Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus - [Potato] isolate Pot-Mer1-2002 segment DNA A, complete sequence.
ACC No: AY286316
Dated: 2006-11-16 | Length: 2740 | CRC: 90946724
ID AY286316; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
XX
AC AY286316;
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DT 21-MAY-2003 (Rel. 75, Created)
DT 16-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE Tomato leaf curl New Delhi virus - [Potato] isolate Pot-Mer1-2002 segment
DE DNA A, complete sequence.
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KW .
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OS Tomato leaf curl New Delhi virus - [Potato]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2740
RA Usharani K.S., Surendranath B., Garg I.D., Khurana S.M.P., Malathi V.G.;
RT "Complete nucleotide sequence of DNA A of potato apical leaf curl virus
RT from India";
RL Unpublished.
XX
RN [2]
RP 1-2740
RA Usharani K.S., Surendranath B., Garg I.D., Khurana S.M.P., Malathi V.G.;
RT ;
RL Submitted (28-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Pathology, Indian Agricultural Research Institute, PUSA
RL Campus, New Delhi, Delhi 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Tomato leaf curl New Delhi virus - [Potato]"
FT /segment="DNA A"
FT /isolate="Pot-Mer1-2002"
FT /mol_type="genomic DNA"
FT /country="India"
FT /note="transmitted by whitefly"
FT /db_xref="taxon:270145"
FT gene 120. .458
FT /gene="AV2"
FT CDS 120. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q7TLA4"
FT /protein_id="AAP37405.1"
FT /translation="MWDPLLHEFPESVHGVRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHLFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNIQNV"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1"
FT /note="coat protein"
FT /db_xref="GOA:Q7TLA3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q7TLA3"
FT /protein_id="AAP37406.1"
FT /translation="MVKRPADIIFSTPASKVRRRLNFDSPFGARAVVPIARVTKAKAWT
FT NRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(310. .795)
FT /gene="AC5"
FT CDS complement(310. .795)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:Q7TLA2"
FT /protein_id="AAP37407.1"
FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDTVSMVFC
FT LDVFIHPYLPQHIDRFHTKSLPYAMSESRTSGNITNTHDFANMRDIVPRFKGLHLTRTF
FT ASPWHVGTSIHSVYSGFSVHRPVGPGLCFCDAGNGDNCTSSKGAVEVETSAYFRCGR"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3"
FT /note="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="InterPro:IPR008973"
FT /db_xref="UniProtKB/TrEMBL:Q7TLA1"
FT /protein_id="AAP37408.1"
FT /translation="MITDSRTGESITADRAESGVYTWEIRNPLYFKILKHNSRPFLRQH
FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMVGVIGI
FT YNVIRAVYHVLDNVMEQTIDVCTSYDIKLDIY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /note="transcription activator protein"
FT /db_xref="GOA:Q7TLA0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="InterPro:IPR009072"
FT /db_xref="UniProtKB/TrEMBL:Q7TLA0"
FT /protein_id="AAP37409.1"
FT /translation="MQSLSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYISIN
FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP"
FT gene complement(1499. .2584)
FT /gene="AC1"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1"
FT /note="replication initiator protein"
FT /db_xref="GOA:Q7TL99"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q7TL99"
FT /protein_id="AAP37410.1"
FT /translation="MSPPRRFRINAKNYFLTYPKCSLTKEDALSQLQTLETPTAKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH
FT NLNTNLDRIFQPPSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNTSYKEYLDEEKNAALKHWAIKNAVFITLEEPL
FT YSGRENIAPTEEEEEHSQEAS"
FT gene complement(2251. .2427)
FT /gene="AC4"
FT CDS complement(2251. .2427)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q7TL98"
FT /protein_id="AAP37411.1"
FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQH
FT QTSKSISTKTETF"
XX
SQ Sequence 2740 BP; 745 A; 573 C; 607 G; 815 T; 0 other;
ay286316 Length: 2740 16-NOV-2006 Type: N Check: 7826 ..
