Sequence of DPV Sabia virus
Sabia virus strain SPH114202 segment L, complete sequence.
ACC No: AY358026
Dated: 2003-08-29 | Length: 7133 | CRC: 1614126434
!!NA_SEQUENCE 1.0
ID AY358026 standard; genomic RNA; VRL; 7133 BP.
XX
AC AY358026;
XX
SV AY358026.2
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 29-AUG-2003 (Rel. 77, Last updated, Version 2)
XX
DE Sabia virus strain SPH114202 segment L, complete sequence.
XX
KW .
XX
OS Sabia virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7133
RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H.,
RA Smith K.L., McCready P.M., Chain P.S.G.;
RT ;
RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East
RL Avenue, Livermore, CA 94550, USA
XX
CC On Aug 27, 2003 this sequence version replaced gi:33868626.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7133
FT /db_xref="taxon:45709"
FT /mol_type="genomic RNA"
FT /note="large segment"
FT /organism="Sabia virus"
FT /strain="SPH114202"
FT /segment="L"
FT primer_bind 1. .20
FT CDS 75. .377
FT /codon_start=1
FT /note="zinc finger protein"
FT /product="Z protein"
FT /protein_id="AAQ55262.1"
FT /translation="MGNSKSKSKLSANQYEQQTVNSTKQVAILKRQAEPSLYGRHNCRC
FT CWFANTNLIKCSDHYICLKCLNIMLGKSSFCDICGEELPTSIVVPIEPSAPPPED"
FT misc_feature 385. .436
FT /note="hairpin intergenic region"
FT CDS complement(448. .7086)
FT /codon_start=1
FT /note="L polymerase"
FT /product="L protein"
FT /protein_id="AAQ55263.1"
FT /translation="MQDPLLGTLSELKDLVRKTIPDVIELAYQKDALLSQVHPRSVLIE
FT GFKLLSLLVELESCKVNACHHNYEQKFIDVILSDGGILCPTLPKVVPDGYNLMGKTLIL
FT LETFVRVNPDDFEKKWKADMSKLISLKTDLGKIGVTLVPVVDGRSNYNTSFVSDWTTER
FT LRWLLIEVLKGMKTTSELEIEEQEYHRLIHSLAKTNNQSLGFENLECLKRNMLSYDQLL
FT DSSLLVGVKNDVKESKVMEELIRLKIWYKSEVYEKGLGKFVKTDKKVLLSQLITLGSHE
FT ENDSLDCAFCSSRILELCFKLSVKMHEDVLTRGLNLDGTKTLHSSVQSYLNVLSMCNKI
FT KGSKIFNTRRNTLLFLDLIMLNFVVDEMVKDSTVIRNLKNAGLIVGQMILLVNDRVLDI
FT LTANKLIRQKLTTNEKWLSICSSVLKRYDLELWEKLCYLIRVPDFNELFQLAKELVSDR
FT PMMRYSVHKAEERQCCHKAMENFTDDDFKIMLKALSHLSLGLINSMKTSFSSRLLINER
FT DYSRYFGNVRLRECYIQRFPITNNIIGLLFYQKTGERSRCYSLYIAENGELTEIGSFYC
FT DPKRYFVPIFSEAVITSMCEEMINWLNFDSELVRIVSTQLKTLMLLLLCSPSKRNQTFL
FT QGLRYFIMAYVNQAHHIDLMSKLAVECKSSSEIQLQRLCVRLFVSILSGDNEIEYGFTR
FT RFKFLLNISYLCHFITKETPDRLTDQIKCFEKFLEPKLKFNSVIVNPSLNGTLTESQEH
FT QMISSIDRFFSKELLDQSDVKEPGVSRELLGYCVSLFNRGKLRVSGDLKVDPFRPTFTS
FT TALDISSNKSVVVPKLDELGNIVDKYNKQLMVSSCVTSLVEMFKTKGRYNLDPDSIDFL
FT VLKNLTNLVSANVPQEKSQEELSTLYEALTEDQISAFEQVRDEVQLALHKMKSSDAREE
FT RLQDPKRNEKNASKGKILESLWSPHQVNRAIKNETSIHEIKDFDPDILDSHLVEKLCHE
FT VYNSSQKSLFFLDEPLKSVPLEMLLINLTTIAYEEEEFFECFKYLLIQGDFDQKLGTYE
