Sequence of DPV Squash leaf curl China virus
Squash leaf curl China virus - [Pumpkin :Coimbatore] segment DNA-A, complete sequence.
ACC No: AY184487
Dated: 2005-04-16 | Length: 2738 | CRC: 1962858119
!!NA_SEQUENCE 1.0
ID AY184487 standard; genomic DNA; VRL; 2738 BP.
XX
AC AY184487;
XX
SV AY184487.3
XX
DT 15-APR-2003 (Rel. 75, Created)
DT 16-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE Squash leaf curl China virus - [Pumpkin :Coimbatore] segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Squash leaf curl China virus - [Pumpkin :Coimbatore]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2738
RA Muniyappa V., Maruthi M.N., Babitha C.R., Colvin J., Briddon R.W.,
RA Rangaswamy K.T.;
RT "Characterization of pumpkin yellow vein mosaic virus from India";
RL Ann. Appl. Biol. 142(3):323-331(2003).
XX
RN [2]
RP 1-2738
RA Maruthi M.N., Briddon R.W., Colvin J., Muniyappa V.;
RT ;
RL Submitted (20-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Plant, Animal and Human Health Group, Natural Resources Institute,
RL University of Greenwich, Central Avenue, Chatham Maritime, Kent ME4 4TB, UK
XX
RN [3]
RC Sequence update by submitter
RP 1-2738
RA Maruthi M.N., Briddon R.W., Colvin J., Muniyappa V.;
RT ;
RL Submitted (13-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant, Animal and Human Health Group, Natural Resources Institute,
RL University of Greenwich, Central Avenue, Chatham Maritime, Kent ME4 4TB, UK
XX
RN [4]
RC Sequence update by submitter
RP 1-2738
RA Maruthi M.N., Briddon R.W., Colvin J., Muniyappa V.;
RT ;
RL Submitted (18-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant, Animal and Human Health Group, Natural Resources Institute,
RL University of Greenwich, Central Avenue, Chatham Maritime, Kent ME4 4TB, UK
XX
CC On Mar 18, 2005 this sequence version replaced gi:57639253.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2738
FT /country="India:Coimbatore, Tamil Nadu"
FT /db_xref="taxon:320438"
FT /mol_type="genomic DNA"
FT /organism="Squash leaf curl China virus - [Pumpkin
FT :Coimbatore]"
FT /isolation_source="pumpkin"
FT /segment="DNA-A"
FT gene 121. .459
FT /gene="AV2"
FT CDS 121. .459
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5JC35"
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AAW55548.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLLEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCRCPHCPRHKSKGLDQQADEQ
FT KTQNGQNV"
FT gene 281. .1051
FT /gene="AV1"
FT CDS 281. .1051
FT /codon_start=1
FT /db_xref="GOA:Q80G34"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q80G34"
FT /product="coat protein"
FT /gene="AV1"
FT /protein_id="AAO91815.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMDRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1048. .1458)
FT /gene="AC3"
FT CDS complement(1048. .1458)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q5JC34"
FT /note="REn"
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AAW55551.1"
FT /translation="MITDSRTGEYITADRAEDGVYIWEVPNPLYFKITKHDIRPCLEEH
FT DIIKVQIMFNHNLRKALGLHKCVLMFQIWTGLRPPIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVLRAVYHVLDNVLEKTIDVWTTYDVKLNLY"
FT gene complement(1193. .1597)
FT /gene="AC2"
FT CDS complement(1193. .1597)
FT /codon_start=1
FT /db_xref="GOA:Q5JC33"
FT /db_xref="UniProt/TrEMBL:Q5JC33"
FT /note="TrAP"
FT /gene="AC2"
FT /product="transcriptional activator"
FT /protein_id="AAW55550.1"
FT /translation="MQSSSQSKNHSIPVAKESLHPRKKKNIRRRRIDLPCGCSYYMSID
FT CHDHGFTHRGIHHCGSSRGWRVYLGSSKSPIFQNNKTRYQTVSRRTRHNQSADNVQPQP
FT AESTGASQMCSNVPNLDGLTPSDWDFLESL"
FT gene complement(1500. .2585)
FT /gene="AC1"
FT CDS complement(1500. .2585)
FT /codon_start=1
FT /db_xref="GOA:Q5JC32"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q5JC32"
FT /note="Rep"
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AAW55549.1"
FT /translation="MAPPRHFKISAKTISLTYPKCSITKEEALSQLRTLETPTSKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYARAINTGNKEDALKVLKELAPKDYVLQFH
FT NMNSNLDRIFPPRAEVYISPFSVSSFDRVPPELVDWVSGNVVCSAARPIRPIGIVLEGD
FT SRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLRNKGPNSSYKEYLDEEKNAALKQWALKNAIFITIEEPL
FT YSGRERIASSEEEEEHQTQTN"
FT gene complement(2252. .2428)
FT /gene="AC4"
FT CDS complement(2252. .2428)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5JC31"
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AAW55552.1"
FT /translation="MGLRISTFLSSSKESSSARIIDSSTWYPQVGQHISIRTFRELNRH
FT LTSRNTSTKTVTC"
XX
SQ Sequence 2738 BP; 743 A; 589 C; 597 G; 809 T; 0 other;
AY184487 Length: 2738 April 19, 2005 08:55 Type: N Check: 8736 ..
