Sequence of DPV Allpahuayo virus
Allpahuayo virus strain CLHP-2472 segment L, complete sequence.
ACC No: AY216502
Dated: 2008-01-10 | Length: 7053 | CRC: -1883303732
ID AY216502; SV 2; linear; genomic RNA; STD; VRL; 7053 BP.
XX
AC AY216502;
XX
DT 05-JAN-2004 (Rel. 78, Created)
DT 10-JAN-2008 (Rel. 94, Last updated, Version 2)
XX
DE Allpahuayo virus strain CLHP-2472 segment L, complete sequence.
XX
KW .
XX
OS Allpahuayo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7053
RX DOI; 10.1016/j.virol.2003.08.016.
RX PUBMED; 14698659.
RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT "New insights into the evolutionary relationships between arenaviruses
RT provided by comparative analysis of small and large segment sequences";
RL Virology 317(2):191-196(2003).
XX
RN [2]
RP 1-7053
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT "Complete sequence determination and analysis of the large RNA segment of
RT arenaviruses";
RL Unpublished.
XX
RN [3]
RP 1-7053
RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT ;
RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
RN [4]
RC Sequence update by submitter
RP 1-7053
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT ;
RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
CC On Jan 9, 2008 this sequence version replaced gi:37787697.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7053
FT /organism="Allpahuayo virus"
FT /segment="L"
FT /strain="CLHP-2472"
FT /mol_type="genomic RNA"
FT /country="Peru"
FT /db_xref="taxon:144752"
FT CDS 31. .6636
FT /codon_start=1
FT /product="L protein"
FT /note="polymerase"
FT /db_xref="GOA:Q6XQI9"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR014386"
FT /db_xref="UniProtKB/TrEMBL:Q6XQI9"
FT /protein_id="AAP44538.2"
FT /translation="MDVHLIELRDLVRKWVPDDLELSEQKNIMLAQTQIRATVVESLKL
FT LSTIVEVDSCKKHSCVHNTSKTVNAILREHKIIGPTLPDVTPDGYCVIGDVLILLEVFV
FT RTNQESFEKKFNQDFEKLMQMSADLKKCGVTLVPTIDGRSTYYVDFIPDWVVERLRWLI
FT SRLMSSLREDGQEIEELEYERLISSLSSLENQSLGLESLLAMREKGLSYKETLDKLFLE
FT GMENKLTVDESRTRIMKMFQIFRTLLESGYLERKYQTTDREDMLKRLRDHEFIVCSKSV
FT EYTFDCPNCSVHLYKVLNLLLNQGSRGAPHQCLGEYMKTLSICNKIKSMKILNTRRNTL
FT LILDTIMLNKFLDLEKVFGHVVVERVMIMQSLMTVNDRLLSIDVLMEMLEKKMTRNPLW
FT FLKVNEKLRKLCPPEVYQSIEEYVHEVDRDHWFELKLTLHQTWPAKPLIDYKGKMRCTC
