Sequence of DPV Cassava brown streak virus

Cassava brown streak virus type A coat protein mRNA, partial cds.

ACC No: AY008442

Dated: 2004-04-29 | Length: 1024 | CRC: 1907121547

                !!NA_SEQUENCE 1.0
ID   AY008442   standard; mRNA; VRL; 1024 BP.
XX
AC   AY008442;
XX
SV   AY008442.1
XX
DT   02-NOV-2001 (Rel. 69, Created)
DT   29-APR-2004 (Rel. 79, Last updated, Version 2)
XX
DE   Cassava brown streak virus type A coat protein mRNA, partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1024
RA   Monger W.A., Seal S., Cotton S., Foster G.D.;
RT   "Identification of different isolates of Cassava brown streak virus and
RT   development of a diagnostic test";
RL   Plant Pathol. 50(6):768-775(2001).
XX
RN   [2]
RP   1-1024
RA   Monger W.A.;
RT   ;
RL   Submitted (03-OCT-2000) to the EMBL/GenBank/DDBJ databases.
RL   Virology, University of Bristol, Woodland Road, Bristol BS8 1UG, UK
XX
DR   GOA; Q914F1.
DR   TrEMBL; Q914F1; Q914F1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1024
FT                   /country="Tanzania"
FT                   /db_xref="taxon:137758"
FT                   /mol_type="mRNA"
FT                   /note="type: A"
FT                   /organism="Cassava brown streak virus"
FT                   /specific_host="cassava cultivar Kibaha"
FT   CDS             <1. .964
FT                   /codon_start=2
FT                   /db_xref="GOA:Q914F1"
FT                   /db_xref="TrEMBL:Q914F1"
FT                   /product="coat protein"
FT                   /protein_id="AAG32152.1"
FT                   /translation="KRPCGEPDEGEVASPESSEDEEQRTDKGKTPMEPPTELIQSEKSM
FT                   GESEEKHKKTKFRIRAGGGNEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRD
FT                   NLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTTQEFYRTILPAWIVN
FT                   CIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAIL
FT                   MYQNSVSAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRS
FT                   KTKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ   Sequence 1024 BP; 344 A; 170 C; 252 G; 258 T; 0 other;

  AY008442  Length: 1024  May 18, 2004 09:05  Type: N  Check: 9485  ..

       1  caaaaggccg tgtggagaac ctgatgaagg ggaagttgct agcccagagt
      51  caagtgaaga cgaagagcaa cgaactgaca aaggaaaaac acctatggaa
     101  ccgccaactg aattgattca atcagagaag tctatgggtg agagtgagga
     151  aaaacataaa aagactaagt tcagaataag agctggtggt ggaaatgaga
     201  agagagatga tatagataag attccgacca acgctctaga atttcggaag
     251  agctttaaac caccaaaagt gtcacaagca gcatatgtgt ggataccacg
     301  ttcgcaaaga gataatctga cacctgatgt catacagaat tttctagcgt
     351  acgtgcctcc atcacatgct atagacaatc aattggcttc tggagttgaa
     401  gttgagaatt gggccattga ggtttcaaaa gcttatggag tcaccactca
     451  agagttttat agaacgatcc tccctgcttg gattgttaat tgtattgtga
     501  atgggactag tgatgaaagg aagaacgaga aatcgtggag agctgttgag
     551  ctaaatgcgc agggtgagga tattgatgat tcagaatacc ctatggaacc
     601  aatgtacaaa tttgctctcc cgacaatgag gaaaattatg agaaattttt
     651  ccagccaagc aattctgatg tatcagaata gtgtgtctgc tggaaaagct
     701  tttgtgataa aagcagcccg aaatgccggg tatacaagca ttgaaaataa
     751  gtggttgggt attgacttcc tagccgaagc acaattgtca caaagccaac
     801  ttgatatcaa acatcaaata ttggctgcta atgttggtag aagtaaaact
     851  aagttattcg ctttagctgc tcctggtgac gataataatg tggataaaga
     901  aaggcacact acgcgggatg tcagtgcaac taggcacagc tacgcaggcg
     951  ctgctatcga ataaattaat ttgaaagtca agtttggtgg agttttaggt
    1001  aacttgttat attttggttg tgaa