Sequence of DPV Eggplant mottled crinkle virus
Pear latent virus 33 kDa RNA polymerase pre-readthrough protein, 92 kDa RNA polymerase, coat protein CP, 22 kDa movement protein, and 19 kDa symptom severity modulator genes, complete cds.
ACC No: AY100482
Dated: 2005-04-16 | Length: 4766 | CRC: 882513922
!!NA_SEQUENCE 1.0
ID AY100482 standard; genomic RNA; VRL; 4766 BP.
XX
AC AY100482;
XX
SV AY100482.1
XX
DT 16-JUN-2002 (Rel. 72, Created)
DT 16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Pear latent virus 33 kDa RNA polymerase pre-readthrough protein, 92 kDa RNA
DE polymerase, coat protein CP, 22 kDa movement protein, and 19 kDa symptom
DE severity modulator genes, complete cds.
XX
KW .
XX
OS Pear latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4766
RA Russo M., Vovlas C., Rubino L., Grieco F., Martelli G.P.;
RT "Molecular characterization of a tombusvirus isolated from diseased pear
RT trees in southern Italy";
RL J. Plant Pathol. 84:161-166(2002).
XX
RN [2]
RP 1-4766
RA Russo M.;
RT ;
RL Submitted (30-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL Istituto di Virologia Vegetale-Sezione di Bari, Consiglio Nazionale Delle
RL Ricerche, Via Amendola 165/A, Bari 70126, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .4766
FT /db_xref="taxon:197112"
FT /mol_type="genomic RNA"
FT /organism="Pear latent virus"
FT CDS 167. .2623
FT /codon_start=1
FT /db_xref="GOA:Q8JMT5"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q8JMT5"
FT /transl_except=(pos:1055. .1057,aa:Glx)
FT /product="92 kDa RNA polymerase"
FT /protein_id="AAM49803.1"
FT /translation="MDRLLNFLRPKRELFVGDFAIGVDRRPSVDMFQLVCRLALRYMRT
FT GKIECNVDSLQQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLSYTTKV
FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGFALAPVCLLAVYATLPREKLSVFR
FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK
FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYIDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVKZGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPAKGAFSRLSPFRKAV
FT CEKVGVAHRFGYDGFLSYYNGAKLRTYTRAVESLHISPVCERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDK
FT WDKFDRPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVER
FT KHLKRIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFEGGWKMVRNVRTAMSK
FT DVHCVNNIKDLATRKAWSNAQHHGGIALSAGIPVVEKFYSRFALYEMPKRHQRIDTVTN
FT VHKWRGSGGKYSVTPESRASFWQAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI
FT LDSAVA"
FT CDS 167. .1057
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q8JMT4"
FT /product="33 kDa RNA polymerase pre-readthrough protein"
FT /protein_id="AAM49802.1"
FT /translation="MDRLLNFLRPKRELFVGDFAIGVDRRPSVDMFQLVCRLALRYMRT
FT GKIECNVDSLQQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLSYTTKV
FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGFALAPVCLLAVYATLPREKLSVFR
FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK
FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYIDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSSESLGVK"
FT CDS 2649. .3815
FT /codon_start=1
FT /db_xref="GOA:Q8JMT3"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q8JMT3"
FT /product="coat protein CP"
FT /protein_id="AAM49804.1"
FT /translation="MEIVRRNNNSAIAINKKQLATMAATAAAGALSNYVKNNGAMVVQG
FT AVNMGKKAYGAVRNRKNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSV
FT TVTHREYLTQVNNSSAFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLH
FT YVPLCGTNEVGRVAMYWDKDSEDPEPADRVELANFGILKETAPWAEAILRVPTDKMKRY
FT CDDSTVVDRKLIDLGQLGISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLT
FT GALEASTGPGYINVTRTPTLLTITFRSTGTFLLSGVFRDTGVAVLGVTGGIGINSQTTL
FT DVVGVATSFLVNCTVSTLPATLTYGSAGITSVTANCTRATRANTVTLL"
FT CDS 3847. .4422
FT /codon_start=1
FT /db_xref="GOA:Q8JMT2"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q8JMT2"
FT /product="22 kDa movement protein"
FT /protein_id="AAM49805.1"
FT /translation="MDTEYEQVNKPWSELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT
FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI
FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPFLEGRELFSVSLRWQFGLSAQCYSLPPAKW
FT KVMYQEEALKALKPSKKKASKTDSSRLE"
FT CDS 3879. .4397
FT /codon_start=1
FT /db_xref="GOA:Q8JMT1"
FT /db_xref="HSSP:1R9F"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/Swiss-Prot:Q8JMT1"
FT /product="19 kDa symptom severity modulator"
FT /protein_id="AAM49806.1"
FT /translation="MERAIQGSDAREQAYSERWDGGCGGTITPFKLPDESPSLIEWRLH
FT NSEESEDKDNPLGFKESWSFGKVVFKRYLRYDGTEASLHRALGSWERDTVNNAASRFLG
FT FGQIGCTYCIRFRGSCLTISGGSRTLQRLIEMAIRTKRTMLQLTPCEVEGNVSRGSPEG
FT TEAFKEESE"
XX
SQ Sequence 4766 BP; 1237 A; 1003 C; 1315 G; 1211 T; 0 other;
AY100482 Length: 4766 April 19, 2005 08:53 Type: N Check: 1953 ..
