Sequence of DPV Amapari virus
Amapari virus strain BeAn 70563 segment L, complete sequence.
ACC No: AY216517
Dated: 2008-01-10 | Length: 7046 | CRC: 602210815
ID AY216517; SV 2; linear; genomic RNA; STD; VRL; 7046 BP.
XX
AC AY216517;
XX
DT 05-JAN-2004 (Rel. 78, Created)
DT 10-JAN-2008 (Rel. 94, Last updated, Version 2)
XX
DE Amapari virus strain BeAn 70563 segment L, complete sequence.
XX
KW .
XX
OS Amapari virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7046
RX DOI; 10.1016/j.virol.2003.08.016.
RX PUBMED; 14698659.
RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT "New insights into the evolutionary relationships between arenaviruses
RT provided by comparative analysis of small and large segment sequences";
RL Virology 317(2):191-196(2003).
XX
RN [2]
RP 1-7046
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT "Complete sequence determination and analysis of the large RNA segment of
RT arenaviruses";
RL Unpublished.
XX
RN [3]
RP 1-7046
RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT ;
RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
RN [4]
RC Sequence update by submitter
RP 1-7046
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT ;
RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
CC On Jan 9, 2008 this sequence version replaced gi:37787727.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7046
FT /organism="Amapari virus"
FT /segment="L"
FT /strain="BeAn 70563"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /db_xref="taxon:45218"
FT CDS 31. .6612
FT /codon_start=1
FT /product="L protein"
FT /note="polymerase"
FT /db_xref="GOA:Q6XQH4"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR014386"
FT /db_xref="UniProtKB/TrEMBL:Q6XQH4"
FT /protein_id="AAP44553.2"
FT /translation="MDEKINSLKDFVRKQVPEIPELSYQRELLLSQVEMGMILMEGFKL
FT LSCLVEIESCKKNSCEHNSSQKFVDVILSDNGVVTPTLPKVIPDGFRFFNKTLILLETF
FT VRVNPEEFEKKWKRDMSKLLTLKEDVQKAGITLVPIVDGRCNYNTNLMPDWATERFRWL
FT LIDLLRESRGDSKIDIEEQEYQRLVHSLSKTGNQSLGFENIECLKRHCLNYESRLDESL
FT LTGFNNDLRESKIREGLIKMKNWYRKEVFVKGMGNFVKTDKAKLLQSLESLGLHANSGT
FT SECPFCCCKILDICYKLMQKLKHGHSLSEGIPDEFIAKSQIEKEYLLVLSVCNKIKGKK
FT VFNTRRNTLLFLDLIMLNFVIDVFENNPTELCFLKESGLIIGQMLLFSNDRVLDILSAR
FT KLLKKKLEISAHWVKKCNSILKRAEPDLWDYVSKYITEPKFDSLTSLAEELCTERPVMR
