Sequence of DPV Machupo virus
Machupo virus strain Carvallo segment L, complete sequence.
ACC No: AY358021
Dated: 2003-08-29 | Length: 7196 | CRC: 1985956701
!!NA_SEQUENCE 1.0
ID AY358021 standard; genomic RNA; VRL; 7196 BP.
XX
AC AY358021;
XX
SV AY358021.2
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 29-AUG-2003 (Rel. 77, Last updated, Version 2)
XX
DE Machupo virus strain Carvallo segment L, complete sequence.
XX
KW .
XX
OS Machupo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7196
RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H.,
RA Smith K.L., McCready P.M., Chain P.S.G.;
RT ;
RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East
RL Avenue, Livermore, CA 94550, USA
XX
CC On Aug 27, 2003 this sequence version replaced gi:33868606.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7196
FT /db_xref="taxon:11628"
FT /mol_type="genomic RNA"
FT /note="large segment"
FT /organism="Machupo virus"
FT /strain="Carvallo"
FT /segment="L"
FT primer_bind 1. .20
FT CDS 98. .382
FT /codon_start=1
FT /note="zinc finger protein"
FT /product="Z protein"
FT /protein_id="AAQ55247.1"
FT /translation="MGNCNKPPKRPPNTQTSSNQPSAEFRRTAPPSLYGRYNCKCCWFA
FT DTNLITCNDHYLCLRCHQTMLRNSELCHICWKPLPTSITVPVEPSAPPP"
FT misc_feature 396. .462
FT /note="hairpin intergenic region"
FT CDS complement(465. .7094)
FT /codon_start=1
FT /note="L polymerase"
FT /product="L protein"
FT /protein_id="AAQ55248.1"
FT /translation="MDEYVQELKGLIRKHIPERCEFGHQKVTFLSQVHPSPLLTEGFKL
FT LSSLVELESCEAHACQANTDQRFVDVILSDNGILCPTLPKVIPDGFKLTGKTLILLETF
FT VRVNPDEFEKKWKADMSKLLNLKHDLQKSGVTLVPIVDGRSNYNNRFVADWVIERIRWL
FT LIGILKASKSMLEIDIEDQEYQRLIHSLSNVKNQSLGLENLEHLKRNSLDYDERLNESL
FT FIGLKGDIRESTVREELIKLKLWFKDEVFSKGLGKFKLTDRRELLESLSSLGAHLDSDV
FT SSCPFCNNKLMEIVYNVTFSCVERTDGVATVDQQFSTTHSNIEKHYLSVLSLCNKIKGL
FT KVFNTRRNTLLFLDLIMVNLMVDISDSCQDAIESLRKSGLIVGQMVMLVNDRVLDILEA
FT VKLIRKKIGTNPNWVKNCSKILERSHPEIWHHLSTLIKQPDFNSLISIAQHLVSDRPIM
FT RYSVERGSDKICRHKLFQEMSSFEQMRLFKTLSSISLSLINSMKTSFSSRLLVNEREFS