1 accgaatggc cgcgcaaatt tttaggtggg ccctcaacca ataaaattcg
51 agctacatgg cttctttgct gtgcggggac caataaatag acttactcac
101 taagtttgga tccacaaata tgtgggatcc attattgcac gaatttccag
151 aaagcgttca tggtgtcagg tgcatgctag ctgtaaaata tctccaagag
201 atagaaaaga actattcccc agacacagtc ggatacgatc ttgtccgaga
251 tctaattctt gttcttcgag caaagaacta tggtgaagcg accagcagat
301 atcatctttt caacgcccgc atcgaaagta cgccgacgtc tcaacttcga
351 cagccccttt ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatatacaga
451 atgtatagaa gtcccgacgt gccaagggga tgcgaaggtc cttgtaaggt
501 gcagtccttt gaatctaggc acgatgtctc tcatattggc aaagtcatgt
551 gtgttagtga tgttacccga ggttctggac tcactcatcg cgtagggaag
601 cgattttgtg tgaaatctgt ctatgtgctg gggaagatat ggatggatga
651 aaacatcaag acaaaaaacc atactaacag tgtcatgttt tttttggtcc
701 gtgaccgtcg tcctacagga tctccacaag attttgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gtcttacgga agtggcatgc tactgtgacg ggaggaacat
851 atgcatctaa ggagcaagca ttagttagca agtttgttag ggttaataat
901 tatgttgtgt ataaccaaca agaggccggc aagtatgaga atcatactga
951 aaacgcatta atgttgtata tggcctgtac tcatgcatca aatcctgtgt
1001 atgctacttt gaaaatccgg atctatttct atgattcggt aacaaattaa
1051 taaatatcga gttttatatc atatgaagta catacatcaa tcgtttgttc
1101 cattacatta tccaatacat gataaactgc tcttattaca ttataaattc
1151 ctattacacc aaccatatcc aggtacctaa ggacctgtgt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt
1301 gtatttgaat attgatgatg tcgtgctgtc ttaggaaggg tctgctgttg
1351 tgtttcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gctcgatccg cagtgatgga ctcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatgtaatac gtacacccac actgcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgataaaga ctgcattctt
1601 gattgcccag tgcttcagtg ctgcgttttt ttcttcgtcc agatattcct
1651 tatagctggt gtttggacct ttattgcaca ggaagatagt gggaattcca
1701 cctttaatca tgactggctt tccgtatttc gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaagtgctt tagataatgt ggatcaacgt
1801 catcaatgac gttgtaccag gcctcattgc tatagacctt tgggctcaga
1851 tcaagatgtc cacacaagta attgtggggt cctaaacaac gagcccacat
1901 tgttttgccc gttctactat ccccctctat gactatgctt atgggcctaa
1951 aaggccgcgc agcggcacac accacatttg acgagaccca atcgacgagt
2001 tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag aaacataaat
2051 ctcagaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa
2101 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaacgca
2151 tcgtctttat ttcccgtgtt aatcgcctga gcatatgcat cgtttgccgt
2201 ttgttgacca ccacgagcag atcgtccatc gatctggaaa acaccccatt
2251 ctagaacgtc tccgtctttg tcgatatact ttttgacgtc tgatgctgat
2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggaaac
2351 caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacatatc
2451 ttgatgaatt ttttcgcagt tggggtttct agggtttgca gttgggaaag
2501 tgcgtcctcc ttagttagag agcactttgg atatgtgagg aaatagtttt
2551 tggcatttat tctaaaacga cgtggcggag acataaaact tgtcgttttg
2601 attcggcgtc cctcaacttc ttctatgtaa ttggtgtctg gagtccttta
2651 tataggtaag acaccatatg gcagaattgt aattttgaaa agaaaattac
2701 tttaattcaa attccctaaa gcggccattc gtttaatatt