FT YKVQIHSGDGCSHKEFETLSEQQQICLFKCLSHVSLSLTNSMKTSFSSRLLVNEVDHKK
FT YFGTVRLKECYVQKFFLTNELYGLLFYQKTGERSRCYSLYLSDKGQLKEVGSFYCDPKR
FT FFLPIFSDTVLLLMCAEMVSWLDFCEELAREVDPLLRLLVLSILCSPSKRNQTFLQGLR
FT YFIMAFVNQAHHVQLMSKLVVECKSASDVLIQRLSVRMFRMVLDFGSDPDAFMSRKFKF
FT LLNVSYLCHLVTKETPDRLTDQIKCFEKFLEPKLEFGFFVVNPSLNGTLTKEQEDAMVG
FT GVSKFFSKDIFNIEDMKQPGVSRDLLSYCLTLFNKGKLKVNGSLKVNPFRPSFTSTALD
FT LSSNKSVVIPKLDELGNIVSVYDKQKLVSTCVASLVERFKTKGKFNLDPNEIEFLIMDN
FT LTNLLAIKGSAVKEREELSMLYEQLSDDAIKAFEELRQDVEFTLGRMRTPEKKKKTTNF
FT YGNCTLESLWAPFNVMKAIRTETSIHEIRDFDPNILPPEIYEELCTSVFESSLKESFFL
FT NEVLDICPLELLLKNLTTRCFEEQEFFDCFKYLLIHAGFDQRLGTYEHKSKSRLGLSED
FT VFKLRDDVRMSQRESNSEAIARRLDKSFFTSAALRNLCFYSEESPTEYTCISPNTGNLK
FT FGLSYKEQVGSNRELYVGDLNTKMMTRLVEDFAEAVAKSMNYTCLNSEKEFEKAICDMK
FT MAVNAGDICCSLDHSKWGPFMSPALFLSFINELKLKDHETSALIDCRPVLSVLRWHLHK
FT AVEVPFNVAEAYCTGMLKRRLGLMSLQSQSVSEEFFHQQLLMGKEVPSHIMSVLDMGQG
FT ILHNLSDLYGLITEQFLNYCLDLLFDVVPISYTSSDDQITMIKFPTTNAPEGGESQSDW
FT LEVLCFHDFLSSKLNKFVSPKSVCGSFAAEFKSRFFVMGEETPLLTKFVSAALHNVKCK
FT TPTQLAETIDTICDQCVANGVGVTIVGEISKRVNRLIKYSGYPQTPFLAVEVQDVKDWV
FT DGSRGYRLQRNVENCLSDHPQLELIRKSAKKVLTKIKRGLIFEEHLVQLIGKGGDNAME
FT AFLSYIDCSEIEKREALRYRWLNLSSNGDLRLVLRTKLMSARRVLEKEQIPTLIKTLQS
FT KLSKNFSRGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFLYIKDVISK
FT VKICSCDICSLAPGIVFCDEALENVSMFSRPILWDYFSLVLTNACELGEWVFSCVQIPP
FT KPTLLSNPNLFWAVKPRGVRLVEDQLGLNHVLQSVKRNYPKIFEEHLVPFMSDLQVSRT
FT TDFTKLKYLDVCIALDMMNENLGIISHLLKGRDNSLYIVKQNECASAHVRQVEYVDYDV
FT GLSPQQICSNFKIQLTFSSFINPLVMTTSTLRSFFWFGEVLRLEDENQIDVGELTDFVL
FT LIKKYNVDRAMMLDDLTMGFVVSEIGEPKFRLLDFEWSGVEEQTSFPLSENSNNNEIKF
FT TLNLQLEHKRLSTKYRLTRLVVYSYTMVCVMLVNDSRGVLKVENLTLRASGDVKEHRFL
FT DGVTLVSHHPTLCGKRGINILDLFRDAELPIPETRMFPEEVFLDLSDYQSEVEDKYAYE
FT IVGPEFSDVPLVMSGGCLVVGDKKLSHLLTELTGNVILKALGALETDGEIGSFLMGLWP
FT YIKATKQRVKISQEEFLFIYETHRRSLLMSFEAYNDWLEFLDFSVCFSKTLGDLVVSDS
FT SGNMRLRGVVCRPLRQVGTVMEIE"
FT CDS complement(6703. .6990)
FT /codon_start=1
FT /product="Z protein"
FT /db_xref="GOA:B0BLK8"
FT /db_xref="InterPro:IPR003224"
FT /db_xref="UniProtKB/TrEMBL:B0BLK8"
FT /protein_id="ABY59841.1"
FT /translation="MGNCNVKQETQPQSTRPKTTSTETELLRTPPVSLHGRYNCKCCWF
FT ADKNLVVCSDHYLCLRCLNLMLRTSDLCNICWKPLPTRIAIPVEPSAPPE"
XX
SQ Sequence 7046 BP; 2123 A; 1113 C; 1626 G; 2184 T; 0 other;
ay216517 Length: 7046 10-JAN-2008 Type: N Check: 4506 ..