FT VEKDSNNKNQLSDLTEEKFQLLLKKLSSFCLGITNSLKTSAVAKLRVNQPDDYYGKVTC
FT SEVFFQSLDKEHSAVLLYQKTGEKSRAYGLAFNNVVTGQYTTEASFYCDPKRFFLPIMS
FT DVVLFRMCNEMLSWLDYLSDDVMLEVRTCLYRLVLSILCTPSKRVQVYIQGLRYFIMAF
FT VNEFHCTGLLDKLKVTALTESERYCMKLCDDLVVKVLNSVEDENMAKAFKFVLNTSYLC
FT HLITKETPDRLTDQIKCFEKFLEPKLDFGSVIVNPDSSCELTAGQEEQFYQGLEKLFTD
FT KKLESSYANKPGVCKEVLNVCMSLFNSGALEVKPLLNHDPITPSFTSTALDLSSNKSVV
FT VPKLDELGEVLTEYDYSKLVSSVVVDLVEHFKTKGKYVVSPRSLQYKIYKRLSNLVQQR
FT AGKGNKESELTEEEFLEQVTAEQLEVINKVETKVSRTLSGIKLSSDTENAKHDDDYHLK
FT KLWSKDIMVRIKAETSLHEVKDFNVDTLPFDLYRELVDAIYNDPAANSHYFSERIFNPC
FT PLELLIKNLTLKAYKEEDFFECFKYILISSNFDNKVGKYDHKNRSRLGLSSAALLVKDE
FT ARISMRESNSESIAKRLDKSFFTNSSLRNLCFYSDESPTERTSVSSNVGKLKFGLSYKE
FT QVGGNRELYVGDLNTKLTTRLVEDYAESLTSDMKYTCLNNENEFERALLDMKSVVRQSG
FT LAVSMDHSKWGPHMSPALFSLMLRGLDFRLKDGTLIDKEAVVNILSWHIHKMVEVPFNV
FT VEAYLKGFIKRGLGLMDRGGATRVEEFMFGYFDQGIVPSHISSVIDMGQGILHNLSDLY
FT GLITEQFIVYALDLCYSSSFMAYTSSDDEILLSISNSFKRNDGSMDMDLAIEALEFHYF
FT LSDRLNKFVSPKTVAGTFASEFKSRFFIWSQEVPLLTKFVAASLHNVKAKAPSQLAETI
FT DTILDQSVANGVSIEIIGAIAPRTNALITYSGHPFNLFLCLEETDVRDWVDGSRGYRLQ
FT RSIENAFPDDVLPEIIRSACRKIFYRIQSGTLEEDYIVTTLQQSPDDCLKQMLTSCDVE
FT KEAIDDICNYRWLNLRAHGDLRLVLRTKIMTSTRTLQKEEVPSLIKSVQSKLSKNFVRG
FT AKKILADAINKSAFQSCISSGFVGVCKSMGSKCVRDGKGGFKYIKDILKEIKHHEKPDC
FT HFCKELKGIYCSELLENISEFSRPLFWDYFSLVLSNACELGNWVFCKIEIPKSVYHLNN
FT PNHFWPIKPSSHAELEEKVGMNHVLYSIRRNFPVLFDEHISPYLSDLNMLKLNWVQKIR
FT FLDICVAIDMTSECLGIISHIIRRKREELYIVKQSELSMSHTRVSLPLERGFNIEPDEV
FT CHNFLLQILFESMIHPVLLTTSQFKRYFWYSEVELLPKEALHDLGQFTQFIIDCKVLNS
FT SRAMCLDDLDVGYVSSKVKRTDTYLNLSTFMTNLDWENRHEYSSFEDLILSSPSEVFLF
FT EITFTFSHIRRSHKFRYDRSTNYILKTKLVIEKSELVNGEDGVYCVTPHSIEYYVSQSS
FT GNHISLDGVSLLVLDPLISGRELVNMDELLQNQDVTFSAPSQILSKIKLDFKPFTKEIK
FT NKFSYKLIGPDVDMSPLHLDKGAIKEGDRIVSQIEIQVSFKSVITAIELLDEDQRKIFV
FT GNLFVYLTSLKSVNRALSMSESDLRLLVENYPSVIEYMLSGCDGWLNCGSFSLIKSKTL
FT QCIMLADERGPYRIKGQNCRRLFPTEEAIEIE"
FT CDS complement(6710. .6997)
FT /codon_start=1
FT /product="Z protein"
FT /db_xref="GOA:B0BLK0"
FT /db_xref="InterPro:IPR003224"
FT /db_xref="UniProtKB/TrEMBL:B0BLK0"
FT /protein_id="ABY59833.1"
FT /translation="MGLRYSKEVRDRHGDKDIEGRVPMTLNLPQGLYGRFNCKSCWFVN
FT KGLIACGDHYLCLGCLTRMLSRTDFCEICSKPLPKKIIFEDSPSAPPYEP"
XX
SQ Sequence 7053 BP; 2212 A; 1122 C; 1604 G; 2115 T; 0 other;
ay216502 Length: 7053 10-JAN-2008 Type: N Check: 9029 ..