1 agaaattcct cagatttctc cctgttgacc aggagttatc ggtgagttgc
51 gctttgtgct ttgcgtaagg gatttctctc gtacaggtac gatctcggac
101 cagctacggg tttgaagggt gagcctattc ttcggaaggg taaattgtaa
151 ctttcaccaa taagcaatgg atagattact gaactttctg agacctaaga
201 gagaactttt cgtaggtgat tttgcgatcg gggttgacag gaggccatcg
251 gtggacatgt tccagttggt gtgcaggttg gctctcagat atatgaggac
301 agggaaaatc gagtgcaatg tggacagtct tcaacagttc gttgttgagt
351 tgttaaagac tgattgcgca gccaaatggg aatggttcat gaaacggcgt
401 tctgccggtg attatgctat cccccttgca ctggctgcac tacccattgc
451 cccgctgttg agttatacca caaaggttag aacggtgagt gtaaaggcgt
501 tcgggaatga attgactttc ccattcagga cccttcgccc aagcttaccc
551 cgtaagggtt tgctccttcg gctggcggcc ggctttgcgt tagcacctgt
601 atgcttgctt gctgtgtacg ctaccctgcc acgggaaaaa ctgtctgtat
651 ttaggctgag aactgaggcc cgcacacata tggaggatga gagggaagca
701 acggaatgtt tggtggtaga gccagctcga gagctcaagg gaaaggacgg
751 ggaggatctc ctcactggta gtagaatgac aaaggtaatt gcgtctacag
801 ggcgccctcg caggagacct tatgcagcga aagttgctca ggttgcaaga
851 gctaaggtgg gttaccttaa gaatagtcct gagaatagat taatctacca
901 gagagtcatc attgagatca tggacaagga ttgcgtcagg tatattgaca
951 gggatgtcat attgcctttg gctattggat gttgttttgt ctacccggac
1001 ggagtggaag agtcggcggc actctggggc tcgagcgagt ccctgggtgt
1051 gaaataggga ggcctagtgc gtctacctgg ggttgtgaca cagaccaatc
1101 gagatatccc atctggtgtg ttacttcccc aggaagtgct agaggttcgt
1151 acaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgctggttg
1201 cccatcacag gcacggttct tagtgcataa tcattgcctg aaaaacctta
1251 agaggggtct tgtggaaaga gttttctgtg ttgagaaaaa cggaattctc
1301 actcgcactc cacaacctgc caaaggagcc tttagtcgtc tttccccgtt
1351 caggaaagcg gtttgtgaga aggtcggagt tgcccaccgt tttgggtatg
1401 atgggtttct atcatactac aacggtgcga agctgcgtac ttacacgcga
1451 gccgtggaga gtctgcatat ctcccccgtc tgtgagaggg atagtcattt
1501 gactaccttc gttaaggcgg agaagatatc gacgtctaag ggtgacccag
1551 cgcctagggt gatacagcct cgtaacccta ggtacaatgt ggaacttgga
1601 agatatctgc ggcatatgga gtccaaactg atgaaagctg tagatggcgt
1651 atttggtgaa acgacatgca ttaagggtta caccgctgat gaggtggggc
1701 agatctttag ggacaagtgg gacaaatttg atcgtccagt cgctattggt
1751 cttgatgcct cacggtttga tcaacactgt tcggttgaag cgttgcaatt
1801 tgagcatagc ttctacaggg ccatgtaccc tggcaacaag ctcttgagca
1851 agttgctcga atggcaactc cacaataaag ggaaaggata tgtgcctgat
1901 ggcactatta cctatcgtaa ggagggttgt cgtatgagtg gggatataaa
1951 cacatcactt ggtaattacc tgttaatgtg tgccatgatt tatggttata
2001 tgcgtcattt ggggatcaat gagtttagtc tggcgaactg tggggatgat
2051 tgtgttctca ttgtagaacg caagcatctt aaacggatac aaggcacact
2101 acccgagtat ttcctaaatc tgggttatac tatgaaggtg gaaccccctg
2151 tatttcaatt ggaggaggtt gaattctgcc aggcacaccc agtacagttt
2201 gaaggtggtt ggaagatggt tcggaatgtc cgtaccgcta tgagcaagga
2251 tgtacactgt gttaacaata ttaaagatct ggctacacgc aaggcgtgga
2301 gtaatgcaca acaccatggt ggcatagcac ttagtgctgg catacctgtg
2351 gttgagaagt tttactcccg gtttgctttg tatgagatgc caaagagaca
