Sequence of DPV Oliveros virus
Oliveros virus strain 3229 segment L, complete sequence.
ACC No: AY216514
Dated: 2008-01-10 | Length: 7184 | CRC: 2063998312
ID AY216514; SV 2; linear; genomic RNA; STD; VRL; 7184 BP.
XX
AC AY216514;
XX
DT 05-JAN-2004 (Rel. 78, Created)
DT 10-JAN-2008 (Rel. 94, Last updated, Version 2)
XX
DE Oliveros virus strain 3229 segment L, complete sequence.
XX
KW .
XX
OS Oliveros virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7184
RX DOI; 10.1016/j.virol.2003.08.016.
RX PUBMED; 14698659.
RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT "New insights into the evolutionary relationships between arenaviruses
RT provided by comparative analysis of small and large segment sequences";
RL Virology 317(2):191-196(2003).
XX
RN [2]
RP 1-7184
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT "Complete sequence determination and analysis of the large RNA segment of
RT arenaviruses";
RL Unpublished.
XX
RN [3]
RP 1-7184
RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT ;
RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
RN [4]
RC Sequence update by submitter
RP 1-7184
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT ;
RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
CC On Jan 9, 2008 this sequence version replaced gi:37787721.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7184
FT /organism="Oliveros virus"
FT /segment="L"
FT /strain="3229"
FT /mol_type="genomic RNA"
FT /country="Argentina"
FT /db_xref="taxon:42764"
FT CDS 31. .6735
FT /codon_start=1
FT /product="L protein"
FT /note="polymerase"
FT /db_xref="GOA:Q6XQH7"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR014386"
FT /db_xref="UniProtKB/TrEMBL:Q6XQH7"
FT /protein_id="AAP44550.2"
FT /translation="MDESVSSLFDLLRKHFPAKEEISRQITVVTSQTEMRMILTEGFKL
FT LSLLIELDSCEVNNCSHNKEDLTVEAILSKDNILTIALPRIVPDGYSLYGNVLILLETF
FT VRVNPSSFEQKYNQDMNKLLSLKNDLQLCGITLVPLVDGRTNYYNKFVDDWVIERFRWL
FT LTQIMKVAKESGESIEELEYQRLVTSLSKLENQSLGFENIIKMPQTGIDYRDKLKARMF
FT ANLSNKMKESEINQSLLSLKLAFDEAYNDESHLKKFQKTNKEDLIFKLGQQINLSDEKL
FT SCMSCSSKLFSIVSSITQNRDKLDSHVMSVSNAKLWHHESGIANVNEYLRILSVCNKIK
FT SAKILNTRRNTLLFLDMIVLNFIDDCWKNDPTILFQFKKSGLLVGQLAYFVNDRFFDLL
FT LLKELLSKKLKSSPDWIHRCLCNIRKQEFFDISGVEFWIRQPDYESVEELCCALEPVKP
FT KLQYCRDEDNHENHKLDLADKDNYFTCLSVLSSVCLGLVNSMKTSFTSKMVINEKSPNN