1 accgaatggc cgcccgattt ttttatgtgg gtcctcaacc aatgaaattc
51 acgctacatg tcttatttag tgtgtgggga ccaataaata gacttgctca
101 ccaagtttgg atctacaaac atgtgggatc cattattgca cgaatttcct
151 gaaagcgttc atggtctaag gtgcatgcta gctgtaaaat atctcctaga
201 gatagaaaag aactattcac cagacacagt cggctacgat cttgtgcgag
251 atctcattct tgttcttcga gcaaagaact atggcgaagc gaccagcaga
301 tatcatcatt tcaacgcccg catcgaaggt acgccgacgt ctcaacttcg
351 acagccccta tggagctcgt gccgttgtcc ccattgcccg cgtcacaaaa
401 gcaaaggcct ggaccaacag gccgatgaac agaaaaccca gaatggacag
451 aatgtatagg agtcccgacg tgccaagggg ctgtgaaggc ccttgtaagg
501 tgcagtcctt tgaatctagg cacgatgtct ctcatattgg caaggtcatg
551 tgtgttagtg atgttacacg aggaaccgga ctcacacatc gcgtagggaa
601 gcgattctgt gtgaaatccg tctatgtgct ggggaagata tggatggatg
651 aaaacatcaa gactaaaaac catactaaca gtgtcatgtt ttttttggtt
701 cgtgatcgtc gtcctacagg atctccacaa gattttgggg aagtctttaa
751 catgtttgat aatgaaccga gcacagcaac ggtgaagaat atgcatcgtg
801 atcgttatca agtcctacgg aagtggcatg cgactgtgac gggaggaacg
851 tatgcttcta gagagcaagc attagttagg aaatttgtta gggttaataa
901 ttatgttgtc tacaatcaac aagaagccgg caagtatgag aatcatactg
951 aaaatgcatt aatgttgtat atggcttgta ctcacgcatc gaaccctgta
1001 tacgcgactt tgaaaatccg gatctatttt tatgattcgg taacaaatta
1051 atataagttc aatttcacat catatgttgt ccatacatca attgtctttt
1101 ccaatacatt atccaacaca tgataaactg ctcttaatac attataaata
1151 ccaatcaccc ccaacatatc caggtactta aggacctggg tcttaaagac
1201 tctcaagaaa atcccaatcg gagggcgtaa gcccgtccag atttggaaca
1251 ttagaacaca tttgtgaagc cccagtgctt tccgcaggtt gtggttgaac
1301 attatctgca ctttgattat gtcgtgttct tctagacacg gtctgatatc
1351 gtgttttgtt attttgaaat ataggggatt tggaacttcc cagatataca
1401 cgccatcctc tgctcgatcc gcagtgatgt attcccctgt gcgtgaatcc
1451 gtgatcatgg caatctattg acatgtaata cgagcatccg cacggtagat
1501 caattcgtct gcgtctgatg ttcttcttct tcctcggatg aagcgattct
1551 ttcgcgaccg gaatagagtg gttcttcgat tgtgatgaag attgcattct
1601 ttaatgccca ctgcttcagt gctgcatttt tctcttcatc gagatactct
1651 ttgtaactgc tgtttggtcc tttattgcgg aggaagatgg tgggaattcc
1701 acctttaatc atgactggct ttccgtactt cgtgttactt tgccagtctc
1751 tctgggcccc catgaattct ttaaaatgct ttagatagtg gggatcaacg
1801 tcatcaatga cgttgtacca agcatcatta ttgtacactc tcgggcttag
1851 atctaggtgg ccgcacagat aattgtgcgg tcccaaagaa cgcgcccacg
1901 cagttttgcc cgttctacta tcaccctcta aaactattcc tatgggtcta
1951 atcggccgcg cagcggaaca taccacatta cctgaaaccc aatcgacgag
2001 ttctggcgga actctgtcga acgatgaaac tgaaaaagga gaaatataca
2051 cctcagctcg aggtggaaaa atgcgatcta aattggaatt catattatga
2101 aattgcaaaa cataatcttt gggtgctaat tctttcaata ctttcaatgc
2151 atcttcctta ttccctgtat ttattgccct tgcgtatgcg tcgttggctg
2201 tttgttgacc tccacgagca gatcggccat cgatctggaa gacaccccat
2251 tctaacacgt caccgtcttt gtcgatgtat ttcttgacgt cagatgccga
2301 tttagctccc tgaatgttcg gatggaaatg tgctgaccga cttggggata
2351 ccaagtcgaa gaatctatta ttcttgcact ggaactttcc ttcgaactgg
2401 ataagaacgt ggatatgcgg agacccatct tcgtgcaact ctctgcaaat
2451 tttgataaat ttcttcgaag ttggagtttc tagggttctc aattgggaaa
2501 gtgcttcttc tttggttata gagcactttg gatatgtgag ggaaatagtt
2551 ttcgcactta ttttgaaatg cctaggagga gccatcaaaa cgcgcgtttt
2601 gattcggggt ctctccaaaa ctatggtata ttggggtatg gggtctcata
2651 tatactttgg acaccaaatg gcaaaatggt aattatgcaa ataattactt
2701 taattcaaaa tgaataaagc ggccattcgt ataatatt