1 cgcaccgagg atcctaggcg aaatttgact atggatgaaa agatcaattc
51 tttgaaagac tttgtgagaa agcaggttcc tgaaatacct gaactttcct
101 atcaaagaga acttttgtta tctcaggtgg agatgggcat gattttaatg
151 gaaggcttta agttactttc ctgtttagtt gagatagagt cctgtaagaa
201 gaattcctgt gagcacaact caagtcagaa gtttgttgat gtaatcctat
251 ctgacaacgg agtggttact ccaactttgc ctaaggtaat tcctgatggc
301 tttagatttt ttaataaaac attgattctt cttgaaacct ttgttagagt
351 taaccctgaa gagtttgaaa agaaatggaa gcgtgatatg tcaaaattgt
401 taacattaaa agaagatgtt cagaaagcag ggatcacttt agtgccaatt
451 gtggatggaa gatgcaatta caacaccaat ctgatgccag attgggcaac
501 agaaagattt aggtggttgc ttattgactt gttgagggaa tcaaggggtg
551 attcaaagat tgacatcgag gaacaggaat accagaggtt ggttcacagt
601 ttgtccaaaa ctgggaatca gagtttagga tttgaaaata ttgagtgtct
651 caagagacat tgtctcaatt atgaaagtag actggatgag agtttattga
701 caggtttcaa taatgatctt cgagaatcta aaatcagaga aggtttaata
751 aaaatgaaga attggtatag aaaggaggtt tttgttaagg ggatgggtaa
801 ttttgtcaaa actgacaagg caaagctatt gcaaagcttg gaaagtctgg
851 gtttgcatgc taattctggg acttcagaat gtcctttttg ctgttgtaaa
901 atacttgata tttgttacaa attgatgcaa aaattaaagc atggtcattc
951 tttatctgaa ggaattcctg atgagttcat tgcaaaatca cagattgaaa
1001 aggaatatct tttggttcta tcagtgtgca ataaaataaa aggaaaaaaa
1051 gtctttaata ctagaagaaa cactctgttg ttcttagatt taattatgct
1101 caattttgtt attgatgttt tcgaaaataa tcctactgag ttgtgtttct
1151 tgaaggaatc aggactcatc atcggacaaa tgttgctgtt ttcaaatgac
1201 agagtgttgg atatcttatc tgccaggaag cttttaaaga agaaattgga
1251 aattagtgcc cactgggtga agaaatgtaa ctcaatttta aaaagggcgg
1301 aaccagacct ttgggattat gtttcaaaat atatcacaga acctaagttt
1351 gatagcctta cctcactagc tgaagaatta tgtactgaga ggccggtcat
1401 gaggtacaag gtgcaaattc actcaggaga tgggtgctca cacaaggaat
1451 ttgaaacctt atcagagcaa cagcagattt gtctttttaa atgtctttct
1501 catgtgtctt tgtcattaac caattccatg aaaacctcat tttcatccag
1551 attgttagtg aatgaggtgg accacaaaaa atatttcggc actgttagat
1601 tgaaagaatg ttatgttcaa aagttctttt taaccaatga gttgtacgga
1651 cttttgtttt atcaaaaaac aggtgaaaga tcaaggtgct actcattgta
1701 cttgtcagat aaagggcaac tcaaagaggt tggttccttt tactgtgacc
1751 caaagcgatt cttcctcccc atcttttctg atacagtact cttgttaatg
1801 tgtgcagaaa tggtgagctg gctagatttt tgtgaggaat tagctagaga
1851 agtggaccct cttttaagac tactggtgct tagcattctt tgctcccctt
1901 ctaaaaggaa tcaaactttc ctacaaggac taaggtactt cattatggcc
1951 tttgtaaacc aagctcacca tgttcaattg atgtctaaac tagtagtaga
2001 atgtaaatct gcatcagatg tattaataca gaggctaagc gtgaggatgt
2051 tccgaatggt tttagatttt ggttcggatc ctgatgcgtt tatgtcaaga
2101 aagtttaaat tcctactcaa tgtaagctac ctttgtcatc tagtgacaaa
2151 ggaaactcct gataggttaa ctgatcagat aaaatgtttc gaaaagtttt
2201 tggaacccaa attagaattc ggtttctttg ttgtgaatcc ctctctcaat
2251 ggcacattga cgaaggaaca agaagatgcc atggtgggtg gcgttagcaa
2301 attcttttct aaggacatct tcaatataga agatatgaaa cagccagggg