FT FYGEVELKECYCQRFYVSDEITGLLFYQKTGEKSRCYSIGVTMHGSYKYIGSFYCDPKR
FT FFLPIFSQVVLFQMTEEMMSWLPEEPSYKEPVVANLRKLILMLLCNPSKRNQNFLQGMR
FT YFIMAYVNQFHSVELMSKLEVPCKSVSEECVQKLTYNLLVDVLTKGDVNEHMTRKFKFC
FT LNVSYLCHLITKETPDRLTDQIKCFEKFLEPKLKFKSVIINPNLTGDLTEEQEEQLLNS
FT IEKLLGKGLQDINDSSEPGISRELLSMCISAFNRDLLRVNGKLKNDPYKPNFTSTALDL
FT SSNKSVVIPKLDELGNPISKYDYELLVSSCIASMAESFKTKGKYKLDPTSQEFLILKNL
FT YSLMSKSKRDDHMKDSEDSKQNLSSDLENLSEEQVLILEQVKRDVNLALSKMRETKLKE
FT KTEARQSSSGSSLKNQQKRQAELQERLSELWSEFMCMKIITVEVSLHEIKDFDPDLIDH
FT TTLKSMLDKLYNSDLASEFFLEEILNPCPLEFLVKNMTTSSYLEGDLFECFKYTLISAG
FT FDQKLGTYEHKNKTRLGFKYEALKVREEGRMSLRESNSEAIARRLDRSVFSNSALRNLC
FT FYSDESPISYSHVSSDTGKLKFGLSYKEQVGSNRELYVGDLNTKLMTRLIEDFSESVVS
FT NMNYSCLNSEKEFERSVMEMKMSVNLGEMNFSLDHSKWGPYMSPVIFAAFLQGLKLEQG
FT SMCTPVSVEPIITLLSWHIHKVVEVPYNVIHAYMTGMIKRQLGLMSPGESSKTEAFIHR
FT LLVDEREPLSHVMSVLDMGQGILHNTSDLYGLVTEQFINYAMRILYDVSMTSFTSSDDQ
FT ITMVKLNEDLKDMDNPEVISNWERMINFHTFISSKFNKFVSPKTVIGTFAAEFKSRFFV
FT WGEEVPLLTKFVSAALHNIKCKTPIQLSETIDTISDQCVANGVSVEIVSCISNRTNKLV
FT RYSGFPDNPFLSVENMDVKDWVDGNRGYRLQRNIESHLEVDGCTRFVRQAARKVFRNIK
FT SGKIMEQTLVNLVQEDGDKAFQGFMKSVDVSDDDIKLLQNFRWINLSTHGDMRLVLRTK
FT LMSSRRIIEQEEIPGLIKSIQSKLSKNFVRGAKRILADSINKSAFQSSIASGFIGFCKS
FT MGSKCVRLGGGGFGYIKDIKNKVKHDCLCDICFRWRGCVYCPSSCADVFEFSRPLMWDY
FT FTLVLTNACELGEWVFEDVEIPKDLYFLRNPNLFWLVKPRVTCQLEERLGLSHILQSIR
FT KNYPTLFETHLSPFMSDFMVGKTLGSLTVKFLDLCVALDLANENLGITKHFLKERRHEI
FT YVVKQDESSQSHIRNVKGIESSVELNSMQVCNNFLTQLLMSSFIQPLVLTSSVFKKFNW
FT FAEVLCLKTEEEVCLKQLTDFVLQVKKFNVDRAMHIEDLSAGYISSTINVTSFSLSVPT
FT FLECVDSDFINKEGNEPGDFKDLLSSEFTKDTLTLDFCIQVSHIKRSVKFNVKRTLVYT
FT LAVRTQIEKKIILEAIGTDDQISLIVSELDLFCSGHTGNHFVLDAAPLIYSEPLIAGSL
FT KFDLLSMLRDQELSLTSSEKMPTFNFDFSSQKHHIVNKFAYKLVGPSVYDEPLVLNKGI
FT VYSGERKLTSLGVDVSGERIVQAMGELDSISEQELFLTNLWGYSKETDIKVRIIQDNLK
FT ILTDNYFVQLKNSLKTFAEWLNLGNYMLCYSKTLDTIMISDVSGRIKLKGVICRKLIED
FT EVMEVE"
FT CDS complement(6817. .7116)
FT /codon_start=1
FT /product="Z protein"
FT /db_xref="GOA:B0BLK7"
FT /db_xref="InterPro:IPR001841"
FT /db_xref="InterPro:IPR003224"
FT /db_xref="UniProtKB/TrEMBL:B0BLK7"
FT /protein_id="ABY59840.1"
FT /translation="MGSKSSKSSGFENVPSLGLSHTNQPRVSLIREARPSLYGRYNCKC
FT CWFQNKNLVECSDHYLCLKCISSMLRRGQNCEICGKPIPTHIAVTTAPTAPPEP"
XX
SQ Sequence 7184 BP; 2320 A; 1207 C; 1506 G; 2151 T; 0 other;
ay216514 Length: 7184 10-JAN-2008 Type: N Check: 9615 ..
