Sequence of DPV Rice stripe virus
Rice stripe virus isolate HZ segment 2 gene, complete sequence.
ACC No: AY186789
Dated: 2008-10-16 | Length: 3514 | CRC: 1855086450
ID AY186789; SV 2; linear; genomic RNA; STD; VRL; 3514 BP.
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AC AY186789;
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DT 04-FEB-2003 (Rel. 74, Created)
DT 16-OCT-2008 (Rel. 97, Last updated, Version 3)
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DE Rice stripe virus isolate HZ segment 2 gene, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-3514
RA Wei T., Lin H., Lin Q., Wu Z., Xie L.;
RT "Analysis of genetic diversity of rice stripe virus in the NS2 gene";
RL Unpublished.
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RN [2]
RP 1-3514
RA Wei T.Y., Lin H.X., Xie L.H.;
RT ;
RL Submitted (23-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, The Institute of Plant, Jinshan, Fuzhou, Fujian 350002,
RL China
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RN [3]
RC Sequence update by submitter
RP 1-3514
RA Wei T.Y., Lin H.X., Xie L.H.;
RT ;
RL Submitted (14-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, The Institute of Plant, Jinshan, Fuzhou, Fujian 350002,
RL China
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CC On May 14, 2003 this sequence version replaced gi:28200381.
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FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /organism="Rice stripe virus"
FT /segment="RNA2"
FT /isolate="HZ"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12331"
FT CDS 81. .680
FT /codon_start=1
FT /product="NS2 protein"
FT /note="putative movement protein"
FT /db_xref="InterPro:IPR009965"
FT /db_xref="UniProtKB/TrEMBL:Q808A1"
FT /protein_id="AAO31606.2"
FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI
FT WLMGCCEEFTDPALRAHALAIATGSNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV
FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM"
FT CDS complement(980. .3484)
FT /codon_start=1
FT /product="NSvc2 protein"
FT /note="membrane glycoprotein"
FT /db_xref="InterPro:IPR009547"
FT /db_xref="UniProtKB/TrEMBL:Q809B5"
FT /protein_id="AAO31607.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREASEIVKVPC
FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY
FT ISCHDATLQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVEDRACIQ
FT PAQAKKPEEIINHGVAIKPSCTDGVLYYINSSCEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL
FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED
FT SIAPNTNVSDKVKRNGRKVENGMIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE
FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF
FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
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SQ Sequence 3514 BP; 1071 A; 740 C; 628 G; 1075 T; 0 other;
ay186789 Length: 3514 16-OCT-2008 Type: N Check: 3410 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagaatctc gtcttcagca atggcattac tccttttcaa
101 tgatcactac tatggttttc tccataagta taaaagacat actggatcat
151 atgataatct cttcaatttg aggtgctcta aagaagacca ctatttgaac
201 tctcttgatg ccatctggct catgggatgc tgtgaggagt tcacagatcc
251 agctcttaga gcacatgctc tcgccatagc aactggatct aacataggtt
301 tagttaacaa taatgctgtg atatctgatg agaggctgaa atgctggctc
351 tgtaaaaaac catctcatca acagactgag catctgaaac tgatcctgtt
401 acccaacttg gtcaacgggt ttcagtttgc tacagagtca tatcacattt
451 gcctgaagga tcactctgga gatgacccta cacaatatct tagtgagttc
501 tcctttccca caggattaag agcctactac aagccacatc agaagatgga
