Sequence of DPV Junin virus
Junin virus strain XJ13 segment S, complete sequence.
ACC No: AY358023
Dated: 2003-08-29 | Length: 3411 | CRC: 1499036334
!!NA_SEQUENCE 1.0
ID AY358023 standard; genomic RNA; VRL; 3411 BP.
XX
AC AY358023;
XX
SV AY358023.2
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 29-AUG-2003 (Rel. 77, Last updated, Version 2)
XX
DE Junin virus strain XJ13 segment S, complete sequence.
XX
KW .
XX
OS Junin virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3411
RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H.,
RA Smith K.L., McCready P.M., Chain P.S.G.;
RT ;
RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East
RL Avenue, Livermore, CA 94550, USA
XX
CC On Aug 27, 2003 this sequence version replaced gi:33868612.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3411
FT /db_xref="taxon:11619"
FT /mol_type="genomic RNA"
FT /note="small segment"
FT /organism="Junin virus"
FT /strain="XJ13"
FT /segment="S"
FT primer_bind 1. .20
FT gene 87. .1544
FT /gene="GPC"
FT CDS 87. .1544
FT /codon_start=1
FT /gene="GPC"
FT /product="glycoprotein precursor"
FT /protein_id="AAQ55251.1"
FT /translation="MGQFISFMQEIPTFLQEALNIALVAVSLIAIIKGIVNLYKSGLFQ
FT FFVFLALAGRSCTEEAFKIGLHTEFQTVSFSMVGLFSNNPHDLPLLCTLNKSHLYIKGG
FT NASFQISFDDIAVLLPQYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWHLDPPFL
FT CRNRTKTEGFIFQVNTSKTGVNENYAKKFKTGMHHLYREYPDSCPNGKLCLMKAQPTSW
FT PLQCPLDHVNTLHFLTRGKNIQLPRRSLKAFFSWSLTDSSGKDTPGGYCLEEWMLVAAK
FT MKCFGNTAVAKCNLNHDSEFCDMLRLFDYNKNAIKTLNDETKKQVNLMGQTINALISDN
FT LLMKNKIRELMSVPYCNYTKFWYVNHTLSGQHSLPRCWLIKNNSYLNISDFRNDWILES
FT DFLISEMLSKEYSDRQGKTPLTLVDICFWSTVFFTASLFLHLVGIPTHRHIRGEACPLP
FT HRLNSLGGCRCGKYPNLKKPTVWRRGH"
FT mat_peptide 87. .827
FT /gene="GPC"
FT /product="glycoprotein G1"
FT mat_peptide 828. .1541
FT /gene="GPC"
FT /product="glycoprotein G2"
FT stem_loop 1562. .1590
FT /note="hairpin loop structure"
FT stem_loop 1593. .1630
FT /note="hairpin loop structure"
FT gene complement(1636. .3330)
FT /gene="N"
FT CDS complement(1636. .3330)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AAQ55252.1"
FT /translation="MAHSKEVPSFRWTQSLRRGLSQFTQTVKSDVLKDAKLIADSIDFN
FT QVAQVQRALRKTKKGEEDLNKLRDLNKEVDRLMSMRSVQRNTVFKVGDLGRDELMELAS
FT DLEKLKNKIRRAETGSQGVYMGNLSQSQLAKRSEILRTLGFQQQGTGGNGVVRIWDVKD
FT PSKLNNQFGSVPALTIACMTVQGGETMNSVIQALTSLGLLYTVKYPNLSDLDRLTQEHD
FT CLQIVTKDESSINISGYNFSLSAAVKAGASILDGGNMLETIRVTPENFSSLIKSTIQVK
FT RREGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQITGRSWDNTSIDLTRKPVAG
FT PRQPEKNGQNLRLANLTEIQEAVIREAVGKLDPTNTLWLDIEGPATDPVEMALFQPAGK
FT QYIHCFRKPHDEKGFKNGSRHSHGILMKDIEDAMPGVLSYVIGLLPPDMVVTTQGSDDI
FT RKLFDLHGRRDLKLVDVKLTSEQARQFDQQVWEKYGHLCKYHNGVVVNKKKREKDTPFK
FT LASSEPHCALLDCIMFQSVLDGKLYEEEPTPLLPPSLLFLPKAAYAL"
FT primer_bind complement(3393. .3411)
XX
SQ Sequence 3411 BP; 901 A; 789 C; 713 G; 1008 T; 0 other;
AY358023 Length: 3411 December 5, 2003 15:01 Type: N Check: 1424 ..
