Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus, complete genome.
ACC No: AY236971
Dated: 2005-04-16 | Length: 5899 | CRC: -530866936
!!NA_SEQUENCE 1.0
ID AY236971 standard; genomic RNA; VRL; 5899 BP.
XX
AC AY236971;
XX
SV AY236971.1
XX
DT 01-MAY-2003 (Rel. 75, Created)
DT 16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Sugarcane yellow leaf virus, complete genome.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5899
RA Gaur R.K., Rao G.P., Singh M.;
RT "Molecular characterization of sugarcane yellow leaf luteovirus of
RT sugarcane of Indian isolate";
RL Unpublished.
XX
RN [2]
RP 1-5899
RA Gaur R.K., Rao G.P., Singh M.;
RT ;
RL Submitted (14-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Sugarcane Research Station, Kunraghat, Gorakhpur, UP
RL 273008, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .5899
FT /country="India"
FT /db_xref="taxon:94290"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Sugarcane yellow leaf virus"
FT 5'UTR 1. .66
FT misc_feature 67. .837
FT /note="nonfunctional ORF0 protein due to mutation"
FT CDS 243. .2195
FT /codon_start=1
FT /db_xref="GOA:Q80FH9"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="UniProt/TrEMBL:Q80FH9"
FT /note="ORF1"
FT /product="multifunctional protein"
FT /protein_id="AAP21786.1"
FT /translation="MAPTLPFTTGWSTFALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGMYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMLYRTVTYIHRRLFASRGDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTQFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA
FT EEEDDFVVEAKSPPPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTP
FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR
FT KTSNTSSKPHTNGKSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP
FT VSGGPPSAPKPKRQV"
FT CDS <1736. .3454
FT /codon_start=1
FT /db_xref="GOA:Q80FH8"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q80FH8"
FT /note="ORF2; produced by predicted -1 translational
FT frameshift of ORF1"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAP21787.1"
FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD
FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC
FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR
FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFNEAVNSLELDA
FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP
FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG
FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNX
FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA
FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN
FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK"
FT CDS 3649. .5679
FT /codon_start=1
FT /db_xref="GOA:Q80FH7"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProt/TrEMBL:Q80FH7"
FT /note="ORF5; produced by translational readthrough of TAG
FT stop codon of ORF3"
FT /transl_except=(pos:4237. .4239,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /protein_id="AAP21790.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV
FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR
FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPE
FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE
FT SPIYAPPPPPSLVPTHADTLRQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLS
FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPE
FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG"
FT CDS 3649. .4239
FT /codon_start=1
FT /db_xref="GOA:Q9QQN7"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProt/TrEMBL:Q9QQN7"
FT /note="ORF3"
FT /product="capsid protein"
FT /protein_id="AAP21788.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 3680. .4132
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProt/TrEMBL:Q9WI47"