551 gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca
601 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt
651 ggagcacatg agtgccctat tctaatgtga acttggaaga tgatattgac
701 tgtggcctac aggcacatac acacactggc cacaaacact acaatggtgc
751 tatgcatcaa tttataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggt gagcctagct cactttgatt attgagtaaa ttaatgaaaa
851 caaacaagta taattgtaac tataatagct ttcttattat tatgtaatca
901 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa
951 tatgggcata catgagtgaa cctattggct taatccacct gtctgatgtc
1001 atctagaaaa ctcctaatgg tcttcaaaat gagtcctatt ggtattattg
1051 aagctactag agataacttt gggttgtcct tgactatccc ggctagcaat
1101 tccatccaat tggtggtgct ggtcttcaca gcttcaaaag agctcacatc
1151 aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc
1201 acatgagagt atcaccggag tatatgaatt tgcatttgat catggaacca
1251 actgtgaccg aatagtaagt tgttgttatg catgttcctt ttttaatgtt
1301 gttcaatatc atagggcaaa ctgccaatcc ttcgcaggcc aagatatcac
1351 tgagatagac tttgtttgaa gattcaatgc ttacagttgt cttcttaaat
1401 ttcctctcta ttccagtgat cttgcatgag gtcccattga gagatatctt
1451 actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta
1501 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac
1551 acatccttta agggttcact tttcacatgc tctagcatat ccactccatc
1601 cctctctaca tacctaataa ctggcaaatc ttcatttgaa agtatcttag
1651 ttttacactt actgctaaga acaacagcat cttctttagt tggacactgt
1701 atgttgccta gtaactcctt gtcaaaagac cctaaatcat ttgcggtcct
1751 taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac
1801 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta
1851 gtaatgcctc ctagttcttt caacacatgc ccattttttt gaatataccc
1901 aactatttca aacttagtat ccatgcactt cataatggtg catgctcttg
1951 aagatgttgg ttcatattct attctcttcc aattgtagtg gtatgctggg
2001 caatatgaaa agatgtggaa atcagtgaca caataatcaa agctcagact
2051 agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg
2151 gtataataca gaggcactga taagcacata acccgaacac tattaaatcg
2201 tatcttgtag acatcagtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 tcagtagggt caatttcatt ttagagatga agtcacaact attatttgtg
2301 cacctctcta tattggaaat gcttgaaaca aggtcttgac aggattctgc
2351 agaacaaact aatagtaaga tcatcaatac atatggtatg aatatcattc
2401 cattctctac ttttctaccg ttccttttta ctttatcaga aacattagtg
2451 ttaggagcaa tggagtcttc tacaactaat aggccctcct ctgcttcatc
2501 cactactcta actgttgaca tatctacaga cacttcatct acaacaggtc
2551 tcctatgaca tagtccaacc attgaatata gtaccttttt tagcagccaa
2601 aatgcaggtt ttaggaaaaa taagatattc attatggtga tgagagtgaa
2651 tactatcact ataacaaaaa acaagattat agagtacaat gaatatctat
2701 agatgtggga gcattgataa ttctttattc tcattatcat gtccattctc
2751 tcatacttgt cacaaatctc tcctgggtga caagttacat tttgacaacc
2801 acccttatca caaacttcaa tagtatcatc ataagttgga agtttgactg
2851 attcacaaga agggatggaa aatgtttggt cactcacatt gacctcacat
2901 gaagaattga tataatacag cacaccatct gtgcaagagg gcttgattgc
2951 aacaccatga tttatgattt cttcaggttt cttagcttgt gcaggttgaa
3001 tgcatgccct atcctcaaca gcatacacta ttcccaagaa accagttttg
3051 agatttgagt atgaaatctt ttcagaattg gaattagtta tcaatagagg
3101 gcttgatgtg tattctgttt gctgtatgcc aaccagagac acattctgca
3151 gggtagcatc atggcaactg atatagacgt gaccaccgaa cttagagaaa
3201 gaaggatgga gaggcagctt gtaatcgtag tttccagtgt agcatgtctc
3251 aaagtaattc acactagccc tattgtaaca aatcagacca ttttcaatga
3301 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg
3351 caagggacct tgacaatctc agatgcttcc ctctccctgt tcctcatcca
3401 agaatgggtg tcagggaaag gtattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcaa agaagttata
3501 cccagacttt gtgt