1 gcgcacagtg gatcctaggc gattttggtt acgctataat tgtaactgtt
51 ttctgtttgg acaacatcaa aaacatccat tgcacaatgg ggcagttcat
101 tagcttcatg caagaaatac caaccttttt gcaggaggct ctgaacattg
151 ctcttgttgc agtcagtctc attgccatca ttaagggtat agtgaacttg
201 tacaaaagtg gtttattcca attctttgta ttcctagcgc ttgcaggaag
251 atcctgcaca gaagaagctt tcaaaatcgg actgcacact gagttccaga
301 ctgtgtcctt ctcaatggtg ggtctctttt ccaacaatcc acatgaccta
351 cctttgttgt gtaccttaaa caagagccat ctttacatta aggggggcaa
401 tgcttcattt cagatcagct ttgatgatat tgcagtattg ttgccacagt
451 atgatgttat aatacaacat ccagcagata tgagctggtg ttccaaaagt
501 gatgatcaaa tttggttgtc tcagtggttc atgaatgctg tgggacatga
551 ttggcatcta gacccaccat ttctgtgtag gaaccgtaca aagacagaag
601 gcttcatctt tcaagtcaac acctccaaga ctggtgttaa tgaaaattat
651 gctaagaagt ttaagactgg catgcatcat ttatatagag aatatcctga
701 ctcttgcccg aatggcaaac tgtgcttaat gaaggcacaa cctaccagtt
751 ggcctctcca atgtccactc gaccacgtta acacattaca cttccttaca
801 agaggtaaaa acattcaact tccaaggagg tccttgaaag cattcttctc
851 ctggtctttg acagactcat ccggcaagga tacccctgga ggctattgtc
901 tagaagagtg gatgctcgta gcagccaaaa tgaagtgttt tggcaatact
951 gctgtagcaa aatgcaattt gaatcatgac tctgaattct gtgacatgtt
1001 gaggcttttt gattacaaca aaaatgctat caaaacccta aatgatgaaa
1051 ctaagaaaca agtaaatctg atggggcaga caatcaatgc cctgatatct
1101 gacaatttat tgatgaaaaa caaaattagg gaactgatga gtgtccctta
1151 ctgcaattac acaaaatttt ggtatgtcaa ccacacactt tcaggacaac
1201 actcattacc aaggtgctgg ttaataaaaa acaacagcta tttgaacatc
1251 tctgacttcc gtaatgactg gatattagaa agtgacttct taatttctga
1301 aatgctaagc aaagagtatt cggacaggca gggtaaaact cctttgactt
1351 tagttgacat ctgtttttgg agcacagtat tcttcacagc gtcactcttc
1401 cttcacttgg tgggtatacc cacccacaga cacatcaggg gcgaagcatg
1451 ccctttgcca cacaggttga acagcttggg tggttgcaga tgtggtaagt
1501 accccaatct aaagaaacca acagtttggc gtagaggaca ctaagacctc
1551 ctgagggtcc ccaccagccc gggcactgcc cgggctggtg tggcccccca
1601 gtccgcggcc tggccgcgga ctggggaggc actgcttaca gtgcataggc
1651 tgccttcggg aggaacagca agctcggtgg taatagaggt gtaggttcct
1701 cctcatagag cttcccatct agcactgact gaaacattat gcagtctagc
1751 agagcacagt gtggttcact ggaggccaac ttgaagggag tatccttttc
1801 cctctttttc ttattgacaa ccactccatt gtgatatttg cataagtgac
1851 catatttctc ccagacctgt tgatcaaact gcctggcttg ttcagatgtg
1901 agcttaacat caaccagttt aagatctctt cttccatgga ggtcaaacaa
1951 cttcctgatg tcatcggatc cttgagtagt cacaaccatg tctggaggca
2001 gcaagccgat cacgtaacta agaactcctg gcattgcatc ttctatgtcc
2051 ttcattaaga tgccgtgaga gtgtctgcta ccatttttaa accctttctc
2101 atcatgtggt tttctgaagc agtgaatgta ctgcttacct gcaggttgga
2151 ataatgccat ctcaacaggg tcagtggctg gtccttcaat gtcgagccaa
2201 agggtgttgg tggggtcgag tttccccact gcctctctga tgacagcttc
2251 ttgtatctct gtcaagttag ccaatctcaa attctgaccg tttttttccg
2301 gctgtctagg accagcaact ggtttccttg tcagatcaat acttgtgttg
2351 tcccatgacc tgcctgtgat ttgtgatcta gaaccaatat aaggccaacc
2401 atcgccagaa agacaaagtt tgtacaaaag gttttcataa ggatttctat
2451 tgcctggttt ctcatcaata aacatgcctt ctcttcgttt aacctgaatg
2501 gttgatttta tgagggaaga gaagttttct ggggtgactc tgattgtttc
2551 caacatgttt ccaccatcaa gaatagatgc tccagccttt actgcagctg
2601 aaagactgaa gttgtaacca gaaatattga tggagctttc atctttagtc
2651 acaatctgaa ggcagtcatg ttcctgagtc agtctgtcaa ggtcacttaa
2701 gtttggatac ttcacagtgt atagaagccc aagtgaggtt aaagcttgta
2751 tgacactgtt cattgtctca cctccttgaa cagtcatgca tgcaattgtc
2801 aatgcaggaa cagagccaaa ctgattgttt agctttgaag ggtctttaac
2851 atcccatatc ctcaccacac catttccccc agtcccttgc tgttgaaatc
2901 ccagtgttct caatatctct gatcttttag caagttgtga ctgggacaag
2951 ttacccatgt aaaccccctg agagcctgtc tctgctcttc ttatcttgtt
3001 ttttaatttc tcaaggtcag acgccaactc catcagttca tccctcccca
3051 gatctcccac cttgaaaact gtgtttcgtt gaacactcct catggacatg
3101 agtctgtcaa cctctttatt caggtccctc aacttattga ggtcttcttc
3151 ccccttttta gtctttctga gtgcccgctg cacctgtgcc acttggttga
3201 agtcgatgct gtcagcaatt agcttggcgt ccttcaaaac atctgacttg
3251 acagtctgag tgaattggct caaacctctc cttaaggact gagtccatct
3301 aaagcttgga acctccttgg agtgtgccat gccagaagtt ctggtgattt
3351 tgatctagaa tagagttgct cagtgaaagt gttagacact atgcctagga
3401 tccactgtgc g