Sequence of DPV Cupixi virus
Cupixi virus strain BeAn 119303 segment L, complete sequence.
ACC No: AY216519
Dated: 2008-01-10 | Length: 7106 | CRC: -884091913
ID AY216519; SV 2; linear; genomic RNA; STD; VRL; 7106 BP.
XX
AC AY216519;
XX
DT 05-JAN-2004 (Rel. 78, Created)
DT 10-JAN-2008 (Rel. 94, Last updated, Version 2)
XX
DE Cupixi virus strain BeAn 119303 segment L, complete sequence.
XX
KW .
XX
OS Cupixi virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7106
RX DOI; 10.1016/j.virol.2003.08.016.
RX PUBMED; 14698659.
RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT "New insights into the evolutionary relationships between arenaviruses
RT provided by comparative analysis of small and large segment sequences";
RL Virology 317(2):191-196(2003).
XX
RN [2]
RP 1-7106
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT "Complete sequence determination and analysis of the large RNA segment of
RT arenaviruses";
RL Unpublished.
XX
RN [3]
RP 1-7106
RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P.,
RA Feldmann H., de Lamballerie X.;
RT ;
RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
RN [4]
RC Sequence update by submitter
RP 1-7106
RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.;
RT ;
RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la
RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005,
RL France
XX
CC On Jan 9, 2008 this sequence version replaced gi:37787731.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7106
FT /organism="Cupixi virus"
FT /segment="L"
FT /strain="BeAn 119303"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /db_xref="taxon:208899"
FT CDS 31. .6657
FT /codon_start=1
FT /product="L protein"
FT /note="polymerase"
FT /db_xref="GOA:Q6XQH2"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR014386"
FT /db_xref="UniProtKB/TrEMBL:Q6XQH2"
FT /protein_id="AAP44555.2"
FT /translation="MDEKISSLKDFVRKQIPDRPEFFYQKEALLSQVEVSLILTEGFKL
FT MSCLVEVESCEKNSCVHNSEQKFVDTILAENGIVGPTLPKVMPDGYRYFNKTLLLLEVF
FT VRVRPDEFEKKWKSDMGKLLSLKDDLLRCGISLVPIVDGRCSYNTSIIPEWATERFRWL
FT LIELLKESKEAMDFEIEDQEYQRLIHSLSRTCNQSLGFENIEQLKKVHLNYEDRLNEVI
FT LAGLNSDLKESVIREELIKLKAWYKKEVFEKGHGNFVRTNQTSLLKTLQEIGSHAGTTV
FT PECPMCCSKVFDLCYQMMLKIEGKESLNSSVSSDNNNPQISLVGREYLYVLSVCNKIKG
FT KKIFNTRRNTLLFLDLIILNFVTEVFKKVPLGIQSLKVEGLIIGQMLLLTNDRALDILS
FT ARRLLIKKIECNESWVKKCGDTLRRVEPSFWTSVCNYVKLPDFESLLLLAEVLCSDAPL
