Sequence of DPV Junin virus
Junin virus strain XJ13 segment L, complete sequence.
ACC No: AY358022
Dated: 2003-08-29 | Length: 7114 | CRC: 992583228
!!NA_SEQUENCE 1.0
ID AY358022 standard; genomic RNA; VRL; 7114 BP.
XX
AC AY358022;
XX
SV AY358022.2
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 29-AUG-2003 (Rel. 77, Last updated, Version 2)
XX
DE Junin virus strain XJ13 segment L, complete sequence.
XX
KW .
XX
OS Junin virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7114
RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H.,
RA Smith K.L., McCready P.M., Chain P.S.G.;
RT ;
RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East
RL Avenue, Livermore, CA 94550, USA
XX
CC On Aug 27, 2003 this sequence version replaced gi:33868609.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7114
FT /db_xref="taxon:11619"
FT /mol_type="genomic RNA"
FT /note="large segment"
FT /organism="Junin virus"
FT /strain="XJ13"
FT /segment="L"
FT primer_bind 1. .20
FT CDS 84. .368
FT /codon_start=1
FT /note="zinc finger protein"
FT /product="Z protein"
FT /protein_id="AAQ55249.1"
FT /translation="MGNCNGASKSNQPDSSRATQPAAEFRRVAHSSLYGRYNCKCCWFA
FT DTNLITCNDHYLCLRCHQGMLRNSDLCNICWKPLPTTITVPVEPTAPPP"
FT misc_feature 395. .441
FT /note="hairpin intergenic region"
FT CDS complement(452. .7084)
FT /codon_start=1
FT /note="L polymerase"
FT /product="L protein"
FT /protein_id="AAQ55250.1"
FT /translation="MEESVNEIKSLIRKHFPERQELAYQRDIFLSQHHPSSLLLEGFKL
FT LSSLVELESCEAHACQINSDQKFVDVILSDHGILCPTLPKVIPDGFKLTGKTLILLETF
FT VRVNPDEFERKWKSDMSKLLNLKSDLLRAGITLVPVVDGRSSYSNRFLADWVVERVRWL
FT LIDILKKSKFMQEINIEEQEYQRLIHSLSNTKNQSLGLENIECLKKNSLGYDERLNESL
FT FVGVRGDIRESVIREELIKLRFWFKKEIFDKQLGKFKFSQKSKLINDLILLGSHKDSDV
FT PSCPFCANKLMDVVYSIALHPIDEVNMESQSDENSISIDAVERCYLQALSVCNKVKGLK
FT VFNTRRNTLLFLDLVLLNLLCDLFKTHDDAIVRLRNAGIVVGQMLMLVNDRLLDILEAI
FT KLIRKKLMTSPKWVQVCSRTLKNSHQDLWSQLEKLIKHPDMDSLMILAQALVSDRPVMR
FT YTIDKEFEKICRHQPFSSLVEGEQKKLFRILSSISLALVNSMKTSFSSRLLINEREYSR
