Sequence of DPV Machupo virus
Machupo virus strain Carvallo segment S, complete sequence.
ACC No: AY129248
Dated: 2003-05-29 | Length: 3439 | CRC: -294140867
!!NA_SEQUENCE 1.0
ID AY129248 standard; genomic RNA; VRL; 3439 BP.
XX
AC AY129248;
XX
SV AY129248.1
XX
DT 26-SEP-2002 (Rel. 73, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Machupo virus strain Carvallo segment S, complete sequence.
XX
KW .
XX
OS Machupo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3439
RX MEDLINE; 22197098.
RX PUBMED; 12207889.
RA Charrel R., Feldmann H., Fulhorst C., Khelifa R., Chesse R.,
RA Lamballerie X.;
RT "Phylogeny of New World arenaviruses based on the complete coding sequences
RT of the small genomic segment identified an evolutionary lineage produced by
RT intrasegmental recombination";
RL Biochem. Biophys. Res. Commun. 296(5):1118-1124(2002).
XX
RN [2]
RP 1-3439
RA Charrel R.N., Feldmann H., Khelifa R., de Lamballerie X.;
RT ;
RL Submitted (05-JUL-2002) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents, Universite de la Mediterranee, 27 Blvd Jean
RL Moulin, Marseille 13005, France
XX
DR GOA; Q8AZ68.
DR SPTREMBL; Q8AZ57; Q8AZ57.
DR SPTREMBL; Q8AZ68; Q8AZ68.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3439
FT /db_xref="taxon:11628"
FT /mol_type="genomic RNA"
FT /organism="Machupo virus"
FT /strain="Carvallo"
FT /segment="S"
FT CDS 89. .1579
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8AZ57"
FT /product="glycoprotein precursor"
FT /protein_id="AAN05425.1"
FT /translation="MGQLISFFQEIPVFLQEALNIALVAVSLIAVIKGIINLYKSGLFQ
FT FIFFLLLAGRSCSDGTFKIGLHTEFQSVTLTMQRLLANHSNELPSLCMLNNSFYYMRGG
FT VNTFLIRVSDISVLMKEYDVSIYEPEDLGNCLNKSDSSWAIHWFSNALGHDWLMDPPML
FT CRNKTKKEGSNIQFNISKADDARVYGKKIRNGMRHLFRGFHDPCEEGKVCYLTINQCGD
FT PSSFDYCGVNHLSKCQFDHVNTLHFLVRSKTHLNFERSLKAFFSWSLTDSSGKDMPGGY
FT CLEEWMLIAAKMKCFGNTAVAKCNQNHDSEFCDMLRLFDYNKNAIKTLNDESKKEINLL
FT SQTVNALISDNLLMKNKIKELMSIPYCNYTKFWYVNHTLTGQHTLPRCWLIRNGSYLNT
FT SEFRNDWILESDHLISEMLSKEYAERQGKTPITLVDICFWSTIFFTASLFLHLVGIPTH
FT RHLKGEACPLPHKLDSFGGCRCGKYPRLKKPTIWHKRH"
FT CDS complement(1670. .3364)
FT /codon_start=1
FT /db_xref="GOA:Q8AZ68"
FT /db_xref="SPTREMBL:Q8AZ68"
FT /product="nucleocapsid protein"
FT /protein_id="AAN05426.1"
FT /translation="MAHSKEIPSFRWTQSLRRGLSQFTHTVKTDVLKDAKLIADSIDFN
FT QVSQVQRALRKNKRGEEDLNKLRDLNKEVDRLMSMKSIQKNTIFKIGDLGRDELMELAS
FT DLEKLKNKIKRTESGPQGLYMGNLSQLQLTKRSEILKTLGFQQQRGAGNGVVRIWDVSD
FT PSKLNNQFGSMPALTIACMTVQGGETMNSVVQALTSLGLLYTVKYPNLNDLDKLTLEHE
FT CLQIVTKDESSINISGYNFSLSAAVKAGASILDGGNMLETIRVTPDNFSSLIKSTLQVK
FT RKEGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQILGRSWDNTSVDLTKKPQVG
FT PRQPEKNGQNLRLANLTEMQEAVIKEAVKKLDPTNTLWLDIEGPPTDPVELALYQPANK
FT HYIHCFRKPHDEKGFKNGSRHSHGILMQDIEDAMPGVLSYVIGLLPQDMVITTQGSDDI
FT RKLLDIHGRKDLKLVDVKLTSDQARLYDQQIWEKFGHLCKHHNGVVVNKKKREKDSPFK
FT LSSGEPHCALLDCIMYQSVMDGKMVDEEPVALLPLSLLFLPKAAFAL"
XX
SQ Sequence 3439 BP; 917 A; 781 C; 711 G; 1030 T; 0 other;
AY129248 Length: 3439 December 5, 2003 15:01 Type: N Check: 51 ..