1 cgcaccgggg atcctaggca ttccttgatc atggatgaaa gtgtgtcttc
51 gctttttgat ctcctcagga aacactttcc tgctaaagag gagatcagtc
101 gtcagatcac tgttgtcacc tcacaaactg aaatgagaat gattctcaca
151 gaaggcttca agctactctc actattgatt gagttggact catgtgaggt
201 aaacaattgt tctcacaaca aagaggatct cacagttgag gcaatcctca
251 gtaaagacaa cattcttaca atagctttac caagaattgt acctgatggc
301 tacagtcttt atggaaatgt gctaatactg ctagaaacct ttgtcagagt
351 gaacccgtca tcatttgaac aaaagtacaa tcaagacatg aacaaactct
401 tgtccttaaa aaatgatctt caattgtgtg gcataaccct tgtccctttg
451 gttgatggaa gaacaaatta ttacaacaag tttgttgatg attgggtgat
501 cgaaaggttc agatggctgt tgactcaaat tatgaaggtt gctaaggaaa
551 gtggtgagag cattgaggaa cttgaatatc aaaggcttgt gacaagtctg
601 tctaaactag aaaatcaaag cttgggattt gagaatatta ttaaaatgcc
651 acaaactggt attgattata gagacaaatt gaaagctaga atgtttgcca
701 atctatcaaa taagatgaag gaatcagaaa ttaatcaaag tttattaagc
751 cttaaactag cttttgatga ggcatacaat gatgaaagcc acctaaaaaa
801 gtttcagaag actaacaaag aagacttaat ctttaaactg ggccaacaaa
851 tcaatctaag tgatgagaag ttgtcatgta tgtcctgcag ttcaaagtta
901 ttttccatag tgagctctat cactcagaat agagacaaac ttgattctca
951 tgtgatgtca gtaagtaatg ccaagttatg gcatcatgaa tcaggcattg
1001 ccaatgtgaa tgagtacctt cggattttaa gtgtgtgtaa taaaatcaaa
1051 agtgccaaaa ttttgaatac tagaagaaac accctcttat tcttggacat
1101 gattgttttg aatttcattg atgactgttg gaaaaacgac ccaacgatac
1151 tttttcaatt taagaaatct gggcttctgg tggggcagct agcatacttt
1201 gtaaatgata gatttttcga tctactctta ttaaaagaac tattatctaa
1251 aaagctgaag agttctcctg attggataca cagatgttta tgcaatataa
1301 gaaagcaaga attctttgac atctctggtg tagagttttg gatcagacaa
1351 cctgattatg aaagtgttga ggagctttgt tgtgcacttg agcctgtaaa
1401 acccaaactt caatactgta gagatgagga caaccatgag aatcataagt
1451 tggatttggc agataaggat aattatttta cctgcctaag tgttctttca
1501 tctgtgtgtc ttggacttgt aaattctatg aaaacctcct ttacttctaa
1551 aatggtaatt aatgaaaagt ccccaaataa cttttatggt gaggttgaat
1601 tgaaagaatg ttattgtcaa agattttatg tctctgatga aataaccgga
1651 ttgctttttt atcagaagac aggggagaag tcaaggtgtt attcaattgg
1701 tgtaaccatg catggctcat acaaatacat tggctctttt tactgtgatc
1751 caaaaaggtt ctttttgccc atattttcac aagtagtctt atttcaaatg
1801 actgaagaaa tgatgagttg gttgccagaa gaaccttctt ataaagaacc
1851 agtggttgca aacttgagga aactcatttt gatgctactg tgcaatccgt
1901 caaaaaggaa ccaaaatttc ctacaaggta tgagatactt cataatggct
1951 tatgtaaatc aattccacag tgtggaattg atgagcaaac tagaggtgcc
2001 atgtaaaagt gtttccgagg agtgtgtcca gaagctgaca tataatcttc
2051 tagttgatgt tttgaccaaa ggggatgtca atgaacatat gactagaaaa
2101 tttaaatttt gtttgaatgt tagttatcta tgccacctaa taacaaaaga
2151 aacacctgac agactaactg atcagattaa gtgctttgag aagttcctag
2201 aaccaaaact gaagttcaaa tcagtaatca tcaatcccaa ccttactggt
2251 gacctcactg aggaacaaga agaacaactc ttgaatagca tagagaagtt
2301 gctgggcaaa ggtttgcagg acatcaatga ctcatcagag ccaggtattt
2351 ctcgtgaact cttaagcatg tgcatctcag ctttcaacag agatttgttg
