Sequence of DPV Imperata yellow mottle virus
Imperata yellow mottle virus ORF1, ORF2a, ORF2b and ORF4, genomic RNA
ACC No: AM990928
Dated: 2008-10-23 | Length: 4547 | CRC: 1437650050
ID AM990928; SV 1; linear; genomic RNA; STD; VRL; 4547 BP.
XX
AC AM990928;
XX
DT 30-SEP-2008 (Rel. 97, Created)
DT 23-OCT-2008 (Rel. 97, Last updated, Version 2)
XX
DE Imperata yellow mottle virus ORF1, ORF2a, ORF2b and ORF4, genomic RNA
XX
KW .
XX
OS Imperata yellow mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus;
OC unclassified Sobemovirus.
XX
RN [1]
RP 1-4547
RA Sereme D.;
RT ;
RL Submitted (25-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Sereme D., Production Vegetale, Inera, BP 476 Ouagadougou 01, 01, BURKINA
RL FASO.
XX
RN [2]
RA Sereme D., Lacombe S., Konate M., Pinel-Galzi A., Traore V.S., Hebrard E.,
RA Traore O., Brugidou C., Fargette D., Konate G.;
RT "Biological and molecular characterization of a putative new sobemovirus
RT infecting Imperata cylindrica and maize in Africa";
RL Arch. Virol. 153(10):1813-1820(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4547
FT /organism="Imperata yellow mottle virus"
FT /host="Imperata cylindrica"
FT /lab_host="Rottboellia exaltata"
FT /mol_type="genomic RNA"
FT /country="Burkina Faso:South West Burkina Faso"
FT /isolation_source="leaves of Rottboellia exaltata"
FT /collection_date="2000"
FT /identified_by="Drissa Sereme"
FT /db_xref="taxon:524023"
FT CDS 45. .686
FT /transl_table=1
FT /product="P1"
FT /function="putative roles in suppression of gene silencing
FT and viral movement"
FT /note="ORF1"
FT /protein_id="CAQ48411.1"
FT /translation="MTRTEITLRATSSTRKAARRHSRDGTRKAARRHSRDGTLVWAVHS
FT HEIDDPVITAPYVPGIFSQLTLVVLCHTPGCHSIIESTSVQIEHFRLLSDIYRARACES
FT YSICESCRQNSPRVRSPRAPYSSLSEGNTRQDSGSVEKWVRDTEYLESRVCGGGNPYHY
FT CSHCYPPNTSVYSRVVNNSDSRPSDIDETTGEEFYPRFSRLSVQDRSDSD"
FT CDS 713. .2509
FT /transl_table=1
FT /product="Protease and VPg"
FT /note="ORF2a"
FT /protein_id="CAQ48412.1"