1 cgcacatgtg atcctaggcg attcttgatc gcgcttatta gctaaccaat
51 ttaatttggt gttgaagtgt tgacacgctc tctaacacat ggggcagctt
101 atcagcttct ttcaggagat tcctgttttt ctacaggaag ctctgaacat
151 cgctttagtg gctgttagtc tcatagctgt catcaaaggc atcattaacc
201 tttacaaaag tggtctcttc cagttcatct tctttctcct cctagcaggg
251 aggtcctgct cggatggcac attcaaaata ggcctacaca ctgagttcca
301 gtcagtcacc cttaccatgc agagactttt agctaaccat tcaaatgagc
351 tcccatctct ctgcatgctt aacaatagtt tttattatat gaggggaggt
401 gtgaacacct tcctgattcg tgtttctgat atttcagtcc tcatgaagga
451 gtatgatgta tcaatctatg aaccagaaga ccttggaaat tgtcttaaca
501 agtctgactc aagctgggct attcattggt tctcaaatgc tttgggacat
551 gactggctta tggatcctcc aatgctatgt agaaacaaga caaagaagga
601 gggatctaac attcaattca acatcagcaa agctgatgat gccagagtgt
651 atggaaagaa gataagaaat ggtatgaggc atctcttcag gggcttccat
701 gacccgtgtg aggaagggaa agtgtgctac ctgaccatca atcagtgtgg
751 tgaccccagt tcctttgact actgtggcgt gaatcatctt tccaaatgtc
801 agtttgacca tgtgaacacc cttcatttcc ttgtgagaag taagacacat
851 ctcaactttg agaggtcttt gaaagcattt ttctcatggt ctctgacaga
901 ctcctcagga aaggacatgc caggaggtta ttgtctagag gaatggatgt
951 tgatagcagc caaaatgaaa tgtttcggaa acactgctgt tgctaaatgt
1001 aatcaaaatc atgactcaga gttctgtgat atgctgaggc tattcgacta
1051 taacaagaat gcaataaaga ccctcaatga tgaatcaaag aaagaaatca
1101 atcttctaag ccagacagtg aatgccttaa tctcagataa tttgttaatg
1151 aagaataaaa ttaaagagct aatgagcatc ccttattgta attacacaaa
1201 gttttggtat gtcaatcata ccctgacagg gcagcacact cttccaagat
1251 gttggttgat aaggaatgga agttatctta acacttctga attcaggaat
1301 gactggattt tagagagtga tcacctcatc tcagagatgt taagtaagga
1351 atatgctgaa aggcaaggca aaaccccaat cacattagtt gatatttgtt
1401 tctggagcac aattttcttc acagcatcat tgttccttca tctagtcgga
1451 atacccaccc atcgacacct caaaggcgaa gcctgtcctt tgcctcataa
1501 gctggacagc ttcggaggtt gtagatgtgg caaatatccc agattgaaga
1551 aacccaccat ctggcacaaa agacattaaa cacagccaag acccctgccg
1601 acccgggccc agcccgggtc ggcggggccc cccagtccgc ggctctgccg
1651 cggactgggg aggcactgct tacagtgcaa aggctgcctt gggtagaaat
1701 agaaggctga gaggtaaaag tgccactggt tcttcatcta ccattttgcc
1751 atccatcact gattgataca tgatacaatc caacagagca cagtgaggtt
1801 caccagaact caatttgaat ggagagtctt tttctctctt tttcttgttg
1851 acaacaactc cattatgatg tttgcaaaga tgtccaaact tctcccaaat
1901 ttgctgatca tagagtcttg cttgatcaga tgtgagtttc acatctacca
1951 gctttaaatc cttccgtcca tgaatgtcta aaagtttcct tatgtcgtca
2001 gaaccttgag ttgtaatcac catatcttgt ggtagtaaac ctattacata
2051 acttaatact cctggcattg catcctcgat gtcttgcatc aagatgccat
2101 gtgaatgtct gctgccattt ttgaagccct tctcatcatg tggctttcta
2151 aaacaatgaa tataatgctt gttggctggc tgatatagtg ccaattccac
2201 agggtctgtt ggaggccctt caatgtcaag ccacagtgta ttagtggggt
2251 ctaacttctt tacagcctct ttaatcactg cttcttgcat ttcagtcagg
2301 tttgctagtc ttagattctg accgtttttc tcgggttgtc tcggtccaac
2351 ttgaggtttc tttgttagat caacacttgt gttgtcccaa gatctcccaa
2401 gaatttgtga tctggaacca atgtaaggcc acccgtcacc tgagagacac
2451 aatttataca gaaggttctc ataaggattt cgattcccag gtttctcgtc
2501 tataaacatc ccctcttttc gcttgacttg cagagttgat ttaatcaagc
2551 tggagaaatt atcaggagtg accctaattg tttccagcat gttcccaccg
2601 tcaagtattg aggcgccagc tttcacagca gctgacagac tgaagttata
2651 gccagagatg ttgatggagc tctcgtcctt agttacgatc tgcaagcatt
2701 cgtgctctag agttagcttg tcaaggtcat ttaaattcgg atatttaaca
2751 gtgtataaca ggcccagaga tgtcaacgct tggaccacac tattcatcgt
2801 ttctccaccc tggacagtca tacaagcgat tgtgagagct ggcatggaac
2851 caaactgatt attcagtttt gatggatctg agacatccca gattctaacc
2901 acaccatttc cagcacctct ctgctgttgg aatcccaggg tcttcaagat
2951 ttctgacctc tttgtcagtt gcagctgtga caaattaccc atgtacagcc
3001 cttggggacc tgactcagtc ctctttatct tgttcttcag tttttccaag
3051 tctgatgcaa gctccatcaa ttcatctctc cccagatctc caatcttgaa
3101 tatggtgttt ttctggatgc ttttcataga catgagccta tccacttctt
3151 tgtttaaatc cctcagcttg ttcagatcct cttcacccct tttgttcttt
3201 ctgagagccc tctgcacttg tgaaacctgg ttgaagtcga tgctgtcagc
3251 tatgagcttg gcatctttca acacatctgt tttcacagtg tgggtgaact
3301 gactcaggcc tcttctcagt gactgagtcc accgaaagct gggaatttcc
3351 ttggagtgag ccatagtggc taataaccaa aggatttgaa ataaagctca
3401 gtagaagagt tagacacttt gcctaggatc cactgtgcg