FT LRYEPVQVEESHCTHKDFQLLNINQQDCLFECLSHISLSLINSMKTSFSSRLLINEKDY
FT KRYFGTVRLKECYVQRFLFTEGKCGFLFYQKTGERSRCFSIYLSENGQLTELGSFYADP
FT KRYFLPIFSGCVLRSMCSEMITWLDFDEELMHVVKPQLRSLVLSILCSPTKRAQNFLQG
FT LRYFIMAFVNQAHHKQLMSKLIVECKSASDVLIQRLATKVFYTILTFGEDPGIHMTRKF
FT KFLLNVSYLCHLITKETPDRLTDQIKCFEKFLEPKLEFGSVVVNPSLNGILDPKQEDNM
FT LNGLEKLFSKSLYDVEDLKRPGISKDVLNYCLSLFTRGKLKVTGVLKTDPFKPSFTSTA
FT LDLSSNKSVVVPKLDELGNIVSVYDKQKLISSCVASMAERFRTKGRFNLDPDTIDFLIM
FT KNLTNLLSISGESPKASEELSLLYENLPEEITQVYDEIKNDIQVTLGKIGAKGSYKQKN
FT GKEGKAGSPSNAETLESIWAPFGVLREIKIETSTHEIKDFDPGLLSMDIYEKLCTTVFE
FT SSLKSSFFIDEVLSICPLELLLKNLTTKSFKENDFFECFKYILIQAGYDQRLGTYEHRS
FT RARFGFREEVVRLRDDVRVSDRESNSEAIAKRLDRSFFTSAALRNLCFYSEESPTEYTC
FT VSSNTGNMKFGLSYKEQVGSNRELYVGDLNTKMMTRLVEDFAEAVCNSMHYTCLNSESE
FT FDRAICDMKMAVNNGDLCLSMDHSKWGPFMSPALFHRFLSGAKLKTMRLGDSVDTKPVL
FT NVLKWHIHKVVEVPYNVAEAYCTGMLKRRLGLMSLQTQSISEAFFHQEIQTKKEVPSHI
FT MSVLDMGQGILHNLSDLYGLISEQFLNYCLDFLYDAIPTSYTSSDDQITMIRMPQQSME
FT TAEEGNADWLELLCFHDFLSSKLNKFVSPKTVCGTFAAEFKSRFFVMGEETPLLTKFVS
FT AALHNVKCKTPSQLAETIDTICDQCVANGVGVSIVSEISKRVNRLIKYSGYPLNPFLAV
FT ENQDVKDWVDGSRGYRLQRNIESCSIQESVLKQVRKFAKDVFLKIKRGQVFEEHLIQLI
FT GADGDSAMEGFLSYVDCDKDKLREILEHRWLNLSANGDLRLVLRTKLMSSKRVLEKEQI
FT PTLVKTLQSKLSKSFTKGAKKILAESINKSAFQASVASGFIGFCESVGSKCVRDGSGGF
FT LYIREVVSKIISCQCTLCSANPGIIFCKNALSNVSNFSRPILWDYFSLVLTNACELGEW
FT VFSPTKRPQQPNLLQNPNLFWAVKPKSVRLIEDQLGLGHVLQSIRRSYPKIFEEHLIPF
FT MSDLQVNRTIDFTRLKYLDVCVAIDMMNENLGIVSHLLKRKDNSVYIVKQNECSVAHVR
FT EVQYVDHDIGLSPQQVCTNFKLQLVLSSMISPLVISTSVLKSFFWYNEVLKLEDNSLID
FT IGELTDFVILNKSYGVERVMYLEDMAMGYVVSSVDEPEIHLINAWVLTEHDVKKLESGS
FT KVGDKDGKALAITLNIQFRHRRHSTKYHFTKGVVYSFTVEFQVPPSLQGPNLNTVPVRE
FT MVLNASGMLGDHQSLDGVPLVASHPLMTGKKPIDLLTLLSESDIQISDDTGQLMAVYLD
FT FSEFQSLIEDKYSFKIVGPERLDTPIILKGGVYMSEGKRLSTLMVELSGNVIVKALGAI
FT ETDKEVGSLLLGLWPYIKTTGQKIKMDQNDFLLLYESHRELLLKSLEGLGGWLDFLDFS
FT VCFSKSLSDLVISDNTGSLRLKGVTCRPIHNPRIVEDID"
FT CDS complement(6748. .7038)
FT /codon_start=1
FT /product="Z protein"
FT /db_xref="GOA:B0BLK9"
FT /db_xref="InterPro:IPR003224"
FT /db_xref="UniProtKB/TrEMBL:B0BLK9"
FT /protein_id="ABY59842.1"
FT /translation="MGNCRSKQESHPICPNTQTPEPTEAEFRRAAVNSLYGRYNCKCCW
FT FADRNLINCSDHYLCLRCLNVMLRTSNLCNICWKPLPTRISVPTEPTAPSE"
XX
SQ Sequence 7106 BP; 2158 A; 1268 C; 1652 G; 2028 T; 0 other;
ay216519 Length: 7106 10-JAN-2008 Type: N Check: 72 ..