2401 agagtcaatg gcaagttgaa aaatgatcca tataaaccca atttcactag
2451 tactgcactt gatttgtcta gcaacaagag tgttgtgatt ccaaaacttg
2501 atgaactggg caatccaatt tcaaagtatg attatgaatt gcttgtatcc
2551 tcatgcattg catcgatggc agagtcattc aaaacaaaag gtaaatacaa
2601 gttggatcca acatctcaag agtttcttat ccttaagaat ttgtatagct
2651 tgatgagcaa atccaagagg gatgatcata tgaaagactc agaggactca
2701 aagcaaaact tatcttcaga tttggagaat ttatcagaag agcaagtttt
2751 aattctagaa caagtcaaaa gagatgtgaa tttggctttg tcaaaaatga
2801 gggaaacaaa attaaaagag aagacagaag ccaggcaatc atcatcaggc
2851 tcctctctta aaaatcaaca aaagagacaa gctgaactgc aagaaaggct
2901 ttcagagctc tggagtgaat ttatgtgcat gaaaattatt actgttgagg
2951 tctctttgca tgaaattaaa gattttgatc ctgatctgat cgaccacaca
3001 accttgaaat ctatgttgga caaattgtac aattcagatt tggcttcaga
3051 atttttctta gaagagattc tcaatccttg tcctcttgag ttcctagtta
3101 agaatatgac aacatcatcc tatttggaag gtgatctatt tgaatgtttt
3151 aaatacacat tgatcagtgc agggtttgac cagaaactgg gtacctatga
3201 gcataaaaac aagacaagat tggggtttaa atatgaagct ttaaaagtaa
3251 gagaggaagg caggatgagt ctcagagaaa gcaactctga agcaattgct
3301 cgaaggttgg ataggtcagt gttttcaaat tctgccttaa ggaatctatg
3351 tttttattct gatgagtcac ccatttcata tagtcatgta tcatctgaca
3401 ctggtaaact aaaatttggt ttgagttata aagaacaggt gggatctaac
3451 cgtgagttat atgtcggtga tttaaatacg aaactcatga caaggctcat
3501 tgaggatttt tcagaatcag ttgtctcaaa catgaactat tcatgtttaa
3551 atagtgaaaa ggagtttgaa agatctgtga tggagatgaa aatgagtgtc
3601 aaccttgggg agatgaattt tagtttagat cactcaaaat ggggaccata
3651 tatgtctcca gtcatctttg cggcttttct tcaaggattg aagttagaac
3701 agggatcaat gtgcactcct gtttcagttg agcccataat aactctgctg
3751 tcatggcata tccataaagt tgtggaagtt ccttataatg ttatacatgc
3801 atacatgact ggcatgatta aaagacagct tggattgatg agccctggag
3851 aatcatctaa gacagaggca tttatccacc ggttgttggt ggatgaaaga
3901 gaacctctga gccatgtgat gtctgttttg gatatgggtc aaggcattct
3951 tcacaacact tcagacttgt acggtttagt aacagaacag ttcatcaatt
4001 atgctatgag aattctttat gatgttagta tgacttcatt cacatcaagt
4051 gatgatcaaa taacaatggt caaattaaat gaagatttga aagatatgga
4101 caatcctgag gtgatatcca attgggaaag gatgatcaat tttcacacat
4151 tcatatcatc aaaattcaat aaatttgtaa gccctaaaac agtaattggc
4201 acttttgctg cagaattcaa atcaagattt tttgtttggg gagaagaggt
4251 tcccttatta acaaagtttg tttctgctgc attacataac ataaaatgca
4301 aaacaccaat acagttgtcc gaaaccattg acacaatctc tgatcaatgt
4351 gtggctaatg gagtttcagt ggagattgtg tcttgcatct caaacagaac
4401 taataaactg gtaagatata gtggttttcc tgataatccc tttttaagtg
4451 ttgagaatat ggatgttaaa gattgggtag atggaaacag aggatatcga
4501 ctccaaagga acattgaatc acatttggag gtggatgggt gtactagatt
4551 cgttcgccag gctgccagaa aagtttttag aaacattaag tcaggtaaaa
4601 ttatggaaca gactcttgtt aacttagtgc aggaagatgg agacaaggca
4651 tttcaaggtt tcatgaaaag tgtggatgtt tctgatgatg acatcaagct
4701 attacaaaac tttaggtgga ttaatttgtc tacacatggt gatatgagat
4751 tggtgctgag aaccaaattg atgagttcta gaagaattat agagcaggaa
