Sequence of DPV Cassava brown streak virus

Cassava brown streak virus type B coat protein mRNA, partial cds.

ACC No: AY008441

Dated: 2004-04-29 | Length: 1095 | CRC: 870746058

                !!NA_SEQUENCE 1.0
ID   AY008441   standard; mRNA; VRL; 1095 BP.
XX
AC   AY008441;
XX
SV   AY008441.1
XX
DT   02-NOV-2001 (Rel. 69, Created)
DT   29-APR-2004 (Rel. 79, Last updated, Version 2)
XX
DE   Cassava brown streak virus type B coat protein mRNA, partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1095
RA   Monger W.A., Seal S., Cotton S., Foster G.D.;
RT   "Identification of different isolates of Cassava brown streak virus and
RT   development of a diagnostic test";
RL   Plant Pathol. 50(6):768-775(2001).
XX
RN   [2]
RP   1-1095
RA   Monger W.A.;
RT   ;
RL   Submitted (03-OCT-2000) to the EMBL/GenBank/DDBJ databases.
RL   Virology, University of Bristol, Woodland Road, Bristol BS8 1UG, UK
XX
DR   GOA; Q914F2.
DR   TrEMBL; Q914F2; Q914F2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1095
FT                   /country="Tanzania"
FT                   /db_xref="taxon:137758"
FT                   /mol_type="mRNA"
FT                   /note="type: B"
FT                   /organism="Cassava brown streak virus"
FT                   /specific_host="cassava cultivar Vumbi"
FT   CDS             <1. .964
FT                   /codon_start=2
FT                   /db_xref="GOA:Q914F2"
FT                   /db_xref="TrEMBL:Q914F2"
FT                   /product="coat protein"
FT                   /protein_id="AAG32151.1"
FT                   /translation="KRPCGEPDEGEVASPESSEDEEQQTSKGKTPVESPAERNQSEKSI
FT                   GEEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRD
FT                   NLTPDVIQNFLAYVPPSHAIDNQLASGAEVENWAIEVSKAYGVTIQEFYRTILPAWIVN
FT                   CIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAIL
FT                   MYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRS
FT                   KTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ   Sequence 1095 BP; 370 A; 174 C; 265 G; 286 T; 0 other;

  AY008441  Length: 1095  May 18, 2004 09:05  Type: N  Check: 4672  ..

       1  taagagacca tgtggagaac ctgatgaagg agaagttgct agcccagagt
      51  caagtgaaga tgaggagcaa caaacaagca aaggaaagac acctgtggaa
     101  tcacctgctg aacgaaatca atcagagaaa tctataggtg aggaggagga
     151  gaaacataaa aagacaaggt tcagaataag agctggtggt ggaagtgaaa
     201  agagagatga tatagataag attccgacta atgctttaga atttcgaaag
     251  agcttcaagc caccaaaagt gtcacaagca gcatatgtgt ggataccgcg
     301  ttcgcaaaga gataatttga cacctgatgt catacagaat tttctagcgt
     351  atgtgcctcc atcacatgct atagacaatc aattggcttc cggagctgaa
     401  gttgagaatt gggccatcga agtttcaaaa gcttatggag tcaccattca
     451  agagttttat aggacgatcc tacctgcttg gattgtcaat tgtattgtga
     501  atgggactag cgatgagagg aagaatgaga aatcgtggag agctgttgag
     551  ttaaatgcac agggtgagga tattgatgat tcagaatacc ctatggaacc
     601  aatgtacaaa tttgctctcc cgacaatgag gaaaataatg agaaattttt
     651  ccagccaagc aattctaatg tatcagaata gtgtgactgc tggaaaagct
     701  tttgtaataa aagcagcccg aaatgctggg tatacaagca ttgaaaataa
     751  gtggttgggt attgacttcc tagccgaggc acaattgtca caaagccaac
     801  ttgatatcaa acatcagatt ttggccgcta atgttggtag aagtaaaact
     851  aagttgttcg ctttagccgc tcctagtgat gataataatg tggataaaga
     901  aaggcacact acgcgggatg ttagtgcaac taggcatagc tatgctggtg
     951  ctgctattga ataaattaat ttgaaagtca aatttggtgg agttttaggt
    1001  agcttgttat attttggttg tgaagccaag atatattcag gagccctttc
    1051  tccatatcct tttatttagt gtggagacac aatatataaa agtac