FT YFGNVRLRECYVQRFHLTKNTFGLLFYQKTGEKSRCYSIYLSINGVLEEQGSFYCDPKR
FT FFLPIFSEDVLIEMCEEMTSWLDFSHELMTMTRPILRLLVLAVLCSPSKRNQTFLQGLR
FT YFLMAYANQIHHVDLMSKLRVDCMSGSEVLIQRMAVELFQTILGEGEDADLYFARRFKY
FT LLNVSYLCHLVTKETPDRLTDQIKCFEKFIEPKVKFDCVVVNPPLSGSLTLEQEDTMIR
FT GLDRFFSKEAKTSSDTQIPGVCKEILSFCISLFNRGRLKVTGELKSNPYRPNITSTALD
FT LSSNKSVVIPKLDELGNILSVYDKEKLVSTCVSTMAERFKTKGRYNLDPDSMDYLILKN
FT LTGLVSTGSRTRTNQEELSVMYESLTEDQVRAFEGIRNDVQMTLAKMANSEGTKVEITK
FT LKSKNLSVDERESLESLWAPFGVLREIKAEVSMHEVKDFDPDVLRSDVYKELCDAVYLS
FT PFKLTYFLEAPQDICPLGLLLKNLTTIAYQEDEFFECFKYLLIQGHYDQKLGSYEHRSR
FT SRLGFSSEVLRLKDEVRLSTRESNSEAIADKLDKSYFTNAALRNLCFYSDDSPTEFTSI
FT SSNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEAVGSSMRYTCLNSEKEF
FT ERAICDMKMAVNNGDLSCSYDHSKWGPTMSPALFLSFLYTLELKNPRDRTKVNLEPVMN
FT ILKWHLHKVVEVPINVAEAYCVGKLKRSLGLMGCDCTSVGEEFFHQYLQSRDQVPSHIM
FT SVLDMGQGILHNTSDLYGLITEQFLCYALDLLYDVIPVTYTSSDDQVSLIKIPCLSDEK
FT FQDRTELLEMVCFHEFLSSKLNKFISPKSVIGTFVAEFKSRFFVMGEETPLLTKFVSAA
FT LHNVKCKTPTQLSETIDTICDQCIANGVSTHIVSKISIRVNQLIRYSGYRETPFGAIEE
FT QDVKDWVDGSRGYRLQRKIEAIFSDDKETMFIRNCARKVFNDIKRGKIFEENLINLISR
FT GGDEALSGFLQYAGCSEDEIRQTLDYRWVNLASFGDLRLVLRTKLMTSRRVLEKEEMPT
FT LIRTIQSRLSRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFLY
FT IKDIFTRIMPCLCGICERKPKVIYCQKSLKEVNQFSKPILWDYFSLVLTNACELGEWVF
FT SAIKSPQAPLVLCNKNFFWAVKPKAVRQIEDQLGMNHVLHSIRRNYPKLFEEHLAPFMN
FT DLQVNRSLDSGRLKFLDVCVALDMMNENLGIISHLLKVRDNNVYIVKQSDCASAHVRQS
FT EYTNWEVGISPQQVCRNFMVQVVLSSMINPLVMSTSCLKSFFWFNEVLDLEDDSQVDLA
FT ELTDFTLSIRNNKVSRAMFVEDIAMGYVVSSFDNIKVFLEGVSVDNISLLPQEDMMDLH
FT TVLRNVACQEAVKLKLIIQVEHTRVSTKFKLRRKMVYSYTIVSSLGVDDVGTPELELNV
FT DAMSQCVSGSEGSHSLLDGALVIASLPLFTGHESFDLAGLFIDAGYAATNDDNILSHVK
FT FNFGDFYSELSNKYAYDLIGPDNPGEPLVLKEGIFYRGNERLSTYRVELSGDVIVKAIG
FT ALEDIDSVETLLSQLWPYLKTTSQTILFQQEDFVLVYDLHKEQLIRSLDKFGDWLEFSN
FT FKVAFSRSLNDLLISDPQGQFRLKGVTCRPLKHKVEIKDID"
FT primer_bind complement(7096. .7114)
XX
SQ Sequence 7114 BP; 2069 A; 1627 C; 1248 G; 2170 T; 0 other;
AY358022 Length: 7114 December 5, 2003 15:01 Type: N Check: 6285 ..