FT /translation="MASFVAGQLRKGMRMMHLPGHIFLLLGIWLAGLCSDQLPVTSWWW
FT AIPLTIIVNWIASQAAEDFNRLCAGLKPEPLAKRKFGSMGNPRFDPQVGYVVDVSHGSD
FT VVTVPLPFSLLSGVAGSALYRKTVTEAYAGGSMPTPVAPDKLPGCVVTLYHGETFLGFG
FT SRVRTPNGQDLLMTNHHIALLEPNAIAKGGDMVECDFGPMKYACHDQRMDCCFYNVSPK
FT IWSLLKVSSAPLKPMLRPMACNLFGGVSSTSISTSLAFVRPESNPWFLQHNATTGRGWS
FT GTPLIHKGAVYGLHIGALGSVNVASNPALYFLTYRREVEVESPELWKSVPNEITNEEYE
FT SRRSQGIHFYELDFGGDRIKVSDREWVRHSARRAQKTKQLEGGRDWGDVEDDEEWEVTV
FT EAAVSVPPVIGEPPTPSLQSASSLQSLHTAPTRKTRRRRKPTATVQVEGEPLNYQRADL
FT LRESPPLEGLFSLGTTNGSTDSFSQPPSPVCPSQQLEEVIAGLGKELRSLRDLVSQQRL
FT EFSQNLQTMRGQLEDLKQNSNLSESKQAGSSARYRPPHSRKQSTPSKDDTQTAKSGNVS
FT DKSRGTSKRYVKKSNGSAKQES"
FT CDS 2176. .3768
FT /transl_table=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2b"
FT /note="ORF2b produced by a -1 frameshift in ORF2a,
FT translation occurs as an ORF2a-ORF2b fusion protein"
FT /protein_id="CAQ48413.1"
FT /translation="MPLTAVGRSDCRFREGTQKPPGPRVSAAVRVFPELADYAWPARGS
FT EAELESLRVQASRFKRTLPPPSLQEAVNALQGRYPNSQVRKCFRQEPWDFQALCEEVQR
FT ICQTGELNGTSSPGVPLANIENQNAAVLNLAPELVHLAVAERLVALAAVDPRQHNWTPK
FT ELVQRGLVDPVRLFVKQEPHTMRKIRERRFRLISSVSLVDQLVERMLFGPQNATEISMW
FT HLCPSKPGMGMSTPSQVEMLWKDVAHKHSLHQAAEADISAFDWSVQDWELWADLAIRLQ
FT LGSFPDLMRRAAISRFYCFMNSVFQLSDGTLIEQNLPGLMKSGSYCTSSTNSRIRCLMA
FT ELIGSPWCIAMGDDSVEGWVEGAQEKYAALGHTCKEYVACPSKQGRLGKELLSFNFCSH
FT EFTNPGLPRAELLTWAKCLYRFLSSNRETVDDLWVELNTSRQWGRIQKYLAGIGEVSQL
FT NSADGEIKAEEIQEDAAGCGGQEPAASAFEEAREIWIEPTPAQQWDNNIGPHGYEWDWP
FT FSESWSPWGRDHS"
FT CDS 3560. .4381
FT /transl_table=1
FT /product="coat protein"
FT /note="ORF4"
FT /protein_id="CAQ48414.1"
FT /translation="MGRSKQKKSKRMPQAAAVKNQQPAPSRRQGRSGSSQRQPSNGITT
FT SAPMATSGIGPSRSLGPLGGAITVEEVEHLGAFTRGTTAAGQTRAYLCMPSSLIRLSNI
FT ARCFARWRPLQWSVFYVPEVGTQTNGAIQMAYLYDYGDSLPTTTGQISACSGFLTAAVW
FT CGAAGAQLLSGKAPRSQNLVIAHMDCRRSEWMRVVDGLTDTDPAHVVNTYLPARAVVRS
FT SLLPSTEDTPGQLYVRYRIMLRDAVAPGLNDASSSAPSVDQERKGNAAVVS"
XX
SQ Sequence 4547 BP; 1040 A; 1208 C; 1234 G; 1065 T; 0 other;
am990928 Length: 4547 23-OCT-2008 Type: N Check: 6331 ..