2401 ccaaagaatt gacacagtca caaacgtgca caagtggcgt ggatcgggtg
2451 gaaagtatag tgtgacccct gagtcaaggg caagcttttg gcaagccttt
2501 ggtctgacgg gggatgagca gcttgcttta gaggaccgtc tggatagatg
2551 ggagatggac ctatttggag aggagggtgt tgacgctcat gagcccagca
2601 tccttgactc cgccgtggcc tgaccaagtg aacacaagcg acatagcaat
2651 ggaaatcgtt aggagaaaca ataatagtgc aatcgcaatc aacaagaaac
2701 aactggccac tatggcggct actgccgccg ctggggctct gagcaattat
2751 gtgaagaaca atggagcaat ggtcgtacaa ggtgcggtga atatgggcaa
2801 gaaggcttat ggagcagtaa ggaatcgtaa gaataagggt aattcacagg
2851 caatggtgca cgtaggtggt atgggcgggg ctatgatggc ccctgtggca
2901 gtatcccggc aacttgtggg cagtaagcca aagttcgcag gtaggactgc
2951 tggatcagtc acagtcaccc accgtgagta cttaacccag gtgaacaact
3001 cctctgcttt tacaaccaat ggagggattg tcgggaattt gttacaactc
3051 aacccgctta atggcacact gttttcgtgg ttaccggcta tcgcgtcgaa
3101 cttcgatcag tacgtcttta acagcgttgt gttacattat gtccccctct
3151 gtggcacaaa tgaagtaggg cgtgttgcaa tgtactggga taaggactct
3201 gaggatcctg agcctgcgga tagagtggaa ttagctaatt tcggtatact
3251 taaagagacg gccccatggg ccgaagctat tttgagggtc ccaactgata
3301 agatgaaacg atactgcgat gacagtacag tggttgacag gaagcttatc
3351 gacctcggac agctcggaat atctacatat ggaggaaccg gaactaatcc
3401 tgtgggggat gtgtttgtgt cgtatagcgt tacgctttac ttcccacaac
3451 ccacgaatac cctactcagc acgcgacagc ttagccttac tggcgcccta
3501 gaagcatcta ctgggcctgg atatattaac gtaacacgta caccaacact
3551 cttgactata acattcaggt ctaccggaac tttcctgctt tcgggagttt
3601 tccgggacac tggtgttgct gttcttggtg tgacgggggg cataggaatt
3651 aatagtcaaa ccacacttga tgttgttggc gtagccacat catttcttgt
3701 gaactgtaca gtgtccacac tacccgctac actcacatat ggatctgctg
3751 ggataacatc tgtcactgcg aattgcacac gggccacaag ggccaacacc
3801 gtaacattgc tatagtcgcc tcggggcctc ttgaacagac cagttcatgg
3851 atactgaata cgaacaagtc aataaaccat ggagcgagct atacaaggaa
3901 gcgacgctag ggaacaagct tacagtgaac gttgggatgg aggatgtgga
3951 ggtaccatta ctcccttcaa acttcctgac gaaagtccga gtctcattga
4001 gtggaggcta cataacagtg aggagagtga ggataaagat aatccccttg
4051 gtttcaagga aagctggagt ttcgggaaag ttgtatttaa gagatatctc
4101 agatacgacg ggacggaagc ttcattgcac agagctcttg gatcttggga
4151 aagagatacg gttaacaatg cagcatctag atttctcggt ttcggccaga
4201 tcggatgtac ctattgtatt cggtttcgag gatcttgtct caccatttct
4251 ggagggtcgc gaactcttca gcgtctcatt gagatggcaa ttcggactaa
4301 gcgcacaatg ctacagctta ccccctgcga agtggaaggt aatgtatcaa
4351 gaggaagccc tgaaggcact gaagccttca aagaagaaag cgagtaagac
4401 agactcttca cgcttggagt gaagtttggt ggcaactata caccttagac
4451 tactggttac tactgtcagg ttggaaccca cattaattga gctaggtcgg
4501 gccccgtcgt aggattggtc acctacggaa tggggatatg gaaaggatct
4551 cgtaccctgt gagtcaaacg aaagttgtgc ttgggatatg gatctatgcc
4601 tagtaggtta tgtggtgtgt ctctgacttt aattggatgc cagttttcaa
4651 caggagtgga agtaactgaa caacactttg agcacggttg atctcaccct
4701 ccgggggggc tatagagatc gctggaaaca ctaccggaca accggaacat
4751 tgcagaaatg cagccc