1 cgcaccgggg atcctaggcg acacgtgata atggatgaaa agatctcctc
51 tttgaaagat tttgttagaa aacagatacc tgatagacca gagttcttct
101 atcagaaaga agcactttta tctcaagtgg aggtcagcct catactcact
151 gagggtttca aactgatgtc atgcctggtt gaggtggaat cttgtgagaa
201 aaattcctgt gtgcacaaca gcgaacagaa gtttgttgac accattttgg
251 cagagaatgg tatagtaggt ccaacactgc caaaagtaat gccagatggt
301 tacaggtatt ttaacaaaac tttgcttttg ttggaggtct ttgttagagt
351 gaggcctgac gaattcgaga agaagtggaa gtctgatatg ggaaagctgc
401 taagcttaaa ggatgatctg cttaggtgtg gaatttcact tgtgccaatt
451 gttgacggca ggtgcagcta caacactagt ataattccgg agtgggcaac
501 agagcggttc aggtggttac ttattgagct tctgaaagag tccaaagaag
551 ccatggattt tgaaattgaa gaccaagaat atcagagact aatccacagt
601 ctgtccagaa catgcaatca aagtctggga tttgaaaata tcgaacagtt
651 aaaaaaggtt catctcaatt atgaagatag actcaatgaa gtcatacttg
701 caggtctcaa ctcagatctt aaagaatctg tgataagaga agaactaatt
751 aaactgaaag cctggtataa aaaagaggtg tttgaaaagg gacatgggaa
801 ctttgtgaga actaatcaga cttctttatt aaagactcta caggagatag
851 gatcacatgc tggcacaact gtgcctgaat gccctatgtg ttgtagtaaa
901 gtttttgatt tatgctatca aatgatgctg aagattgaag gaaaggagtc
951 tctaaatagt agtgtgtctt cagacaacaa caatcctcag atttctttgg
1001 ttgggaggga atatttatat gttctctcag tctgcaacaa gatcaaaggg
1051 aagaaaattt tcaacacgag aagaaatact ttactattct tagacttaat
1101 tatacttaat tttgtcaccg aagttttcaa aaaagtgccg ttggggatac
1151 aatctttgaa ggttgaagga ttgataattg gccaaatgtt gttgttaacc
1201 aatgataggg cacttgacat cctctcagct agaagattgc tcataaagaa
1251 aattgaatgt aatgaaagtt gggttaaaaa atgcggagac actctgagaa
1301 gagtggagcc ctctttttgg accagtgtgt gcaattatgt aaaattgcca
1351 gattttgaat ccctacttct attggcggag gttctatgct cagatgcacc
1401 tttactgagg tatgagcctg tgcaagtgga agaaagccat tgcacacaca
1451 aggactttca gttgctaaac attaatcaac aggactgtct ttttgaatgc
1501 ctatcacata tatctctctc attaatcaac tcaatgaaga cttccttctc
1551 atcaagactt ctaattaacg aaaaagatta caaaagatat tttggaaccg
1601 taaggctaaa agaatgttat gtgcaaagat tcctattcac agaggggaag
1651 tgtggtttcc tgttctatca gaaaaccgga gaaaggtcaa ggtgcttttc
1701 aatttattta tctgaaaacg gacagctcac agagttaggc tcattctatg
1751 ctgaccccaa gaggtatttt ctaccaatat tttctgggtg tgtgttacga
1801 tctatgtgtt cagagatgat cacatggtta gattttgatg aggaactaat
1851 gcatgttgtc aaacctcagc taaggtcctt ggtactaagt attctctgtt
1901 cacccacaaa aagggctcag aattttttgc agggtcttag atattttatc
1951 atggcatttg tgaaccaagc tcatcataag caattgatgt ctaaattaat
2001 tgtagaatgt aaatcagctt ctgatgtctt gatccagagg ttagctacca
2051 aagtctttta tacaatattg accttcgggg aggatcctgg gatccacatg
2101 acaaggaagt tcaaatttct tttgaatgtc agttatttat gccatttgat
2151 tacaaaagaa acccctgaca gactcactga tcaaataaaa tgttttgaga
2201 agtttttgga accgaagtta gagtttggca gtgttgttgt caacccgtca
2251 ctcaatggaa tcctggatcc aaaacaagaa gataacatgc tcaatgggtt
2301 ggaaaaactt ttctccaaaa gtctctatga tgttgaagac ctgaagaggc
2351 caggtatatc caaagatgtc ctaaattatt gtttatcgct tttcacccga