1 gattttgagc ctacttccac ctataacacc ctacctggcc ttgtatgacc
51 cgtactgaga tcactctccg ggccacatca agcaccagga aggccgctcg
101 acgtcatagt agggacggga ccaggaaggc cgctcgacgt catagtaggg
151 acgggacact cgtctgggct gtgcattcgc acgagatcga cgaccccgtc
201 attactgcgc cttacgtccc cggcatcttc agccagttga ctctggttgt
251 gttgtgccat actccgggtt gccattcgat cattgagtct acctcagtgc
301 agatcgagca tttccggttg ttgtccgata tctatagggc gagagcctgc
351 gagtcgtact ccatttgtga gtcctgcagg cagaactctc ctagagttcg
401 ctcaccccgt gctccctatt cctctttgag tgaagggaac actagacaag
451 attcgggctc agtggagaag tgggtgcgcg acaccgagta tctcgagtca
501 cgagtttgcg gtggtggtaa cccttatcat tactgctctc attgctaccc
551 tccgaatact tctgtctatt caagagtggt caataactct gactctcggc
601 catcggacat agacgagacg actggtgagg agttctatcc ccggttttcc
651 agactatctg tccaggatag gtcggactcg gactgagcgg tcgggctttc
701 gcgtcacgcg acatggcctc ttttgttgct ggtcagctac ggaaggggat
751 gcggatgatg caccttccag gtcacatctt cctccttcta ggcatttggc
801 tagcggggtt atgttcggat caactccccg tgacgtcatg gtggtgggcg
851 atcccgttga ctatcatagt aaattggatc gcatcccaag cagccgagga
901 tttcaatcgg ctgtgcgcag ggttgaagcc cgagccacta gctaaacgca
951 agtttggctc catgggaaac ccccgtttcg atccccaagt cggatatgtg
1001 gttgacgttt cacatggctc agacgtggtt acagttcccc tgccattctc
1051 gctattgtca ggagtcgctg gttccgccct atacaggaaa acagtgacgg
1101 aggcatatgc ggggggaagc atgcccaccc cagtagcccc cgacaagcta
1151 cccgggtgtg tggtcacatt ataccatggt gagactttct tgggcttcgg
1201 ctctagagtt agaactccca atggtcaaga cttattgatg accaaccacc
1251 acatcgcgct actagagccc aacgcgatag caaagggtgg cgacatggtt
1301 gagtgtgatt ttggtcctat gaaatacgca tgccatgatc aaaggatgga
1351 ctgttgtttc tacaatgtgt ctcccaagat ctggtctctg ctcaaagttt
1401 catcagcgcc cttgaaaccc atgctcagac ccatggcgtg taatttgttc
1451 gggggcgtgt cctccacctc aatatccact agtttagcct ttgtgcggcc
1501 agagtcgaac ccttggttcc tccagcacaa cgctactact ggacgcgggt
1551 ggtcgggcac tcctctcatc cacaaaggag ctgtttacgg cctccatatt
1601 ggggctttgg ggtctgtcaa cgtggcatcc aatccggccc tatacttcct
1651 gacttatagg cgggaggtgg aagtcgagtc tcctgagctc tggaaatccg
1701 tgcctaatga aatcacaaat gaggagtatg agtcccgtcg ttctcaaggt
1751 attcacttct acgaacttga tttcggagga gatagaatta aggtctcaga
1801 ccgagaatgg gtccgacact cagcaaggag agctcagaag actaagcagc
1851 ttgaaggtgg gcgtgattgg ggtgatgttg aggatgacga ggaatgggaa
1901 gttacggttg aggcagctgt ttcagtgcct cccgtaattg gtgaaccacc
1951 aactccgagc ctacaatcag cgtcatctct gcagtcatta cacactgctc
2001 cgacccggaa gaccagaagg cggcggaaac ccactgcaac tgttcaggtt
2051 gaaggtgagc ctttaaacta ccagcgggcg gacctcctac gggagagtcc
2101 gcccttggaa ggcttattca gcttgggaac taccaatgga tcgacggaca
2151 gcttctcaca gcctccgtct ccggtatgcc cctcacagca gttggaagaa
2201 gtgattgccg gtttagggaa ggaactcaga agcctccggg acctcgtgtc
2251 tcagcagcgg ttagagtttt cccagaactt gcagactatg cgtggccagc