FT /note="ORF4"
FT /product="putative movement protein p17"
FT /protein_id="AAP21789.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
FT 3'UTR 5680. .5899
XX
SQ Sequence 5899 BP; 1575 A; 1539 C; 1416 G; 1360 T; 9 other;
AY236971 Length: 5899 April 19, 2005 08:53 Type: N Check: 593 ..
1 acaaaatata tcgggaggga aacccctgat atatttggac caagcctctg
51 acttgtaaac tgctctatgc ttttcaacga attctctgtt gagggaatta
101 taattcagag cacacgaaag cacttcaccc gtctttcgtg gggaggtttc
151 caggtgtttg acctactaca gagtcttcgc ctgcaagtgg gttgagttga
201 cctatcaaga tccactcaca cgccatttag tacaaaatta ctatggcccc
251 aacactcccg tttacaactg gctggagcac attcgcctta ttgttgtcac
301 tatggtgcct attctgctcc tgccagacac aaccattgga cggcacatcc
351 atattaagag acagtacctc cagtctgtcc ttttatggct tgcccgcaac
401 aaactctact atagagttaa gagatgccgt tccaagcggt atgtactcga
451 gcaagatcac atcggccccg aacttttccg aactcagcta ctccagtatg
501 ctgggttgga tgtttttcaa gatgtggcgc gattgcaaga ctttctcgag
551 agaggctacg acactttccg atcggttctt ggagtacacc ttctcgaaca
601 cgaaaggttt gttagtcgaa ttcttgaaca acctgttatg gaacctgatc
651 aagctgtacg tttatgcttt cactatcata acgcgcttga tcatgacgat
701 gacgattctg gcctggaaac cgattttgat aatctgtctc ttggtcgtcc
751 ttacatcaat ggtctaccac ctaatgagaa aattattttc attcattcaa
801 atttggtggg tcgtagcacc tattctcatg ttatatagga ccgtcacgta
851 cattcacaga aggttgttcg cttcacgtgg ggacgagaaa atggtccaag
901 gtttcaaaag ctttgccgtc cccatgtcac caccaggaca ctcagtgctt
951 gagatagtac accccgatga ttctcacatg ggatatgcat cctgtgttcg
1001 attgaaaaac ggggaagagg ctctcatgac atccgttcac tgcataagcg
1051 attctttcaa ggttcgctcg ttcaggaatg gtatcaagat ccctctaacg
1101 caattccaag tgctgttgcc cgccaatgcg atggacattg ttcttcttcg
1151 aggcccacct gagtggaagt ccatccttgg agccaaagca gcccacttca
1201 ctccagtcaa ccagctcaac aaaggggctg tgtctttctt cattttcgac
1251 aaggagtgga tgatgcacaa cgcaaaagtt acaggaactg atggttttta
1301 tgccacagtt cttagtaaca ctgagaaggg ctacagtggc gccccctact
1351 ggaatgggaa atctatagta ggggtgcata aagggcacgt gtacggagac
1401 gattccaaga attacaatct tatgtcgccg attccccctg tcaaggggtt
1451 aacggcgcct aattttgtgt atgagtctcc gtctctgcaa ggagatgtct
1501 ttagcgacgc cgacgtttca gacattgctg attacgccga ggaggtgtat
1551 gagaaaaccc ttgcagagcc taaagtgtgg aaacctgcca gcggcaaata
1601 ctggtgggaa atggctgaag aagaggatga ttttgtcgtt gaggcaaagt
1651 cacctccccc tgataaacct gttgagaacg ctacagcaaa agagcagact
1701 ccagcttcga ctgtcgagaa agctatggtt gctgatcagc cgactccaga
1751 ccagggaaac gagccaagtg gcgccgacca cttaaaaaca ccggaatcca
1801 ccccgctcaa gcaagacgaa tctacaaaag agttgctcaa caacatcgtc
1851 tcgcagttga ttcaaaagat cgacctgagc tccattgcaa cgagggtgga
1901 ggagaaactg ctgcgtcagg cccagaacaa acagcagcag aacggaggga
1951 agaagtcgcc cagaaaacgc aagacctcga acacttcttc caagccgcat
2001 acaaatggga agagtccacc agtgacatcc cagggttcag gaaatgcggc
2051 aaactccccg cgctatacca tcccccaaaa ccgaagagca cacaatgggg
2101 agagcgcatc atctcagagc acccagaaat ggcgtccaaa gtcgccggtt
2151 tcgggtggcc ctccttcggc gcccaagccg aagagacaag tctgagactc
2201 caagcggcac gctggcttaa acgagctgag tcagcggara agccgacaga
2251 aaaacaacgc aagctcgtca ttgatcgtgt ggtyaaggca tatgaaccgt
2301 gtagaacyaa tgccccacac accagctcct ctggcagcct catctggtcc
2351 gacttcttga aagatttcaa cgaggctgtc aactcactag aactcgacgc
2401 aggaataggt ctcccataca aacttcttca caaagacacc catcgtcaga
2451 tggttgaaga ccccaaattc ctgccgctcc tgacgcgatt gacctggaac
2501 cgtttacaga agatgtccca ggttgatttc caggagatga ctcctgaaca
2551 actagtgagg gaaggattgt gcgatccgat tcgtttgttc gtcaaaggag
2601 aaccgcacaa gcaggcgaag cttgatgaag ggcgctaccg cctcatcatg
2651 tcagtctcgc tggtagatca actggtagcc cgggttttgt ttcaagcaca
2701 aaacaaaaga gagatagctt tgtggagagc tatcccttca aagcccggtt
2751 tyggcttatc cacagacagg gaagcacgcg aattcatyga atccctgtcc
2801 aagacagtag ggtgttcccc agcagaagtc attcatggct ggagggacaa