1 cgcaccgggg atcctaggct ttccttgatc atggatgttc acttgatcga
51 attgagagat cttgtgagaa agtgggtccc tgatgacctg gaactgtcag
101 aacagaaaaa cattatgtta gcacagacac aaatcagagc aacagttgta
151 gagagcttaa aacttttgtc cacgattgta gaagtagact cctgtaaaaa
201 acactcctgt gtccacaaca ctagcaaaac tgtcaacgca atacttaggg
251 agcacaagat cattgggccc actttaccgg atgtgactcc agatgggtac
301 tgtgtgattg gggatgtatt aatactcctt gaagtgtttg ttagaacaaa
351 tcaagaatca tttgaaaaaa agtttaatca ggattttgag aagttgatgc
401 aaatgagtgc agatctgaaa aagtgtggtg taactcttgt gcctacaata
451 gatggcagaa gtacatatta tgttgatttt attcctgact gggttgtgga
501 aaggttaaga tggttgataa gcagattgat gtcaagtctt agggaggatg
551 gtcaagaaat tgaagagctg gaatatgaga ggctcatcag cagtctatct
601 agtcttgaaa accaaagttt agggcttgaa tcactattag cgatgagaga
651 aaaaggtctt tcctataagg aaacattaga taagttgttt ctagaaggaa
701 tggagaacaa gttgacagtt gatgagtcca gaaccaggat tatgaagatg
751 tttcaaattt ttaggacatt gttagaaagt ggttatctgg agaggaagta
801 tcaaacaaca gatcgagagg acatgttaaa aagattaagg gatcatgaat
851 tcattgtgtg ttctaaaagt gttgagtaca cttttgactg tcccaattgc
901 tctgttcatc tctataaagt gttgaatcta cttttaaatc aaggctcacg
951 aggtgctcct catcagtgtc tgggagaata tatgaagact ttatcgatct
1001 gtaataagat taagtcaatg aaaattttaa acaccagaag gaacactctt
1051 ctaattcttg acactataat gctaaacaag tttttagatc tagaaaaagt
1101 atttggtcat gtcgttgtag agagagtcat gatcatgcag tctttaatga
1151 cagtgaatga taggctttta tcaatcgatg tcttaatgga aatgttggag
1201 aaaaagatga ccaggaatcc gttgtggttt ttgaaagtta atgagaaatt
1251 aagaaaactt tgtcctcccg aggtgtatca aagtatagaa gagtatgtac
1301 atgaggttga cagggatcac tggtttgagt tgaaactgac actacatcaa
1351 acgtggcctg caaaacccct aattgactat aagggaaaaa tgaggtgtac
1401 ttgtgttgag aaggactcta acaataagaa tcaattgagt gatttgactg
1451 aagaaaaatt tcaactcctt ttaaagaaat tatcaagttt ctgtttgggg
1501 attactaata gcttgaaaac atctgcagtg gcaaaattaa gagtaaatca
1551 accagatgat tattatggga aagttacctg tagtgaagtg ttcttccaga
1601 gtcttgataa agagcattca gcagttctgt tgtaccagaa aactggtgag
1651 aaatcaaggg catacggtct tgcttttaac aatgtggtta caggtcagta
1701 tacaacagaa gctagttttt actgtgatcc caaaaggttc tttctgccta
1751 tcatgagtga tgttgtgttg tttagaatgt gtaatgaaat gctcagttgg
1801 ctggattatt taagtgatga tgtcatgtta gaagtaagga catgtctgta
1851 tagacttgta ttgtcaattt tgtgtactcc ttcaaagaga gtgcaagttt
1901 atattcaggg gttaaggtat tttattatgg cctttgttaa tgaattccat
1951 tgcactgggt tgcttgacaa gttgaaagtg actgcactca ctgaatcaga
2001 gcgctattgc atgaagttat gtgatgacct tgttgtgaaa gtattgaata
2051 gtgtggagga tgaaaacatg gcaaaagcct tcaagtttgt gttgaacaca
2101 tcttacttat gtcatctcat aacaaaggaa acccctgata ggctgacaga
2151 tcaaataaaa tgcttcgaaa agtttttaga acccaaattg gattttggga
2201 gcgtcattgt taatccagac tcatcctgcg agctaacagc aggacaagaa
2251 gaacagtttt atcagggttt ggagaagctt ttcacagata agaagttgga
2301 gtcatcatat gccaacaagc caggtgtttg caaagaggtt ttgaatgttt