2301 tcgaggatct gaagcagaac tcgaatctct cagagtccaa gcaagcaggt
2351 tcaagcgcac gctaccgccc ccctcactcc aggaagcagt caacgccctc
2401 caaggacgat acccaaacag ccaagtccgg aaatgtttca gacaagagcc
2451 gtgggacttc caagcgttat gtgaagaagt ccaacggatc tgccaaacag
2501 gagagctaaa tgggacgtcc tcgccaggag taccgctagc taacattgaa
2551 aatcagaacg cagcggtact gaacttagct cccgagctag ttcacctggc
2601 agtggctgag aggctcgtcg ctttagcagc ggttgacccc cgccagcaca
2651 actggacacc aaaggagctc gttcaacgag gccttgtgga tcctgtgaga
2701 ctcttcgtca agcaagaacc acatacgatg cggaagattc gagaacgccg
2751 atttcggctg atctcttctg tgtccttggt ggaccagctc gtggagcgga
2801 tgttgtttgg cccacagaat gctacagaga tatcgatgtg gcacctttgt
2851 ccgtcgaaac ctggcatggg catgagcact ccaagtcaag tagagatgct
2901 ttggaaggat gtcgctcaca agcattccct gcaccaagct gctgaagccg
2951 acatttcggc gttcgattgg tcagtccaag attgggagtt atgggctgat
3001 cttgccatac gcctgcaatt gggatcattc ccagatctca tgaggagagc
3051 cgcgatttca cgcttttact gtttcatgaa ctccgtgttc cagctcagtg
3101 atgggacctt gatagagcaa aacctgccag gtctcatgaa atccggttca
3151 tattgcacat catctaccaa ctccagaatt cgttgcctta tggctgagct
3201 tatcggctcc ccatggtgta ttgctatggg tgatgattct gttgagggat
3251 gggtagaggg agcccaagag aagtacgccg ccctaggcca cacttgtaaa
3301 gagtacgtgg cttgcccttc taaacaagga cgcctaggga aggagcttct
3351 cagcttcaac ttctgctctc atgagttcac aaatccaggc ctgccccgag
3401 ccgaactgtt gacatgggcc aaatgcctgt accggttcct gtcttccaac
3451 agggagacag tagatgactt gtgggttgag ctaaacacaa gcaggcaatg
3501 gggccgaatc cagaaatatc tcgctgggat aggggaagtc tcccagttaa
3551 attctgcaga tggggagatc aaagcagaag aaatccaaga ggatgccgca
3601 ggctgcggcg gtcaagaacc agcagccagc gccttcgagg aggcaaggga
3651 gatctggatc gagccaacgc cagcccagca atgggataac aacatcggcc
3701 cccatggcta cgagtgggat tggcccttct cggagtcttg gtccccttgg
3751 gggcgcgatc acagttgaag aggtagagca cctcggggct ttcacccgag
3801 gaactacagc cgctggtcaa accagggctt atctttgcat gccttcttca
3851 ctaatacggt taagcaacat cgctaggtgc ttcgctcggt ggcgaccact
3901 tcagtggagc gtattttacg ttcctgaagt aggaacccag accaacggag
3951 ctattcaaat ggcttatctg tatgattatg gggatagttt gccgacaaca
4001 acaggacaaa tcagtgcctg tagcggcttt cttaccgctg ctgtctggtg
4051 tggggcagcg ggtgcgcaac tcctgtctgg gaaggctccc cgttcccaga
4101 atttggttat tgcgcatatg gattgtagac gttccgagtg gatgcgagtc
4151 gtagacggat taaccgatac agaccctgct catgtcgtca acacctacct
4201 accagcccgt gctgtggtgc gatcgtcctt gctcccatct acggaagaca
4251 ctccggggca gttgtacgtc cgttatcgga taatgctccg tgatgctgtc
4301 gctcctggac tcaacgatgc gtcgagctct gctccctcgg tagaccagga
4351 gagaaagggc aatgcggctg tagtctcatg actcgccgga ctctcctacc
4401 tttggagagt tgccatgaga ggcctaaatc tcaaccccct ctgttgtcgc
4451 ggcgacggag gatccatggg attttcacaa cccgcgcatc ggtccccagg
4501 tacaccagtg tacgtggggt cccgatggtc tttatgagaa agtaatt