2351 tttctagaga cttgctgagt tattgtttga cactgtttaa caaaggtaag
2401 ctaaaagtta acggtagttt gaaggtgaat ccatttagac caagttttac
2451 aagcacagca ttagacttgt ccagtaataa aagtgttgtg ataccaaagc
2501 tagatgagct tggaaacatt gtttctgttt atgacaagca aaagctggtt
2551 tcaacttgtg tggcatcatt agttgagaga tttaaaacaa aaggcaaatt
2601 caatctggac ccgaatgaga ttgagttttt aatcatggat aatctgacaa
2651 atttgctggc tattaagggt tctgctgtga aagagagaga agagttgtct
2701 atgttatatg agcagctatc cgacgatgcc ataaaggctt ttgaagagtt
2751 aagacaagat gtagaattta ctcttgggag aatgagaact ccagaaaaaa
2801 agaagaagac aacaaacttt tatggcaatt gtacattgga gtccctttgg
2851 gctcccttta atgtcatgaa ggcgattaga actgagacta gcattcatga
2901 aatcagagac tttgatccca atattttgcc acctgaaatt tatgaagaat
2951 tatgcacatc tgtttttgaa tcgtcactaa aggaatcttt ctttctaaat
3001 gaggttcttg atatttgccc actcgaactt ttattgaaga acttgacaac
3051 aagatgtttc gaagaacagg agtttttcga ttgctttaag tatttattaa
3101 ttcatgctgg gtttgatcag agattaggta catatgagca caagagtaag
3151 tctaggttag ggttatctga agatgtgttt aagctgagag atgatgttag
3201 aatgagtcaa agggagagta actctgaagc catcgcaagg aggcttgata
3251 aaagcttctt caccagtgca gctttaagga atctatgctt ctattcagaa
3301 gaatccccta cagaatacac ttgtattagt ccgaacactg gcaatttgaa
3351 gtttggttta agttataagg aacaagttgg ttctaatagg gagctttatg
3401 taggtgacct taatacaaaa atgatgacaa gacttgtaga ggattttgct
3451 gaagctgttg ctaagtccat gaactacacc tgtttaaact ctgagaaaga
3501 attcgagaag gccatctgtg acatgaagat ggctgttaat gctggggaca
3551 tttgctgctc actagatcac tcaaagtggg ggcccttcat gagcccagcc
3601 ctctttcttt ctttcattaa tgaattaaaa ttgaaggatc atgaaacaag
3651 tgctctgatt gattgcagac cagttctaag tgttttgagg tggcatttgc
3701 acaaagctgt tgaggtgcca ttcaatgtgg cagaggcgta ttgcaccggg
3751 atgctgaaga ggagattagg tttgatgagc ctacaatctc aatcagtgtc
3801 tgaggaattt ttccatcaac agttattaat ggggaaggaa gtgccaagtc
3851 atattatgtc tgtgttagac atggggcagg gaatacttca caacctctct
3901 gatctttatg gactgatcac agaacagttt ttgaattatt gtttagattt
3951 gctttttgat gtggtgccca tttcttacac atcaagtgat gatcaaataa
4001 caatgataaa attcccaact acaaatgcac ctgagggggg ggagagtcaa
4051 tctgattggt tagaagttct ttgttttcat gacttcttgt cctccaagct
4101 aaacaaattt gtaagtccca agagtgtttg tgggagtttt gctgcagagt
4151 ttaagtcaag gttttttgtt atgggtgaag aaaccccctt actcacaaaa
4201 tttgtctcag cagcactcca caatgttaag tgcaaaacac ctactcagct
4251 tgccgagaca attgatacaa tttgtgatca gtgtgttgct aatggtgtag
4301 gggtcaccat tgttggtgag atatcaaaga gggttaatag gttaataaaa
4351 tactctggtt atccacagac tcccttttta gctgtggaag tccaggatgt
4401 gaaagattgg gtggatggtt caagaggtta tagattgcaa cgaaatgtgg
4451 agaactgtct atctgatcat cctcagttag agcttataag gaaaagtgcc
4501 aaaaaggttt taacaaagat caaaaggggg ctcatatttg aagagcattt
4551 agttcagctg ataggaaaag gtggtgacaa tgcaatggaa gctttcctct
4601 cttacataga ctgttcggaa atagaaaaaa gggaggcttt gcgttatcgt
4651 tggttgaatc tgtcttccaa tggagatcta agacttgtct taagaaccaa