2351 gtatgtctct atttaatagt ggcgcgcttg aggttaagcc attgttgaac
2401 cacgatccta taactccttc ctttacgagc actgcattag atttgtccag
2451 taataaaagt gtggtggtac caaaacttga tgaattgggt gaggtattga
2501 ctgagtatga ttattctaaa ctagtttcaa gtgttgtggt ggatctggtt
2551 gagcacttta aaaccaaagg aaagtatgtt gtatccccca ggtctcttca
2601 gtataaaatc tacaagagat tatcgaactt agttcagcag agggcaggga
2651 aaggaaataa ggagtcagag ttaactgagg aagagttctt ggaacaggtc
2701 actgcagaac agttggaggt tatcaataag gttgaaacaa aggtgtcaag
2751 aacattatca gggattaaat tgtcatctga tacagaaaat gcaaaacatg
2801 atgatgatta ccatctgaag aaactgtggt ctaaagacat tatggtgagg
2851 attaaggcag agacgagctt acatgaagtc aaagatttta atgttgacac
2901 attgccattt gatttataca gagaattggt ggatgcaatt tacaatgatc
2951 cagcagcaaa ttcccattat ttctcggaga gaattttcaa tccatgtcct
3001 ttagagttgc tcatcaagaa tctgacattg aaggcatata aagaagagga
3051 tttctttgag tgtttcaaat acattttgat cagcagtaat tttgacaaca
3101 aggtaggaaa atatgatcat aagaatcgta gtcgtttggg tttgtcaagc
3151 gcagcattgc ttgtcaaaga tgaagctaga atcagtatga gagagagtaa
3201 ttcagaatct atagctaaga ggctagataa gagtttcttt accaactcat
3251 cattaaggaa cctctgcttt tactcagatg aatcaccaac agagaggacc
3301 agtgtttcaa gtaatgttgg gaagttgaag tttggcttgt cttacaaaga
3351 gcaggtaggt gggaataggg aattgtatgt aggtgatttg aataccaagc
3401 ttaccacgag attggtggag gactatgctg aatcactgac atcagatatg
3451 aagtatactt gccttaataa tgaaaatgag tttgagagag cattgttaga
3501 tatgaaatca gttgtgaggc aaagtggtct agctgtaagc atggaccatt
3551 ccaaatgggg gccacatatg tcaccagcgt tgttctcact gatgttacgg
3601 ggtttagatt tccggcttaa agatggcaca cttatcgata aagaagcagt
3651 ggtgaacatt cttagttggc acattcacaa aatggttgaa gtacctttca
3701 atgttgttga agcatattta aaggggttca taaaaagggg gttgggattg
3751 atggatagag gtggtgcgac tagggttgag gaattcatgt ttggttattt
3801 tgatcaagga atcgtaccgt cacacatttc atcagtcatt gacatgggtc
3851 aagggattct acacaatttg tcggatttat atgggttgat aaccgagcaa
3901 ttcatagttt atgctttaga cttgtgttac tcatcttctt tcatggctta
3951 cacatcaagt gatgatgaaa tattgctttc catttctaac agttttaaga
4001 gaaatgatgg ttcaatggat atggacttag caattgaagc acttgagttc
4051 cactatttct tatctgatag acttaataaa tttgtaagtc cgaagactgt
4101 tgcaggaacc tttgctagtg aattcaagtc tagatttttt atctggtcac
4151 aagaagtacc cttacttacg aaatttgttg cagcatcact acataatgtg
4201 aaagcaaagg ctccttcgca gttagccgaa acaatagata ctattcttga
4251 tcagtctgtt gcaaatggtg tctccattga aattattggg gcaattgccc
4301 cgagaacgaa tgcgcttata acatatagtg ggcatccatt taatcttttc
4351 ttatgcttag aggaaacaga tgtgagagac tgggttgatg gatcaagagg
4401 gtatagattg caaaggtcta tagagaatgc atttcctgat gatgttctac
4451 cagaaattat tcgctctgcc tgcagaaaaa tcttttatag gattcaatca
4501 ggaactttag aagaggacta tattgtgaca acattgcaac aatcgccaga
4551 tgattgctta aaacagatgc taacatcatg tgatgtggag aaagaggcaa
4601 tagatgatat atgcaactat agatggttga atctaagagc tcatggggat
4651 cttagactcg ttcttaggac caaaattatg acatcaacta gaacattaca
