Sequence of DPV Iranian wheat stripe virus

Iranian wheat stripe virus segment RNA4, complete sequence.

ACC No: AY312436

Dated: 2006-01-25 | Length: 1831 | CRC: 250263104

                
ID   AY312436   standard; genomic RNA; VRL; 1831 BP.
XX
AC   AY312436;
XX
SV   AY312436.1
XX
DT   08-JUL-2003 (Rel. 76, Created)
DT   25-JAN-2006 (Rel. 86, Last updated, Version 2)
XX
DE   Iranian wheat stripe virus segment RNA4, complete sequence.
XX
KW   .
XX
OS   Iranian wheat stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN   [1]
RP   1-1831
RX   PUBMED; 16328148.
RA   Heydarnejad J., Barclay W.S., Izadpanah K., Hunter F.R., Gooding M.J.;
RT   "Molecular characterization of Iranian wheat stripe virus shows its
RT   taxonomic position as a distinct species in the genus Tenuivirus";
RL   Arch. Virol. 151(2):217-227(2006).
XX
RN   [2]
RP   1-1831
RA   Heydarnejad J., Barclay W.S., Izadpanah K., Hunter F.R., Gooding M.J.;
RT   ;
RL   Submitted (03-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Plant Virus Research Center, Shiraz University, Shiraz, Fars 71444, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1831
FT                   /db_xref="taxon:236807"
FT                   /mol_type="genomic RNA"
FT                   /organism="Iranian wheat stripe virus"
FT                   /segment="RNA4"
FT   gene            54. .578
FT                   /gene="pv4"
FT   CDS             54. .578
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TBL6"
FT                   /note="nonstructural protein 4"
FT                   /gene="pv4"
FT                   /product="NS4 protein"
FT                   /protein_id="AAP82277.1"
FT                   /translation="MDFLKTDVSVGPIDGLNYRLLYDLLPSKVSDNITLPDLKTPDKVT
FT                   EDTKKLILCGFIYVAYHHPIETDPSFTKVHKHLPSISESFLIHLVGQDDSNDALMISKL
FT                   FDILQEKLGDWITINFLKHNNRMSKEQIKTLCETIVELAKAEGGDTEEYEIVWKKMPSY
FT                   YSNLLMQMLHK"
FT   gene            complement(940. .1794)
FT                   /gene="pc4"
FT   CDS             complement(940. .1794)
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TBL5"
FT                   /gene="pc4"
FT                   /product="pc4 protein"
FT                   /protein_id="AAP82278.1"
FT                   /translation="MSLAKFTSFGKSTLLTDDLTEKAAEKHERSNKKKQAMSSRPLNKG
FT                   RLTIDTAATVLGLEPFSFADVRANSYDMFVAKQDYSICANRKAHFIIDSSPLMFRKPFQ
FT                   TFPFFRVATFAVVWIGIKGRATGTVTFRIIDKSYKDPTKQVEVEVCYPMSKNFAVLGSL
FT                   PNFLSYEDADKMQVEILVKDDSVENCVIARSLWFWGIERTDFPVPMEPQKTVMFEFEPL
FT                   PDRTINHLGKFKNFTTDVVQRAVTTAFTTKQISEIDPGVEFGVTKQPGLVPLIKKRQPE
FT                   LEI"
XX
SQ   Sequence 1831 BP; 559 A; 398 C; 352 G; 522 T; 0 other;

ay312436 Length: 1831  25-JAN-2006  Type: N  Check: 5680  ..

       1  acacaaagtc cagggcgtaa aacataaatc gaatacaatt ataatcagac
      51  tacatggact ttctgaaaac tgatgtctct gttgggccta ttgatggatt
     101  gaactatagg cttttatatg atcttttacc atcaaaagtg agtgacaata
     151  tcactctacc agatcttaag actcctgaca aagttaccga agataccaag
     201  aagttgatct tatgtggctt catatatgta gcttatcatc atcctatcga
     251  gactgatcct agcttcacca aagtgcataa gcacctaccc tctattagtg
     301  agtccttctt aattcacttg gttggtcaag atgattccaa tgatgctctg
     351  atgataagta agctatttga catactacag gagaaacttg gtgactggat
     401  caccataaat tttctgaagc ataacaacag aatgtcaaaa gaacagatca
     451  aaacactatg tgagactata gtggagctag ccaaggcaga aggtggagac
     501  acagaagaat atgaaatagt gtggaagaag atgccttcat actactccaa
     551  tctcttgatg cagatgctgc acaagtaaca aaatccaaga gtgggattaa
     601  tatcttgtac agcctatata ctaaaagaca acaaaatcac accatcatag
     651  gttcaaaacc acactcataa caacgaaaca caaagccaaa gggccaaaca
     701  aacacagcta cacacactca ctccattggg gaaatagttg aaattaaata
     751  tggtgctatg cacctcatcc ggagcgtcta gcggataggg tgcttagcac
     801  cccttataag aataattaga gtgtccatgc ttagcataca cactgtgatt
     851  agctagttct actttaacct actatcagac tgagtctgtg atctgccatc
     901  atagatggtc taattagcca taggctctct ttagcacctt caaatctcga
     951  gttctggctg cctcttctta atcagaggca ccaatcctgg ctgcttagtg
    1001  acaccaaact ctaccccagg atcaatttca gatatctgct tagttgtgaa
    1051  agctgtagtg acagctctct ggactacatc tgtagtgaag ttcttgaact
    1101  tgcccagatg atttatagtt ctgtctggta gaggttcaaa ctcaaacatt
    1151  acagtctttt gaggctccat aggaactgga aaatcagttc tctcaattcc
    1201  ccagaaccag agagatctag caatcacaca gttttcaaca gagtcatctt
    1251  tcaccaagat ctccacctgc atcttatcag catcctcata tgataagaaa
    1301  tttggcaaag agccaaggac tgcaaagttc ttcgacatag gatagcagac
    1351  ttcaacctct acctgcttgg ttgggtcttt gtatgattta tcaataatcc
    1401  ggaaagtcac cgttccagtg gctctccctt ttattccaat ccagaccacg
    1451  gcaaaagttg caactctgaa gaatgggaaa gtctggaaag gtttacggaa
    1501  catcaaaggt gacgagtcta tgatgaagtg agcctttctg tttgcacaaa
    1551  ttgaatagtc ttgtttggct acgaacatgt catagctatt tgctcggaca
    1601  tctgcgaagc taaagggctc caaacctagt acagttgctg ctgtatcaat
    1651  agtgagccta cccttattca gaggtcggct actcattgct tgcttctttt
    1701  tgttggacct ctcatgtttc tctgcagctt tctcagtgag atcatctgtc
    1751  aggagtgtgc tctttccaaa tgaagtgaac ttagctagag acatgtttga
    1801  tttagatttc ttaattgccc tgactttgtg t