FT HKSRSRLGLSSEALKVQENARVSTRESNAEAIAKKLDRTFFTSAALRNLCFYSEDSPTE
FT FTSVSTNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEVVTGSMRFSCLNS
FT EKEFERAICDMKMAVNNGDFSLSMDHSKWGPHMSPALFFTFLANLNLTEPKSRTRLNLD
FT PLLNILKWHLHKTVEVPFNVAQAYCIGKLKRSLGLMECQCSSLTEEFYHSYLQIQDEIP
FT SHIMSVLDMGQGILHNLSDLYALITEQFLNYVIHKLFDIDVTSYTSSDDQISIMKLPLS
FT TKENDEDFDWLEIICFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFV
FT AAALHNVKCKTPTQLAETIDTICDQCVANGVGVDIVSRISERVNRLISYSGYKETPFLT
FT IVNQDVKDWTDGSRGYRLQRNIENSFGNQELLRLIRRGARKVFLEIKKGHVFEENLIGL
FT IGRGGDEALRGFLLYAGFAENDIVEALRHKWLNPSTFGDLRLVLRTKIMSSKRILERES
FT VPSLIKTLQSRMSKNFIKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGG
FT FMYLKELYNNVNKCGCCICLEWPGVVYCQDSLAKISQFARSILWDYFTLVLTNACEIGE
FT WVFSDVKSPSAPPILSNPNLFWAVKPKIQKHIEDRLSLNHILHSIKRNYPYLFEEHLAP
FT FMSDLQFNQMMNPSHVKFLDVCIALDMMNENLGIIGHLLRGRNHFIYIVKQSECASAHI
FT RQSDYVDHELGLSPQQVCYNFKVQFLFSSMIDPLIVSTSTLKTFFWFNEVLSIEEEDQI
FT DLGELTDFTLFIKTGHLNRAMTADDITMGYVCSNLAEEIITLNSYGSFQEFRSNHPSKN
FT DLSDILKTLTSESIKLTLDIQIVHMRNSTKYNISRKIVYTLKALCALPLEDCFTKDPVA
FT LVESLELFASGVNGGHLQLDGVTMVSVLPLLRGKKAVNLAQILMDNDLAATNDHNVMES
FT VTLDFTKFHDELGDKFCYSLVGPEDQGNPIVLHNGMFMIDNQKLSYLKVEIFGDTIIKA
FT LGALDSPREIGSLLHGLWPYLKATKQIINFDQTDFEMIYDLHRVVLLESIAQFGDWVEF
FT ASFKVAFSKHYKDIVVADNLGNLRLKGVTCRLFRQQQSVEDIE"
FT primer_bind complement(7115. .7133)
XX
SQ Sequence 7133 BP; 2156 A; 1541 C; 1185 G; 2251 T; 0 other;
AY358026 Length: 7133 September 9, 2003 10:39 Type: N Check: 1348 ..
1 gcgcacagtg gatcctaggc attgctttca cgctttgagg tgaaccacct
51 cactggagca ccagatttca tctaatgggt aactccaagt caaaatcaaa
101 gctgtctgct aaccagtatg aacagcaaac agtcaatagc accaaacagg
151 tagccatttt aaagagacag gctgaaccta gtctgtatgg aagacacaac
201 tgcaggtgct gctggttcgc caatacaaat ctaataaaat gttccgacca
251 ttatatttgt ctaaaatgtt tgaacataat gttggggaag tcttcttttt
301 gtgacatttg tggtgaagag ctccccacat ccattgtggt gcccatcgaa
351 ccaagtgctc cacctccaga agactaaatc gtgtccgggt acacccccgg
401 ggggccccac aggggccccc cgcggggagt ccccggggtg gtgtggttta
451 ctcaatgtct tcaacggact gctgctgtct aaatagtctg caggtaacac
501 ccttgagcct taagtttcct agattatcag caacaacaat gtctttgtaa
551 tgtttgctga atgcaacctt aaaactggca aattcaaccc aatctccaaa
601 ctgagcaatt gattccaaca aaacaactct gtgaagatca taaatcattt
651 caaagtctgt ttgatcaaaa ttaatgattt gcttggtagc cttcagataa
701 ggccagagcc catgtagaag actcccaatc tccctggggc tgtccagtgc
751 cccaagtgcc ttaattatgg tgtcaccaaa aatctccacc tttaagtaag
801 acaacttctg attatcaatc ataaacatgc cgttgtggag gacaattgga
851 ttgccctggt cctcaggacc aactaatgag tagcagaatt tgtcacctag
901 ttcatcatga aatttggtga aatcaagtgt tacagattcc atcacattgt