4701 gttaatgtca gcaagaaggg tactggaaaa agaacaaata ccaactttaa
4751 ttaagacatt acaatcaaag ctttcaaaga atttctcaag aggtgcaaaa
4801 aagatattag ctgaatctat aaacaagtca gcctttcaat cgtctgtagc
4851 ttctgggttc ataggctttt gtaagagtat ggggagcaag tgtgtcagag
4901 atgggagtgg tgggttttta tacatcaaag atgtgatcag taaggtgaaa
4951 atttgttcat gtgacatatg ttctttggct ccaggcattg ttttctgtga
5001 tgaagcacta gagaatgtct caatgttctc aagaccaata ctttgggatt
5051 atttttcttt ggttttgacg aatgcttgtg aacttggtga gtgggtcttt
5101 tcttgtgttc aaataccacc taaaccaact ctattaagca atcccaatct
5151 tttttgggca gtgaagccaa gaggtgtgcg tctggttgaa gatcagttag
5201 gattaaacca tgttctacaa tctgtaaaga gaaattaccc taaaatattt
5251 gaggagcatt tggtaccgtt catgagtgat ttgcaggtga gtcgaactac
5301 tgatttcaca aaattaaaat acctagatgt ttgcatagct cttgatatga
5351 tgaacgagaa tcttggtata atttctcatt tattgaaagg gagagacaat
5401 tcattgtaca tagtgaaaca aaatgagtgt gcatctgcgc atgtaaggca
5451 agttgaatat gttgactatg atgtaggttt gagtcctcaa cagatctgtt
5501 caaattttaa aattcagttg accttttctt cttttatcaa cccacttgtg
5551 atgacaactt caacattaag atcctttttt tggtttgggg aggttcttag
5601 gttggaagat gagaaccaaa tagatgttgg tgagttgaca gactttgttt
5651 tattgattaa gaagtacaat gtggatagag cgatgatgtt agatgatcta
5701 acaatggggt ttgttgtctc agaaattggt gagccaaaat tccgtttgtt
5751 agattttgaa tggtctggtg tcgaggaaca aacttctttt ccactatctg
5801 aaaactcaaa caacaacgaa ataaaattta cattgaattt gcagctggaa
5851 cacaaaaggc tttcaacaaa atatcgtctg actaggcttg ttgtgtattc
5901 ctacacaatg gtctgcgtaa tgttagttaa tgattccaga ggtgttttga
5951 aagttgaaaa cttgacgctg agggcctctg gtgatgtgaa agagcatcgg
6001 tttcttgatg gggtaacgct tgtctctcat catccaaccc tatgtgggaa
6051 aagggggata aacattctgg acttatttag ggatgctgag ttgcccatac
6101 ctgaaacaag aatgtttcct gaagaagtgt ttttggatct cagtgattat
6151 caatcagaag ttgaagacaa gtatgcatat gaaatcgtgg gtcccgaatt
6201 ttctgatgtg ccattggtta tgagtggagg atgtcttgtt gtaggggata
6251 aaaaactgtc acacctgttg actgagctga caggaaacgt cattttgaag
6301 gcattgggtg ccctggagac agatggagag attggaagtt ttttgatggg
6351 attgtggccc tacataaagg ccacaaaaca aagggtgaaa atatctcaag
6401 aagaatttct ttttatatat gagacacata gacgttcact tcttatgtct
6451 tttgaagcat ataatgactg gttagaattt ttagatttta gtgtgtgttt
6501 cagcaagacc ttaggtgatc tggttgtgtc ggacagttct ggcaatatga
6551 ggttaagagg agttgtttgt agacctctgc gtcaagtcgg cacagtgatg
6601 gagatagagt agaccagaca ggatcaacgc cccccggggt tccccggtgg
6651 gggccccttg cggggccccc ggggtttttg ccggtgtggt ttgtctgctg
6701 cctcattccg gtggtgcgct gggctcgact ggaatcgcta tgcgagtggg
6751 tagaggtttc cagcagatgt tgcacagatc agaggttctg agcatcaagt
6801 tcaagcatct cagacagaga tagtgatctg agcacaccac aaggttttta
6851 tcagcaaacc aacaacattt gcagttgtat ctaccgtgga ggctgactgg
6901 aggagttctg agaagttctg tctcagttga agttgttttg ggtcttgttg
6951 actggggttg ggtttcttgc ttgacattac aattgcccat gtcggaactg
7001 taacagagca ataagcgtga aagttacgcc taggatcccc ggtgcg