1 gcgcacagtg gatcctaggc gtaacttcat cattaaatct cagattctgc
51 tctgagtgtg acttactgcg aagaggcaga caaatgggca actgcaacgg
101 ggcatccaag tctaaccagc cagactcctc aagagccaca cagccagccg
151 cagaatttag gagggtagct cacagcagtc tatatggtag atataactgt
201 aagtgctgct ggtttgctga taccaatttg ataacctgta atgatcacta
251 cctttgttta aggtgccatc agggtatgtt aaggaattca gatctctgca
301 atatctgctg gaagcccctg cccaccacaa tcacagtacc ggtggagcca
351 acagcaccac caccataggc agactgcaca gggtcagacc cgaccccccg
401 gggggccccc atggggaccc cccgtggggg aaccccgggg gtgatgcgcc
451 attagtcaat gtctttgatc tcgactttgt gcttcagtgg cctgcatgtc
501 acccctttca atctgaactg cccttgggga tctgatatca gcaggtcatt
551 taaagatctg ctgaatgcca ccttgaaatt tgagaattcc aaccagtcac
601 caaatttatc aagtgaacgg atcaactgct ctttgtgtag atcataaacg
651 aggacaaagt cctcttgctg aaataatatt gtttgtgatg ttgtttttag
701 ataaggccat agttggctta ataaggtttc cacactatca atgtcctcta
751 gtgctccaat tgccttgact atgacatccc cagacaactc aactctatat
801 gttgacaacc tttcattacc tctgtaaaag ataccctctt tcaagacaag
851 aggttctcct gggttatctg gcccaatgag gtcatatgca tacttgttac
901 ttagttcaga ataaaagtca ccaaagttga acttaacatg gctcagaata
951 ttgtcatcat ttgtcgcagc gtagcctgca tcaataaaca agccagctag
1001 gtcaaagctc tcatggcctg tgaacaatgg taggctagcg ataaccagtg
1051 caccatccaa caatgagtgg cttccctcag acccagaaac acattgactc
1101 attgcatcca cattcagctc taattcaggg gtaccgacat catccactcc
1151 tagtgaactg acaatggtgt aactgtacac catctttctt ctaagtttaa
1201 attttgtcga aactcgtgtg tgttctactt gaatgatcaa ttttagtttc
1251 acagcttctt ggcaagcaac attgcgcaac acagtgtgca ggtccatcat
1301 gtcttcctga ggcaacaagg agatgttgtc aacagagaca ccctcaagga
1351 aaaccttgat attatcaaag ctagaaacta cataacccat tgcaatgtct
1401 tcaacaaaca ttgctcttga tactttatta ttcctaattg acaaggtaaa
1451 atctgtgagt tcagctagat ctacttgact gtcatcttct agatctagaa
1501 cttcattgaa ccaaaagaag gatttgagac acgatgttga catgactagt
1551 gggtttatca tcgaagataa gacaacttgc accatgaagt tcctgcaaac
1601 ttgctgtggg ctgatgccaa cttcccaatt tgtatactct gactgtctaa
1651 catgggctga agcgcaatca ctctgtttca caatataaac attattatct
1701 cttactttca ataagtgact tataatccct aagttttcat tcatcatgtc
1751 tagagccaca cagacatcta gaaacttgag tcttccacta tccaaagatc
1801 tgttcacttg aagatcattc ataaagggtg ccaaatgttc ttcaaatagt
1851 ttggggtaat ttcttcgtat agaatgcaat acatggttca tgcctaattg
1901 gtcttctatc tgtcgtactg ctttgggttt aacagcccag aagaaattct
1951 tattacataa gaccagaggg gcctgtggac tcttaatagc agaaaacacc
2001 cactccccta actcacaggc atttgtcagc accaaagaga agtaatccca
2051 caaaattggt ttagaaaatt ggttaacttc tttaagtgat ttttgacagt
2101 aaataacttt aggctttctc tcacaaattc cacaaagaca tggcattatt
2151 cgagtaaata tgtcctttat atacagaaat ccgcctttac catccctaac
2201 acacttactc cccatactct tacaaaaccc aatgaagcct gaggcaacag
2251 aagactgaaa tgcagatttg ttgattgact ctgccaagat cttcttcacg
2301 ccttttgtga aatttcttga cagcctggac tgtattgtcc ttatcaatgt
2351 tggcatctct tctttctcta acactcttcg acttgtcatg agtttggtcc