FT KYFGNVRLRECYAQRFYLAESLVGFLFYQKTGERSRCYSVYLSDNGVMSEQGSFYCDPK
FT RFFLPVFSDEVLAGMCEEMTSWLDFDTGLMNDTGPILRLLVLAILCSPSKRNQTFLQGL
FT RYFLMAFANQIHHIDLTSKLVVECKSSSEVVVQRLAVGLFIRLLSGESDASLFFSRRFK
FT YLLNVSYLCHLITKETPDRLTDQMKCFEKFIEPKVKFGCAVVNPSLNGKLTVDQEDIMI
FT NGLKKFFSKSLRDTEDVQTPGVCKELLNYCVSLFNRGKLKVSGELKNNPFRPNITSTAL
FT DLSSNKSVVIPKLDELGNILSTYDKEKLVSACVSSMAERFKTKGRYNLDPDSTDYLILK
FT NLTGLVSAGPKAKSTQEELSLMYEALTEEQVESFNEIKHDVQVALAKMADNSVNTRTKN
FT LGRADNSVKNGNNPLDNLWSPFGVMKEIRAEVSLHEVKDFDPDVLPPEVYKELCDAVYK
FT SSEKCNFFLEGVLDVCPLGLLLKNLTTSSYVDEEYFMCFKYLLIQGHFDQKLGSYEHKS
FT RSRLGFTDETLRLKDEVRLSIRESNSEAIADKLDKSYFTNAALRNLCFYSEDSPTEFTS
FT ISSNSGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEAVGNSMKYTCLNSEKE
FT FERAICDMKMAVNNGDLSCSYDHSKWGPTMSPALFLALLQMLELRTPVDRSKIDLDSVK
FT SILKWHLHKVVEVPINVAEAYCIGKLKRSLGLMGCGSTSLSEEFFHQTMQLNGQIPSHI
FT MSVLDMGQGILHNTSDLYGLITEQFLCYALDLLYDVIPVSYTSSDDQITLIKTPSLDIE
FT GGSDAAEWLEMICFHEFLSSKLNKFVSPKSVIGTFVAEFKSRFFVMGEETPLLTKFVAA
FT ALHNVKCKTPTQLSETIDTICDQCIANGVSTKIVTRISKRVNQLIRYSGYGETPFGAIE
FT DQDVKDWVDGSRGYRLQRKIEAIFHDDKETSFIRNCARKVFNDIKRGRIFEENLINLIG
FT RGGDEALTGFLQYAGCSEQEVNRVLNYRWVNLSSFGDLRLVLRTKLMTSRRVLEREEVP
FT TLIKTLQSKLSRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFL
FT YIKEVYSGVSACTCEICALKPKIIYCNNSLNKVSQFSKPILWDYFSLVLTNACELGEWV
FT FSTVKEPQKPLVLNNQNFFWAVKPKVVRQIEDQLGMNHVLQSIRRNYPVLFDEHLTPFM
FT NDLQVSRTMDSGRLKFLDVCIALDMMNENLGIISHLLKTRDNSVYIVKQSDCALAHIRQ
FT SSYTDWELGLSPQQICTNFKTQLVLSSMVNPLVLSTSCLKSFFWFNEVLELEDDSQIEL
FT AELTDFALMVKNQNVSRAMFVEDIAMGYVVSNFEGVRISLSNVMVDGVQLPPQEKAPDI
FT GELFGLKAENVIVGLVVQIDHVRMSTKFKLKRKMVYSFSLECIMDVGEIQNKEVILKVV
FT AVDQSVSGSGGNHMLLDGVSVVASLPLFTGQASFDLAAMLIESNLAGSNDNFLMRNVTL
FT DLGGFSPELSDKYSYRLSGPENQEDPLVLKDGAFYVGGERLSTYKVEFTGDLVVKALGA
FT LEDDESVVSMLHQLWPYLKATSQVILFQQEDFTIVHDLYKKQLTKSIESFGEWIEFTNF
FT KVAYSKSLKELVISDTQGSFRLKGVMCRPLASTPQVEDIE"
FT primer_bind complement(7178. .7196)
XX
SQ Sequence 7196 BP; 2098 A; 1728 C; 1224 G; 2146 T; 0 other;
AY358021 Length: 7196 December 5, 2003 15:01 Type: N Check: 1558 ..
