Sequence of DPV Potato spindle tuber viroid

Potato spindle tuber viroid mutant C359U, complete genome.

ACC No: AY152840

Dated: 2006-11-14 | Length: 359 | CRC: 177083011

                
ID   AY152840; SV 1; linear; genomic RNA; STD; VRL; 359 BP.
XX
AC   AY152840;
XX
DT   27-NOV-2002 (Rel. 73, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
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DE   Potato spindle tuber viroid mutant C359U, complete genome.
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KW   .
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OS   Potato spindle tuber viroid
OC   Viroids; Pospiviroidae; Pospiviroid.
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RN   [1]
RP   1-359
RA   Gast F.-U., Kempe D.;
RT   "Mutagenesis of potato spindle tuber viroid RNA reveals structural
RT   flexibility of the left terminus";
RL   Unpublished.
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RN   [2]
RP   1-359
RA   Gast F.-U., Kempe D.;
RT   ;
RL   Submitted (20-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   Analytische Chemie, Justus-Liebig-Universitaet, Schuberstrasse 60, Giessen
RL   D-35392, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1. .359
FT                   /organism="Potato spindle tuber viroid"
FT                   /specific_host="Lycopersicon esculentum"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12892"
FT   variation       359
FT                   /replace="c"
FT                   /note="stable mutant C359U; derived from PSTVd isolate
FT                   KF440-2; exchange produces a UUCG tetraloop in its left
FT                   terminal end, stabilizing the unbranched form of the left
FT                   terminus"
XX
SQ   Sequence 359 BP; 75 A; 107 C; 100 G; 77 T; 0 other;

ay152840 Length: 359  14-NOV-2006  Type: N  Check: 4564  ..

       1  cggaactaaa ctcgtggttc ctgtggttca cacctgacct cctgacaaga
      51  aaagaaaaaa gaaggcggct cggaggagcg cttcagggat ccccggggaa
     101  acctggagcg aactggcaaa aaaggacggt ggggagtgcc cagcggccga
     151  caggagtaat tcccgccgaa acagggtttt cacccttcct ttcttcgggt
     201  gtccttcctc gcgcccgcag gaccacccct cgcccccttt gcgctgtcgc
     251  ttcggctact acccggtgga aacaactgaa gctcccgaga accgcttttt
     301  ctctatctaa cttgttccgg ggcgagggtg tttagccctt ggaaccgcag
     351  ttggttctt