2401 tcaagaccaa cctcaagtcc ccaaagctcg ctaaattgac ccatctgtag
2451 tctagagttt gtctgatttc atcttcacta cacccggcat attgcaggaa
2501 tccggataaa gcctcatccc ctcccctgct tatcaagttg ataaggtttt
2551 cctcaaagat tttgcctctc ttaatgtcat taaacacttt cctcgcgcag
2601 ttccttataa acattgtctc cttatcatca gaaaaaatag cttcaatttt
2651 cctctgtaga cggtaccctc tagacccatc aacccagtct ttgacatctt
2701 gttcttcaat agctccaaac ggagtctctc tgtatccaga gtatctaatc
2751 aattggttga ctctaatgga aatctttgac actatatgag tgctaacccc
2801 attagcaata cattgatcac aaattgtgtc tatagtctct gacagttgtg
2851 ttggagtttt acacttaaca ttgtgtagag cagcagacac aaacttggtg
2901 agtaaaggag tctcttcacc catgacaaaa aatcttgact taaactcagc
2951 aacaaaagtt cctatcacac tctttgggct gataaacttg tttaatttag
3001 aagataagaa ttcatggaag cacaccattt ccagcagttc tgtcctgtct
3051 tgaaactttt catcactaag gcaaggaatt tttataaggc taacctggtc
3101 atcgctggag gtataagtga caggtatcac atcatacaat aagtcaagtg
3151 cataacacag aaattgttca gtaattagcc catataaatc tgatgtgttg
3201 tgcaagattc cctggcccat gtccaagaca gacattatat ggctggggac
3251 ctggtccctt gactgcagat actggtgaaa aaactcttca ccaacactag
3301 tacagtcaca acccattaaa cctaaagatc tcttcaattt ccctacacag
3351 taggcttctg caacattaat tggaacttca acgaccttat gaagatgcca
3401 tttgagaatg ttcattactg gttcaagatt cacctttgtt ctatctctgg
3451 gattcttcaa ttctaatgtg tacaaaaaag aaaggaaaag tgctgggctc
3501 atagttggtc cccatttgga gtggtcatat gaacaggaca agtcaccatt
3551 gttaacagcc attttcatat cacagattgc acgttcgaat tccttttctg
3601 aattcaagca tgtgtatctc attgaactac ccacagcttc tgagaagtct
3651 tcaactaacc tggtcatcag cttagtgttg aggtctccca catacagttc
3701 tctatttgag ccaacctgct ccttataact tagtccaaat ttcaagttcc
3751 ctgtatttga gctgatgctt gtgaactctg taggagagtc gtctgaatag
3801 aaacataaat tccgtagggc tgcatttgta aaataacttt tgtctagctt
3851 atcagcaatg gcttcagaat tgctttccct ggtactaagc cgaacctcat
3901 cctttagtct cagaacttca ctggaaaagc ccaatctaga tctacttcta
3951 tgctcataac tacccaattt ctgatcataa tgtccttgaa ttaaaagata
4001 cttgaagcat tcaaagaatt catcttcttg gtaggctatt gttgtcaaat
4051 tttttaataa caaacccaaa gggcagatgt cctgcggtgc ttcaagaaaa
4101 taagtcaatt taaatggaga tagataaaca gcatcacata actctttata
4151 cacatcagac ctgagcacat ctggatcaaa atccttcacc tcatgcattg
4201 acacctctgc tttaatctct ctcaacactc caaaaggggc ccacaatgac
4251 tcaagagact ctcgctcatc aacagataga ttctttgatt tcaacttggt
4301 gatctcaact tttgtcccct cactattagc catcttggct agtgtcattt
4351 gtacgtcatt tctaataccc tcaaaggccc ttacttgatc ctctgttaaa
4401 ctctcataca tcactgataa ttcttcttga ttggttctgg ttcttgaacc
4451 ggtgctcaca agacctgtta gattttttaa tattaagtag tccatggaat
4501 caggatcaag attatacctg ccttttgttt taaacctctc agccatagta
4551 gaaacgcatg ttgaaacaag tttctcctta tcataaacag aaagaatatt
4601 tccaagttcg tcgagcttgg ggattaccac acttttattg cttgacagat
4651 ccagagctgt gctagtgatg ttaggcctgt agggattgct tttcagttca
4701 cctgtaactt taagtcttcc tctattgaag agagaaatgc agaaggacaa