1 gcgcacagtg gatcctaggc gtaactagat caagttttgc tgagtaaaat
51 tttaaacaca ttgagtatcc gtgcaagaca gcgcagagct ccccacaatg
101 ggcaactgca ataagcctcc caagaggcct cccaacacac aaacatcatc
151 caaccaaccc tcagcagagt tcaggagaac agccccaccc agtctctatg
201 gtcgctacaa ctgcaaatgc tgttggtttg ccgacacaaa cttgattaca
251 tgtaacgacc actacttgtg cctgagatgt catcaaacaa tgctcaggaa
301 ttctgaactc tgtcacatat gctggaaacc actaccgaca tccatcacag
351 ttcccgtgga gccaagtgcc cccccaccat gaacatcccc aaactcggtc
401 cacaagaccc ccggggggcc ccaacggggc ccccacgggg gatccccggg
451 ggtcttgggc tgcgtcactc aatgtcctcc acttggggcg tgcttgccag
501 gggtctacac atcacaccct tcagtctgaa tgacccctgg gtgtctgata
551 tcacaagctc tttgagtgat ttactatagg caaccttaaa gttggtaaat
601 tcgatccatt cgccaaagct ttcaattgat tttgtgagct gtttcttgta
651 caaatcatga acaatggtga aatcttcctg ttgaaacaaa ataacctgtg
701 atgttgcttt caaataaggc cacagttggt gcagcataga aacaacactc
751 tcatcatctt ctagggcccc caatgctttc accacaagat cacctgtaaa
801 ctctacttta tatgtggaca gtctctcacc tcccacatag aaggcaccat
851 ccttcaagac caacgggtct tcttggtttt caggtcccga gagcctgtag
901 gaatatttgt cactcaactc tggggaaaat ccacctaaat ccaaggtaac
951 atttctcatt aagaaattat catttgagcc agccagattt gactcgatta
1001 acattgcagc caaatcaaaa ctggcctgcc cagtaaataa tgggaggctt
1051 gcaacaaccg acacaccatc cagcagcata tggtttcctc ctgacccaga
1101 cacagactga tcgactgcca ccaccttcaa aataacctct ttgttctgga
1151 tctctcctac atccattatg cattccaaag agaaactata caccattttt
1201 ctcttcaact tgaacttcgt tgacattctt acatgatcga tctgcaccac
1251 taggcccaca atgacattct cagccttcaa tccaaacaat tcacctatat
1301 caggagcctt ctcctgaggc ggcaattgaa caccatcaac catcacgttg
1351 cttaacgaga ttctaacacc ctcgaagtta gagacaacat accccattgc
1401 gatatcctcc acaaacatag ctctggaaac attttgattc ttaaccatta
1451 aggcaaagtc agtcaattct gctaactcaa tttgactatc atcctctagc
1501 tctaggactt cattgaacca gaaaaatgac ttcagacaag atgttgaaag
1551 gactaatggg tttaccattg aagataggac cagctgggtc ttgaagtttg
1601 tgcaaatctg ctgcggacta agtcctaatt cccaatctgt gtagcttgac
1651 tgccttatgt gtgctaaggc acaatcactt tgtttaacta tgtaaacact
1701 gttgtctctg gtcttcaaca ggtgactgat gataccaagg ttttcattca
1751 tcatgtctaa agcaatgcag acatccagaa attttagcct cccgctatcc
1801 attgttctgc tgacctgaag atcattcata aatggagtca agtgttcgtc
1851 aaaaagaact ggataatttc tccttataga ttgcagaaca tggttcattc
1901 ccagttggtc ttcaatttgt ctcaccactt taggcttcac agcccaaaaa
1951 aagttttggt tgttcaacac caatggcttt tggggctctt taactgtgga
2001 aaacacccac tctccaagtt cacatgcatt tgttaggact aatgaaaaat
2051 aatcccacaa aataggtttt gaaaactgac tcactttgtt aagtgagttg
2101 ttgcaatata tgatcttggg ctttaacgca catatttcac atgtacaagc
2151 acttacacct gaatacactt cttttatgta taagaatccc cctttcccat
2201 ctctaacgca cttgctaccc atgcttttgc agaacccaat aaaacctgag
2251 gcaacggatg actggaaagc tgacttatta attgactcag caaggatctt
2301 cttaactcct tttgtgaagt ttctggaaag tttggattgc aaggttttaa
2351 ttaaagttgg cacttcctcc ctttcaagaa ctcttctact tgtcatcaac