4701 aaaggaggaa gtcccaagcc tgattaaatc agtgcagtcc aaactttcaa
4751 agaactttgt tcggggggca aagaagatct tagctgacgc aataaacaag
4801 tcagctttcc aaagttgtat ctcttctggc tttgttgggg tctgcaaaag
4851 tatgggatca aaatgtgtta gggatggtaa aggaggattc aagtacatca
4901 aagacatttt aaaagaaatt aaacaccatg agaagcctga ctgtcatttt
4951 tgcaaagagc tgaagggtat ttattgtagt gagcttcttg aaaacatatc
5001 agaattttct agacctcttt tctgggatta tttttcattg gtcctttcga
5051 atgcttgtga gttgggtaac tgggtctttt gtaagataga aataccaaaa
5101 agtgtgtacc acttgaataa tcctaaccat ttttggccaa tcaagccatc
5151 cagtcatgct gaattagaag agaaggtggg aatgaatcat gttctgtatt
5201 caattagaag aaatttccca gtgttatttg atgagcatat aagcccttat
5251 ttgtcagact tgaatatgtt aaagttgaat tgggtgcaaa agattagatt
5301 tctagacatt tgtgtagcaa ttgacatgac ctcagagtgt ttgggtatta
5351 tatcacacat cattagaagg aaaagagaag agttgtatat tgtgaaacag
5401 agtgaattgt caatgtctca taccagagtt tctcttccac tagagagagg
5451 attcaacata gaacctgatg aagtctgtca caattttctt ttacaaatat
5501 tgtttgagtc aatgatacac ccagtgcttt tgacgactag tcaatttaag
5551 aggtactttt ggtacagtga ggttgaactt ttgcctaagg aggcattgca
5601 cgatttagga cagtttactc agttcataat tgattgtaaa gtgttaaata
5651 gctcaagggc aatgtgtctg gatgatctag atgtaggtta tgttagtagt
5701 aaagtcaaga gaacagacac ctacttgaat ttatcaactt tcatgacaaa
5751 tcttgactgg gaaaatagac atgagtactc ttcatttgaa gacttgatcc
5801 tgagttcccc atctgaagtc ttcttatttg agatcacctt cactttttca
5851 catattagaa ggagccacaa gtttagatat gacagatcaa caaattacat
5901 tttgaaaacc aaattggtta ttgagaagtc tgaattagtt aatggggagg
5951 atggtgtcta ttgcgtgaca ccgcactcta tagagtatta tgtctcccag
6001 tcatctggta atcacatcag tctagatggt gtgtctttat tggtgttgga
6051 ccctctaatc tcaggtagag aattggtgaa catggatgaa cttttacaaa
6101 accaggatgt gacattttct gctccatcac aaattttaag caagattaaa
6151 ttggatttca agcctttcac caaggaaata aagaataagt tctcctataa
6201 gttgatagga cctgatgtag atatgtcacc attgcacctt gataaagggg
6251 caattaaaga aggtgacagg attgtttcac aaattgagat tcaggtgtca
6301 tttaagtctg ttatcacagc aatagagctt ttagatgaag atcaacgtaa
6351 gatctttgtg ggcaatttat ttgtgtattt aacttctctc aagtcagtta
6401 acagagcact atccatgtca gaatcagact tgaggctatt ggtggaaaac
6451 tatccaagtg taattgagta tatgttaagt ggttgcgatg gatggcttaa
6501 ttgtggctca ttctcactga tcaaaagtaa aacactacag tgtatcatgt
6551 tggctgatga gagaggtccc tataggatca aaggacaaaa ctgcagaaga
6601 ttgtttccaa cggaggaggc aatagagatc gaataaaccg cctggccccc
6651 gggggccggg ggggcccccg gcgcgccccc ggagggggcg cgcctggggg
6701 cctaccggcc tagggttcgt agggtggtgc tgatgggctg tcttcgaaga
6751 tgatcttttt tggcaagggt tttgagcaga tctcgcagaa gtcggttctg
6801 ctcagcattc ttgtcaggca cccaagacaa aggtaatggt cgccacaggc
6851 aatcaagcct ttattcacaa accagcaaga tttgcaattg aacctgccat
6901 agagaccttg aggaagatta agtgtcatgg gcactctccc ctctatgtcc
6951 ttgtcaccat gacgatctct cacttccttg ctatatctta gtcccatttt
7001 agaagaatcc acacacaatg cgtgaacaat aaaagcctaa gatcctcggt
7051 gcg