2851 gatcgtaccc accgactgtt ccggttttga ctggtcagtc gccgactgga
2901 tgctcgaaga cgacatggaa gtgagaaaty ttctcacwat caayaacaac
2951 gagctaaccc gccgcctcag ggcgtgctgg ttgaagtgca tcacaaactc
3001 tgtgatttgc acrtccggcg gtgtcttgta cgcccaaact catcctggag
3051 tgcaaaaatc tggatcttac aacacgagtt catccaattc caggattcga
3101 gtaatggccg cttttcattg cggcgcagat tgggcgatag ccatgggaga
3151 cgatgcactt gagtctccaa actccaacat caacgcgtat caaaagttgg
3201 ggtttaaagt cgaggttgcc tcacagctag aattttgctc acacgtcttt
3251 gagcaggagg acctcgccag gccgttgaac gtaaacaaaa tgctttatcg
3301 tttgatcttt ggatacaatc cggcctgtgg caacgcggag gtattgtgca
3351 attacctcca agctgtggct tctgttctca acgagcttcg ccatgatcca
3401 cagctagttg ctaccctcca tgagtggctg gtccctggcg ccgccacaaa
3451 ataaatacgg tggggcatcc cgagccacca tataggttgc aagagtggaa
3501 cgggaagtcc tatagataag ccgcgcgatt ctggattaca aacttctagc
3551 gggagttctc atcggtgttc tcatcgcaat tcccctagtg atcatagcgg
3601 cttacctgat attcctcaaa atcagtgcac acatccgagc gatagtgaat
3651 gaatacgggc gctaaccgct cacgaaggaa tgtcagaaga cgcgctaacc
3701 gtcgtagaca gactcggcca gtggtcgtgg tccgggctcc cccaggacct
3751 agacgagtac gacgacgtag agcacgtgtt ggaggaaacg ctgtgcgagg
3801 accgggagga agaagcaacc gggatgttct cactttcacg gttgacgatc
3851 tcaaagccaa ctcaaccggg atcctcaaat tcggaccgaa cttatctcag
3901 tacgcagcgt tcaacaatgg cttactcaaa gcctaccatg agtataaaat
3951 cacaagtctc actattcagt ataactcatg ctcctccgac gcaactccag
4001 gtgcaatcgc acttgaagtg gatacatcct gctcccaaac aacaacaggc
4051 tccaagatta ctagcttccc cgtcaagagg aacgccaaga aagtcttccc
4101 ggcccccttc atcaggggga aagatttcat gactacgtca gctgaccagt
4151 tttggttgct gtacaaaggg aatggagact cgagcctagc aggacaattc
4201 gtctgccgat ttgaatgcct tttccagaat cccaaatagg taggcgacgc
4251 tcccccaaca cccaccccaa caccaacccc acccgctccg accccggcac
4301 cggctcccaa gtattttgga taccaaggag tgccgaacaa catcgtgaaa
4351 acaagaggaa actctgaata tctagatgtg ggtccgctcg aaaatgtgac
4401 catgtatctt tggaaagacg aatcgtggag cattgagcaa ctgtcagccg
4451 gatatcgcgt taacaatcga gaacgtgcca taccctttgt cctctttcca
4501 gtggataaag gtaaatactc cgtgtttata caatgtgagg gctttaaggc
4551 agttaaagcc aaaggaggca cgaacgacgg caagatgagc gggtttcttt
4601 gtgacaatgc aaatctcgcg ggttggcgag catacgcata tagtgggtgt
4651 acaatctcta attatagaac atcggactct aatgttcctg gtcatccgga
4701 catgaaagtc aatggtggat cttttaccga ccaattggtc gagagagatt
4751 tttcttgttc atttcacctt gaggtgcctc aacaaggcta ttttggctta
4801 gaggccccac ccattgaaaa gagtgatcat ttcaattttg tggtgtctta
4851 cgctaacttc actgataaaa tcctggaatg gggttcaatc tctgtagcga
4901 tagacgaggt gaatgacgga gcgtatagta gatcaaaatg ggataagact
4951 actgcaatga gtgctcgttt gccgactcag gtgagcgccc cctctgaggt
5001 ttacaccccg gaagcacctg aacaaccgac taacgaaggg acggagagta
5051 tgcctccagc cccgaacccg gcactgggac cggacaaccc agcaaccaaa
5101 gaacccacgc ccaaaatcgt ggataatccg gacccaaagg tactcaactg
5151 gcttaacaac cagcgagata aacctgtggt ggaagaggtt ttgcgtgaat
5201 ctccgattta tgctcctcca ccccccccgt ctctagtccc gactcatgcc
5251 gacactttaa gacaggcgga taaggtccgg agagctctca tggctaacgc
5301 ttcacgttca gcctcacctc cccccacgaa caccgaagtt cctgttcttg
5351 gagccactga caccgcttct cttagtggat cattacgcgg tggctccctc
5401 aggggtaatt tgggttctcg cccctctctt ccgagggtcg ctgacagccc
5451 tccccgttct gtaagtccgg ctcgttccga gaccagcact ttacagggcg
5501 gttccctgag cggtggttct ttgagaggtg gtaacctcca ggctttgcct
5551 gaggccacaa gagagcaaag gagggaatat gaacgtctca agaattcaca
5601 agggaagacg gtagcaaaag cccatgctaa agaacacggt tacaagccac
5651 cgaaatcttc ctcctccttg tttggttgag tgtcgagcca ctataacgct
5701 ccccgccccg ggacacggga ctccaatcat gagtttaaac tgagctcttt
5751 ccacgagcct aaactggaga actccgcaaa gttctaaaac tatgcagatg
5801 ggctagcgac ccagctcttc cattgatttt caggatcttt ggaagcccaa
5851 gctaaagggg tggaatacag ggaggcactg cctcccgtat atcctagta