2401 tttgtcctca aaactaacct aagatctcca aaacttgata aattcaccca
2451 tctatagttc aacacgcgat taacttcttg ttcactgcaa cctgcatact
2501 gtaaaaaacc agtcaaggcc tcatcaccac ctctaccaat caaattgatc
2551 agattctcct caaatattct gccacgcttt atatcattaa aaacctttct
2601 ggcacagttc ctaataaaag aggtttcctt gtcatcatga aagatagctt
2651 caatctttct ctgtagacgg taaccccttg agccatccac ccagtctttc
2701 acatcttgat cttcaatagc cccaaagggg gtctctccat atccggagta
2751 tctaattaat tggttaactc gcttagatat tcttgtcact attttggtgc
2801 tgactccatt tgcaatgcat tgatcacaga tggtatctat agtttctgac
2851 aattgtgtgg gtgttttaca ctttacattg tgtaaagctg cagcaacaaa
2901 ctttgtgagc aatggtgttt cttcacccat gacaaaaaat cttgatttga
2951 actctgcgac aaaagtcccg atgacactct tggggctgac aaacttattc
3001 aatttagatg acagaaactc atggaagcag atcatctcga gccactccgc
3051 agcatctgaa cccccttcta tatccagaga aggtgtcttg ataagagtga
3101 tctgatcgtc actagaggta tatgacacag ggattacatc atacaaaaga
3151 tcgagtgcat aacacaaaaa ttgctctgtg attaatccat acaaatcaga
3201 agtgttatgt agtatccctt gccccatgtc caaaacagac ataatgtgac
3251 taggaatctg accatttaac tgcatggtct gatggaagaa ttcttcactc
3301 aaactggtgg aaccgcagcc catcaatcca agggaccttt ttagctttcc
3351 aatacagtag gcttcagcca cattgatagg cacttctaca actttgtgaa
3401 ggtgccattt cagtatactt ttaacagaat caagatcaat ttttgacctg
3451 tcaacagggg ttctcaattc cagcatttgt aataatgcca ggaaaagtgc
3501 aggactcatt gttggacccc attttgagtg atcataagaa catgacaaat
3551 caccattatt cactgccatc ttcatgtcac aaatggcccg ttcaaattct
3601 ttttcagagt tcagacaggt gtacttcata gaattcccta cagcttcaga
3651 aaaatcctcc accaatcttg tcatcagttt tgtgttgagg tctcctacat
3701 agagctctct gtttgaaccc acctgttcct tataacttag accaaattta
3751 aggtttcctg agttggaact aatgcttgtg aactcagtgg gcgaatcttc
3801 agaataaaaa cacagattcc ttaatgcggc attggtgaag taacttttat
3851 ccaacttgtc tgcaatcgcc tctgagttgc tttctcttat actaagtcta
3901 acctcgtctt tgagtcttaa tgtctcatcg gtgaaaccca gtctagatct
3951 gcttttgtgc tcataacttc ctagtttttg atcaaagtga ccttgtatca
4001 agaggtattt aaaacacata aaatactctt cgtccacata acttgatgtg
4051 gtcagatttt tcagcagcaa ccccaaggga cagacatcaa gtactccctc
4101 aaggaagaag ttgcattttt ctgacgattt gtaaactgcg tcacacaact
4151 ccttgtacac ttcaggagga agaacatctg ggtcaaaatc cttgacttcg
4201 tgtaacgata cttcagctct aatctctttc atcaccccaa aaggtgacca
4251 caaattgtcc aaaggattat tcccattttt tactgaatta tcagctcggc
4301 cgagattttt agttcttgtg ttcacactgt tgtcagccat cttggctaag
4351 gcaacttgta catcatgttt aatttcgttg aatgattcaa cctgttcttc
4401 tgttaacgcc tcgtacatta aagacaattc ttcttgagta ctcttagctt
4451 tcggccctgc actcaccaaa cctgtcagat tttttagaat caaatagtca
4501 gttgaatctg gatctagatt gtaccttcct ttggttttaa acctctctgc
4551 catagaggaa acacatgctg acactagttt ttccttgtca taggtggaga
4601 ggatgttgcc taactcatct agttttggta taacaacact cttgttactt
4651 gataagtcca aagcagtact tgttatatta ggtctaaagg gattattttt
4701 aagctcccca gaaaccttta actttcccct attaaacaaa gacacacaat
4751 aatttaagag ttctttacac acacctggtg tctgcacatc ctcagtgtcc