2401 ggcaaactga aagtgacagg tgtcttaaag acagatccat tcaagcccag
2451 tttcacaagt acagcgttgg acttatcaag caacaaaagt gttgttgtcc
2501 caaaattaga cgaattgggc aacattgtgt ctgtttatga caagcaaaaa
2551 ctcatttcct cctgtgtagc ctccatggca gaaaggttca gaactaaagg
2601 aaggttcaat ttggaccctg acacaattga cttcctaatt atgaagaact
2651 taaccaactt gctctcaatt agtggtgaga gtccaaaggc atcagaagaa
2701 ctttcattgc tttatgagaa cctacctgaa gaaatcaccc aagtctatga
2751 tgaaatcaag aatgacattc aggtaacctt ggggaaaatc ggagctaagg
2801 ggagctacaa acaaaagaat gggaaagagg gaaaagctgg atcccccagc
2851 aatgctgaga ctcttgagtc aatttgggca ccttttggag tgcttagaga
2901 gatcaagatt gaaacatcaa cccatgaaat caaggacttt gatcctggtc
2951 tgctgtccat ggatatttat gaaaagctgt gtacaacagt ttttgagtct
3001 tccttaaaat ccagtttttt tatagatgag gtcttaagta tatgcccact
3051 cgaattatta ttaaagaacc tgactacaaa gtcattcaag gaaaacgact
3101 tttttgagtg cttcaaatac attttaatac aagcaggtta tgaccagagg
3151 ctgggtacct atgagcacag aagtagggcc agatttggat ttagagaaga
3201 ggtggtaagg ttgagagatg atgttagggt gagtgataga gaaagcaatt
3251 ctgaagccat tgccaagcga cttgatagaa gtttttttac aagtgctgct
3301 ttgagaaatc tttgctttta ttcagaagaa tcacctactg agtatacatg
3351 tgtgagttct aatacaggca acatgaaatt tgggctcagt tataaagagc
3401 aggtagggtc taacagagaa ctgtatgttg gtgatttgaa tacaaaaatg
3451 atgactaggc tagttgagga ttttgctgag gctgtgtgca attctatgca
3501 ttacacgtgt ctcaattcag agtcagaatt tgatagggca atatgtgaca
3551 tgaagatggc agtgaacaat ggtgacctat gcctctcaat ggatcattca
3601 aaatgggggc ctttcatgag ccccgcactt ttccacagat ttttaagtgg
3651 ggccaaactg aaaaccatga gacttgggga cagtgtggat actaagcctg
3701 tattgaatgt tttgaaatgg cacatccata aggttgttga agtgccttac
3751 aatgtagctg aagcttactg cactgggatg ttgaaaagaa gattgggttt
3801 aatgagtctc caaactcaaa gtattagtga ggcattcttt catcaagaaa
3851 tccagacaaa aaaagaagtt cccagtcaca taatgtcagt actagatatg
3901 ggacaaggga tactccataa tttatctgac ttatatggct tgattagtga
3951 acagttcttg aattactgtt tagacttcct ctatgatgct atcccaacat
4001 cctacacctc aagtgatgat caaataacaa tgataaggat gcctcagcaa
4051 tctatggaga ctgcagaaga aggaaacgca gattggctgg agttgttatg
4101 tttccatgat ttcctatcat ctaaactcaa taagtttgta agccccaaga
4151 ctgtgtgtgg aacttttgct gctgagttta aatccaggtt ctttgtaatg
4201 ggtgaagaaa caccactttt gacaaagttt gtgtctgcag cacttcataa
4251 tgtgaagtgt aaaacccctt cccagctagc tgaaaccatt gacacaattt
4301 gtgatcaatg tgttgcaaat ggggttgggg tgagtattgt gtctgagatc
4351 tcaaaaagag tcaaccgtct gattaagtat tccgggtacc ccttgaaccc
4401 ctttctcgct gtggaaaacc aggatgtgaa ggattgggtg gatggatcta
4451 gagggtaccg tttgcaaagg aacattgaga gctgttccat tcaggaatca
4501 gtactcaaac aggtgagaaa attcgcaaag gatgtgttcc tgaaaataaa
4551 aagaggacag gtttttgagg aacacctaat acagttaatt ggtgctgatg
4601 gtgacagtgc catggagggt ttcttatctt atgttgactg tgacaaggac
4651 aaacttagag agatactcga gcaccgttgg ttgaatctct cagccaatgg
4701 agatttgaga ctcgttttga gaacaaagtt gatgtctagc aaaagagtat