4801 gaaatcccag gccttataaa gtctatacag tctaaattat ccaagaattt
4851 tgttagagga gcaaaacgta tattagcaga ttccatcaat aaatcagcat
4901 tccagtcatc aattgcttca gggttcatag gattttgtaa gagcatgggc
4951 agtaagtgtg ttagacttgg tggaggagga tttggatata ttaaagacat
5001 taaaaataaa gtaaaacatg attgtctttg tgacatatgt ttcagatgga
5051 gaggctgtgt ttactgtccc agctcgtgtg ctgatgtctt tgaattcagc
5101 agacccttaa tgtgggatta ctttacactt gtgttgacta atgcatgtga
5151 actgggagag tgggtttttg aagatgtgga aatcccaaaa gatctgtatt
5201 ttttgagaaa tccaaatctc ttctggctgg tgaaaccaag agtaacctgt
5251 caactggaag aaagattggg tctctcccat atcttgcagt caattagaaa
5301 aaactatcca acactcttcg aaacgcatct ctctcctttc atgagtgact
5351 ttatggttgg taaaacctta gggtctctga ctgttaagtt cttggattta
5401 tgtgtagcgt tagacctggc taatgagaac cttggaataa caaaacattt
5451 tctgaaggaa agaaggcatg agatctatgt tgttaagcaa gatgagagct
5501 cacaatcaca catcagaaat gtcaaaggca ttgaaagttc agttgagtta
5551 aactcaatgc aagtgtgcaa taatttctta acacagctcc tgatgagctc
5601 tttcatacag ccacttgtct tgactagctc tgtgttcaaa aagtttaact
5651 ggtttgctga ggtcctctgt ctgaaaacag aagaagaagt ttgtctgaag
5701 caattgacag attttgtcct tcaggtcaag aaattcaatg tggacagggc
5751 aatgcatatt gaagacctaa gtgccggtta cattagttca accatcaatg
5801 tcacaagttt tagtttatca gtccccacct ttcttgagtg tgttgattct
5851 gatttcatca acaaagaagg aaatgaacct ggtgatttta aggatttatt
5901 gagttcagag ttcacaaagg acacattgac tcttgatttt tgtatccaag
5951 tatcacacat taaaaggtca gtcaaattca atgtgaaaag gacacttgtc
6001 tatactcttg ctgtgagaac tcaaattgag aaaaagatca tcttagaagc
6051 aattgggaca gatgatcaga ttagcttaat agtctcagag ttggatctgt
6101 tttgtagtgg acacactggc aatcattttg tgcttgatgc agctccttta
6151 atttacagtg agccactaat agcaggatct ctaaaatttg acctcctttc
6201 aatgttgaga gaccaggaat tatctctcac atcaagtgaa aaaatgccca
6251 catttaactt tgattttagt tctcaaaaac accacattgt gaataaattt
6301 gcatacaagc tcgtaggacc ctctgtctat gatgaaccct tggttttgaa
6351 taaaggcatt gtttattctg gggagagaaa gctcacttct ctaggagttg
6401 atgtcagcgg agaaagaata gtgcaagcaa tgggtgaatt ggacagcatc
6451 tcagaacaag agttgttcct gaccaactta tggggatact caaaagaaac
6501 tgatattaaa gtcaggataa ttcaagacaa tctaaagatt ttgactgaca
6551 actattttgt gcaacttaaa aattccttga agacctttgc tgagtggctt
6601 aatttaggca actacatgct atgttatagc aaaacattag acactattat
6651 gatttcagat gtcagtggca ggataaagtt aaaaggtgtt atatgcagga
6701 aattgattga ggatgaagtc atggaggtgg agtaaacacc accccgggct
6751 cagccccggg ggggcccccg gggcgaggga cccccttggg ggtccctcgc
6801 cgggggagcc cgtgtttcag ggctctggag gtgctgttgg agcagtggtc
6851 acagcgatgt gggttggtat cggtttccca cagatctcac aattctgacc
6901 ccttctgagc atagagctta tacactttag acaaagataa tggtcactac
6951 attccaccaa gttcttgttt tgaaaccaac agcacttaca attgtatctc
7001 ccataaagtg agggtcttgc ctcccttata agagataccc ttggttgatt
7051 ggtgtgagaa agccctagtg aaggaacatt ctcaaaacca gagcttttgg
7101 agctctttga tcccattttg tgactctttt cacaccttga aaacctagaa
7151 gcgtgaacag tttgtgccta ggatccccgg tgcg