Sequence of DPV Strawberry pallidosis-associated virus

Strawberry pallidosis associated virus CFRA 9064 coat protein gene, complete cds.

ACC No: AY262159

Dated: 2004-08-24 | Length: 747 | CRC: -1272635372

                !!NA_SEQUENCE 1.0
ID   AY262159   standard; genomic RNA; VRL; 747 BP.
XX
AC   AY262159;
XX
SV   AY262159.1
XX
DT   14-APR-2003 (Rel. 75, Created)
DT   24-AUG-2004 (Rel. 80, Last updated, Version 3)
XX
DE   Strawberry pallidosis associated virus CFRA 9064 coat protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Strawberry pallidosis associated virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
XX
RN   [1]
RP   1-747
RA   Tzanetakis I.E., Halgren A.B., Keller K.E., Hokanson S.C., Maas J.L.,
RA   McCarthy P.L., Martin R.R.;
RT   "Identification and detection of a virus associated with strawberry
RT   pallidosis disease";
RL   Plant Dis. 88:383-390(2004).
XX
RN   [2]
RP   1-747
RA   Tzanetakis I.E., Martin R.R.;
RT   ;
RL   Submitted (25-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, HCRL, 3420 NW Orchard Ave., Corvallis, OR 97330, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .747
FT                   /db_xref="taxon:227507"
FT                   /mol_type="genomic RNA"
FT                   /organism="Strawberry pallidosis associated virus"
FT                   /isolate="CFRA 9064"
FT                   /isolation_source="Fragaria vesca clone CFRA 9064 at the
FT                   National Clonal Germplasm Repository in Corvallis, Oregon,
FT                   USA"
FT   CDS             1. .747
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q76Z99"
FT                   /product="coat protein"
FT                   /protein_id="AAO92343.1"
FT                   /translation="MAETTGDAPVINAETAPPRDQEVRNRSNEEFDEGFFSRAFNSVSK
FT                   RDDVANDSHSDPNTFSDIKVTADRGDTLNEEQNKKYEVKLKEYCQTITKVDVDEKTFLA
FT                   FYCSLIKMAKNQSTSIRNNNNPHLTNSFSVADKTFSYKTKDFLTFMAPHFTGVNNPLRR
FT                   YMRKNEGRIKTISAAAGIDSDGHLAAKHGTTSQFWGATSDFTNGCETNISDDDLAANYM
FT                   QREAATKNKARSRTIFNVSQLAGNVQ"
XX
SQ   Sequence 747 BP; 269 A; 134 C; 161 G; 183 T; 0 other;

AY262159  Length: 747  October 20, 2004 10:51  Type: N  Check: 6586  ..

       1  atggctgaaa caaccggcga tgctccagta attaatgcgg aaacagcgcc
      51  acctagagat caagaggtca gaaacagaag taatgaagaa tttgatgagg
     101  gatttttctc acgtgcgttc aactctgtat caaaaaggga tgacgtcgca
     151  aatgatagtc attcggaccc caatactttt tctgacataa aagtgaccgc
     201  tgacagggga gacacattaa atgaagaaca aaacaaaaaa tatgaggtaa
     251  agttaaaaga atattgtcaa accattacca aagtggatgt agatgagaag
     301  actttcttgg ccttttattg ctctttgata aaaatggcaa aaaatcaatc
     351  aacctcaata agaaataata acaatcctca cttgacaaat tccttttctg
     401  tggcggataa aaccttttct tataagacaa aagattttct gactttcatg
     451  gctcctcatt ttactggcgt gaataatccg ttgaggaggt atatgcggaa
     501  aaatgaaggt agaattaaaa cgatcagcgc ggcagcaggc atagatagtg
     551  atggacatct agcagcgaaa catgggacta cctctcaatt ctggggagcg
     601  acgagcgact ttaccaatgg ttgcgaaacc aatatctcag atgatgattt
     651  agctgcgaat tatatgcaaa gagaagctgc tacaaagaac aaagcaagaa
     701  gtagaacgat cttcaatgtc agtcaattgg cgggaaacgt tcaatga