4751 tagaaaaaga acaaatccca acattggtga aaacacttca atcaaagctt
4801 tccaaaagct ttacgaaggg tgctaaaaag atattggctg aatcaataaa
4851 caaatcagcc ttccaggcat cagtcgcttc aggattcatt gggttctgtg
4901 agagtgtcgg aagcaagtgt gttagagatg gcagtggagg attcttatac
4951 attagagagg tggtgagtaa aataattagc tgccagtgca ccttatgttc
5001 agcaaaccca ggaatcatct tttgcaaaaa tgcattgtct aatgtgtcca
5051 atttttcaag accaatcttg tgggattact tctctcttgt tttaacaaat
5101 gcttgtgaac taggggagtg ggtgttttct cctaccaaaa ggcctcaaca
5151 gccaaattta ctacaaaacc ctaacctctt ttgggctgtg aaacccaaga
5201 gtgtccgcct tatagaagat cagttaggct taggacatgt attgcagtcg
5251 ataaggagaa gttatcccaa aatttttgaa gaacacctga ttccgtttat
5301 gagtgaccta caggtgaata ggacaattga ttttactaga ttgaagtatc
5351 tggatgtatg tgtggctatc gacatgatga atgaaaattt ggggattgtg
5401 tcacacctgc tgaaaagaaa agataattca gtttatattg tcaaacagaa
5451 tgagtgttcc gttgcacatg tgagagaggt gcaatatgtt gaccatgaca
5501 ttggcctaag ccctcaacag gtttgcacta attttaagct ccagttagtg
5551 ttatcctcta tgataagtcc ccttgtaata agcacctcag ttctaaaaag
5601 cttcttttgg tataatgaag ttctaaagtt agaggataac agtttgattg
5651 acattggtga actcacagac tttgttatct tgaacaaaag ctatggtgtg
5701 gagagggtca tgtatctgga agacatggca atgggatatg ttgtctctag
5751 tgttgatgag cctgagattc acttgattaa tgcttgggtc ctcactgaac
5801 atgatgtcaa aaagctagaa tcaggctcca aggtagggga caaagatggc
5851 aaggcactgg ccatcactct caacattcag tttagacata ggaggcactc
5901 aacaaagtat cattttacca aaggtgttgt atattcattc acagtggagt
5951 tccaggttcc tccctcactt cagggtccaa atctgaacac tgtgcctgtg
6001 agggagatgg tgttgaacgc atcagggatg ttgggggacc accagtctct
6051 ggatggggtt cctctggttg cgtctcaccc tcttatgacc gggaaaaaac
6101 ctattgattt gctaacctta ttgtcagaga gtgatattca aatctctgac
6151 gacacaggtc aactgatggc tgtgtacttg gatttcagtg aatttcaatc
6201 actgattgag gacaagtatt cttttaaaat tgtggggcct gagagattgg
6251 acactccaat tatactaaag ggaggggttt atatgtctga aggtaagagg
6301 ctatcaacct taatggttga actttcaggt aatgtgattg tcaaagcatt
6351 gggtgctata gaaacagaca aagaggttgg gagtctgctg ctcggcctat
6401 ggccctacat caaaaccact ggtcagaaga tcaaaatgga tcaaaatgac
6451 tttctgcttt tgtatgagtc acatagggaa cttcttctta aatcacttga
6501 gggattgggt gggtggctag atttcttgga tttcagtgtg tgtttcagca
6551 agagtctctc agatctggtt atatctgaca acactggcag tctgagactg
6601 aagggtgtca cttgcagacc catccacaac ccgaggattg tggaggacat
6651 cgactaacat gacagccgcc accgacggag gcccggggga cccacgggga
6701 cccccccgga ccgggggggc cccgggccgc tggcgctgtg gcggaactta
6751 ttcggaggga gcggttggct ccgttggcac cgagatgcga gttggtaggg
6801 gcttccagca gatgttgcag agattggaag tccttagcat cacatttaag
6851 cacctcaagc agagataatg gtcagagcaa ttgataagat ttctatctgc
6901 aaaccaacag catttacagt tgtatctacc gtagagactg ttcaccgcag
6951 ctcttctaaa ttcagcttca gttggctcag gagtctgggt gttagggcag
7001 attggatgtg attcttgctt tgacctacag ttgcccatgt tggcggtcta
7051 tgataaaaga ggtggaatag tatgtagtgc tagttacgcc taggatcccc
7101 ggtgcg