4801 cttaaggatt ttgaaaaaaa cttctttaaa ccatttatca taatgtcttc
4851 ctgatctaca gtcagctttc catttagaga tgggttcacc acagcacatc
4901 caaacttaac tttgggctca atgaacttct caaaacattt catctgatct
4951 gttaatcggt caggcgtttc ttttgtgatt aaatggcaaa ggtaactaac
5001 atttagcaga tatttgaatc ttcttgagaa aaataaactt gcatctgact
5051 caccactaag tagtctaatg aagagtccca ctgcaagcct ttgaaccacc
5101 acttctgaac ttgacttgca ttccactacc aatttagatg tcaggtcgat
5151 atgatgaatt tggttagcaa aagccattaa aaagtatctt aatccttgta
5201 gaaaggtttg attcctcttt gatggggagc agagtatagc cagaactaac
5251 aaccttaata tgggcccagt gtcattcatt aatccggtgt caaaatccag
5301 ccagcttgtc atttcctcac acattccagc caaaacttca tcagaaaaaa
5351 caggcaagaa gaatctcttt ggatcacaat aaaatgaacc ctgttctgac
5401 atcacaccgt tatcagataa ataaactgaa taacacctgg acctttcacc
5451 tgtcttctga tagaaaagaa agccaactaa actctcagcc aaataaaacc
5501 tttgggcata acactctctg agtctaacat taccaaagta cttagaaaat
5551 tctctctcat tcacaagcaa tcttgaagaa aaggatgtct tcatagaatt
5601 gattagtgac aaggatattg aggacaaagt cttgaataac ctcatttgct
5651 caaagctaga catctcctgg aacaatttat gtctacaaat cttatcagag
5701 cctctttcca ctgaatacct cataattggt ctatctgaga caagatgttg
5751 ggctattgaa atcaagctat tgaagtctgg ttgctttatc aaagtgctta
5801 agtgatgcca tatttctgga tgtgatctct ctagaatttt tgaacaattc
5851 ttgacccaat tgggattagt cccaatcttt tttctgatga gtttaacagc
5901 ctccaaaatg tccagcactc tatcattcac taacataacc atctgaccca
5951 ctatcaatcc cgattttctc aaactttcaa tcgcgtcctg gcaactgtca
6001 ctaatgtcaa ccatcaaatt aaccattatg agatctaaga atagtagggt
6051 gtttcttctg gtgttaaaga ccttcaaccc ctttatttta ttgcacaaag
6101 ataagacact aaggtaatgt ttttctatgt tagagtgtgt ggtgctaaac
6151 tgctggtcca ctgtggctac accatcggtc ctttcaacac agctaaaggt
6201 cacattgtaa acaatttcca tcaacttatt gttacaaaag ggacagcttg
6251 acacatcact atctagatga gcacctaagc tcgataggga ctctaataat
6301 tcccttctgt cagtcaattt gaatttgccc agacctttgc tgaagacctc
6351 atccttgaac cacaatttaa gtttgatgag ttcttccctc actgtcgact
6401 ctctaatgtc tcctttcaaa ccaataaaca atgactcatt caacctctca
6451 tcataatcta aagaattcct tttcaaatgt tctaggtttt ccaaccccaa
6501 gctttgattc ttaacgtttg atagactatg aattaatcgt tgatattcct
6551 ggtcctcaat atcaatctca agcatggatt tggatgcttt caaaatcccg
6601 ataagcaacc atcttattct ttcaatcacc caatcagcaa caaatctatt
6651 gttgtaattg ctcctgccat caacaatagg aaccaaagtc acgcccgact
6701 tttgcaggtc atgcttcagg tttaaaagct ttgacatgtc agctttccat
6751 ttcttctcga actcatctgg gtttactctt acaaaggtct ccagcagaat
6801 tagggttttc ccagttaatt tgaacccatc ggggatcacc tttggtaaag
6851 ttggacataa aatcccattg tcagatagta ttacatctac gaatctttga
6901 tcagtgtttg cctggcaggc gtgtgcttca caggactcaa gttcaacaag
6951 actagagagc aacttgaagc cttctgtgag caagggactg ggatgcacct
7001 gagataggaa tgtgaccttt tgatgtccaa actcgcacct ctcaggaatg
7051 tgctttctaa taagcccttt caactcttgg acatattcat ccatggccaa
7101 gtgtcgccta ggatccactg tgcgcactgg ccgtcgtttt acacgccttc
7151 accacagcac atccaaactt aacgacggcc taggatccac tgtgcg