Sequence of DPV Turnip mosaic virus

Turnip mosaic virus partial gene for polyprotein, isolate CZH2 genomic RNA

ACC No: AM931467

Dated: 2008-01-09 | Length: 1374 | CRC: -329207078

                
ID   AM931467; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AM931467;
XX
DT   09-JAN-2008 (Rel. 94, Created)
DT   09-JAN-2008 (Rel. 94, Last updated, Version 1)
XX
DE   Turnip mosaic virus partial gene for polyprotein, isolate CZH2 genomic RNA
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Shi M.;
RT   ;
RL   Submitted (08-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Shi M., College of Life and Environment Science, Hangzhou Normal
RL   University, No.16, Xuelin Road, Xiasha, Hangzhou, Zhejiang, 310036, CHINA.
XX
RN   [2]
RA   Shi M.;
RT   "Genomic variation of turnip mosaic virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1374
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZH1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /virion
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>1374
FT                   /product="polyprotein"
FT                   /protein_id="CAP64312.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFSCGKITCPDCVTDSELSQGQASRPSMQHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRAVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPYPVTVECV
FT                   SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     1. .1374
FT                   /product="helper component proteinase"
XX
SQ   Sequence 1374 BP; 446 A; 300 C; 326 G; 302 T; 0 other;

am931467 Length: 1374  09-JAN-2008  Type: N  Check: 5016  ..

       1  agtgcagcag gagccaactt ctggaaaggc ttcgacagat gctttctcgc
      51  atatcgtagt gacaatcgcg agcatacatg ctattcaggg ctagatgtta
     101  ctgagtgcgg cgaggtggca gcactgatgt gtttagctat gttctcatgc
     151  ggaaagataa cctgccctga ctgtgtaaca gatagtgagc tatcccaagg
     201  acaagcaagc agaccatcta tgcagcacag gttgacgcag ctgcgcgatg
     251  tcatcaagtc aagctaccca cgcttcaagc atgcagtgca gatactagat
     301  aggtacgagc aatcactgag cagtgcaaac gaaaactacc aggatttcgc
     351  agaaatccag agtataagcg atggagttga gaaagctgca ttcccacacg
     401  ttaacaagct aaacgcaata ttgatcaaag gggccacagc gacaggggag
     451  gaattctcgc aggccacgaa gcatttgctc gagatagcac gatatctgaa
     501  gaacagaact gagaacattg agaagggttc actgaagtcc tttcgcaaca
     551  agatttccca gaaagcgcac atcaacccaa cactaatgtg cgacaaccag
     601  ctcgatagaa atggaaattt catatggggt gagagaggat accatgcaaa
     651  acgattcttc agcaactact ttgagataat cgatccaaag aaaggctaca
     701  cccaatatga gacaagagcg gtaccaaatg ggtcacggaa actcgcaatc
     751  ggcaaactaa tagtcccaac gaacttcgaa gttctaaggg aacagatgaa
     801  aggcgaaccg gtagaaccat acccagtaac agtcgagtgt gtgagcaaat
     851  tacagggtga ctttgtccat gcatgttgtt gtgtcacaac agaatcaggc
     901  gacccagtct tgtctgaaat aaaaatgcca accaaacacc acctagtgat
     951  tggcaacagc ggcgatccaa agtacataga tctccctgag atcgaggaga
    1001  ataaaatgta catagcgaaa gaaggttatt gttacatcaa tatcttccta
    1051  gctatgctag taaatgtcaa ggagtcgcag gcaaaggagt tcacgaaagt
    1101  tgttagggac aaactagttg gcgaacttgg caagtggccc actctgttag
    1151  atgtagcaac cgcttgttat ttcctgaaag tattttaccc agacgttgct
    1201  aacgctgaat tgccacgcat gctagtggac cataagacaa agataattca
    1251  tgtcgttgat tcatatgggt cactgtcaac tggatatcat gtccttaaga
    1301  caaatactgt ggaacaactc attaagttca cgagatgcaa tttggagtca
    1351  agcttgaaac actaccgcgt cgga