa agctccttct gacttctcaa
     201  atcccaatac agctcctagt ctcagtgatt tgaagaaagt caagtacgtc
     251  tccaccgtga cctccgtggc cacaccagct gaaattgaag ccctaggtaa
     301  aatcttcacc gctatgggcc ttgccgccaa tgagactggt ccggccatgt
     351  gggatctagc tcgtgcatat gctgatgtgc agagttctaa atcggcacag
     401  ctgattggag ctaccccttc caaccctgca ctatcacgcc gagcccttgc
     451  tgctcagttt gatcgaatca atataacccc caggcaattt tgcatgtact
     501  ttgccaaagt tgtttggaac atacttctcg acagcaacat tccaccagca
     551  aattgggcca aacttggtta ccaagaagat acaaaatttg ctgcatttga
     601  cttcttcgat ggagtcacca accctgccag cctgcagcct gctgatggtc
     651  ttatcaggca gccaaatgag gaagaactag ctgctcactc cgtagctaag
     701  tacggcgcct tggctaggca aaagatctcc acaggtaatt atattaccac
     751  acttggagaa gtcacacgtg gacacatggg aggagctaac accatgtacg
     801  cgatagacgc accccctgaa ctttaaacac tcgaaactta atcagag