4751 aatctcttta cacactcctg gaatttgagt atctgaggaa gtcttagcct
4801 ctttggaaaa gaatctgtcc aatcctctta tcatggtgtc ctcttgttcc
4851 agtgttagac tcccacttag aggggggttt acaacaacac aatcaaactt
4901 gactttgggc tcaataaact tctcaaaaca ctttatttga tctgtcaggc
4951 gatcaggtgt ctctttggtt accaagtgac acagataact aacatttaat
5001 agatatttaa accttcttgc aaagtaaaga tctgcatctt ccccttcacc
5051 caaaattgtc tggaaaagtt ccacagccat cctctgaatc agcacctctg
5101 atccagacat gcagtcgacc cttaactttg acatcaaatc cacatgatgg
5151 atttgatttg catatgccat caagaaatat cttagacctt gtaaaaatgt
5201 ctggttcctt ttggaagggg aacagagtac agctaacact aacaatctta
5251 atattggcct tgtcattgtc atgagttcgt ggctaaaatc caaccagctg
5301 gtcatttcct cacacatttc aattaacaca tcctccgaaa atataggcag
5351 gaaaaatctc tttggatcac agtaaaaaga gccttgttct tccaataccc
5401 cattgatgga tagatagata gaatagcacc ttgacttctc acctgttttt
5451 tggtaaaaca agagaccaaa tgtgttcttt gtcagatgaa atctttgtac
5501 ataacactct cttagtctaa cattcccaaa atatctagaa tactctcttt
5551 cattgattaa caatcgggag gaaaatgatg tcttcatcga gttgaccaat
5601 gcaagggaaa tggaggacaa aatcctaaat aatttcttct gctcaccttc
5651 cactaagctg ctgaatggct gatgtctaca gattttctca aattccttgt
5701 caatagtata tctcatcact ggtctgtcag aaacaagtgc ctgagctaaa
5751 atcatcaagc tatccatatc agggtgtttt attagttttt ccagctgtga
5801 ccagagatct tgatgagagt tcttcaatgt tctggaacac acttgaaccc
5851 acttggggct ggtcatcaat ttcttcctta ttagtttaat cgcctccaga
5901 atatctagaa gtctgtcatt gactaacatt aacatttgtc caacaactat
5951 tcccgcattt cttagcctta caattgcatc atcatgcgtt ttgaaaagat
6001 cacaaagtaa attgagtaaa actaagtcca gaaacagtaa agtgtttctc
6051 ctggtgttga aaacttttag acctttcact ttgttacaca cggaaagggc
6101 ttgaagataa cacctctcta cagcatcaat agatatagaa ttctcatctg
6151 actggctttc catgttgact tcatctattg gatgcaatgc gatagagtag
6201 actacatcca tcaacttgtt tgcacaaaaa gggcagctgg gcacatcact
6251 gtctttgtgg cttcctaata agatcaagtc atttataagc ttagactttt
6301 gtgaaaattt gaatttcccc aactgcttgt caaaaatctc cttcttaaac
6351 caaaacctta actttatgag ttcttctctt atgacagatt ctctaatgtc
6401 tcctctaacc ccaacaaaga gggattcatt taacctctca tcataaccca
6451 aagaattctt tttcaagcat tcgatgtttt ctaatcccaa gctctggttt
6501 tttgtgttgg acaaactatg gatcaatcgc tggtattctt gttcttcaat
6551 attaatctct tgcataaatt ttgatttctt taggatgtcg atcagcaacc
6601 accgaactct ttcaacaacc caatcagcaa ggaatctatt gctgtagcta
6651 gatctgccat caactacagg aaccaacgta atccctgccc ttagtaggtc
6701 ggactttagg tttaagagct ttgacatgtc actcttccat tttctctcaa
6751 actcatcagg attgacccta acaaaggttt ccaataggat gagtgttttc
6801 cctgtgagtt tgaaaccatc cggaatgact tttggaaggg tgggacatag
6851 tatgccatgg tcagacagga tcacatcaac aaacttctga tctgaattga
6901 tctgacaggc gtgtgcctca caggactcaa gctctactaa acttgacaga
6951 agtttgaacc cttccaacaa cagagagctg gggtgatgtt gagataaaaa
7001 gatgtccctt tggtatgcta gctcctgtct ttctggaaaa tgctttctaa
7051 taaggctttt tatttcattt actgattcct ccatgctcaa gtgccgccta
7101 ggatccactg tgcg