951 gatcattggt cgcagctaaa tcgttatcca ttagaatctg agctaaattc
1001 actgccttct tccctctcag caaaggcaaa actgaaacca tggttacacc
1051 atccaactgc aggtgtcctc catttacacc agaagcaaac aactccaagg
1101 attccaccaa agccactggg tctttagtga agcagtcctc aagtggtaga
1151 gcacagagtg ccttaagagt ataaacaatc ttcctactaa tgttgtactt
1201 agtagaattt ctcatatgga caatttgtat gtctaatgtg agttttattg
1251 attcactagt gagagtcttt aagatgtctg ataaatcatt cttggatgga
1301 tgatttgatc tgaattcttg gaatgatcca taggaattca gtgtgattat
1351 ttcttctgcg aggttggaac acacataacc cattgttatg tcatcagctg
1401 tcatggccct attcagatgc cctgttttta taaacaatgt gaagtcagtc
1451 aattctccca aatctatctg atcttcttcc tctatactta aaacctcatt
1501 aaaccagaaa aatgtcttta atgttgacgt agaaactatg aggggatcaa
1551 tcatcgaaga aaacaaaaat tgaactttaa aattgtagca aacttgctga
1601 ggacttaaac caagctcatg gtccacatag tcagattgcc ttatgtgtgc
1651 agaagcacac tcactctgtt taactatgta tatgaaatga tttctaccac
1701 gcaaaagatg acctattatg cctagattct cattcatcat atccaatgct
1751 atacatacat ccaggaattt gacatgtgat gggttcatca tctgattgaa
1801 ttgcaaatca ctcataaacg gtgctagatg ttcttcaaat aaatagggat
1851 agttcctttt aatagagtgt aaaatatgat ttagacttag tctatcttca
1901 atatgttttt gaatcttggg cttgacagcc caaaagagat ttggattact
1951 taaaatagga ggtgcagaag gagatttcac atcagagaaa acccattctc
2001 cgatttcaca tgcgttagtg agaactaatg tgaagtaatc ccataaaata
2051 gatcttgcaa attgtgaaat ttttgctaga gaatcctgac agtaaacaac
2101 acctggccat tccaaacata tacagcatcc acacttattc acattattgt
2151 acaattcttt cagatacata aaacctcctt tgccgtctct cacacattta
2201 ctacccatac ttttacagaa ccctatgaaa cctgaggcca cagatgactg
2251 aaatgctgac ttatttattg attctgctaa aatctttttt gcccccttta
2301 taaagttctt tgacattctg gattgtagtg tctttatcag acttggtaca
2351 ctttctcttt ccaagattct tttactagac ataatttttg tccttaaaac
2401 cagtctcaaa tctccaaaag tggacggatt caaccattta tgccttaaag
2451 cctcaacaat gtcattttca gcaaatcctg catacaataa aaaccctctt
2501 aaagcttcat caccccccct gccaatcaaa ccaatcaaat tttcttcaaa
2551 cacatgaccc ttctttattt ccaaaaatac ttttcttgcc cccctcctta
2601 tcaaacgaag cagttcctga ttgccaaaag aattctctat atttctctgg
2651 agacgataac ccctcgatcc atctgtccaa tctttgacat cttggttgac
2701 aatggtcagg aaaggcgtct ctttatagcc agaatagcta atcaatcgat
2751 tcaccctctc tgatattctt gagacaatat ccactcctac accattggcc
2801 acacactgat cacaaatggt atcaatagtc tctgctaatt gagttggtgt
2851 tttacacttc acattatgta atgctgcggc cacaaacttg gtcaacaagg
2901 gagtttcctc acccattaca aaaaatctcg atttgaactc agcaacaaaa
2951 ttccccacca cactctttgg acttacaaat ttgttcaatt ttgaagatag
3001 gtactcatgg aaacagatga tttccaacca gtcaaaatct tcatcatttt
3051 cttttgtact cagtggcaat ttcatgattg aaatttggtc atcactagat
3101 gtgtaagaag tgacatcaat atcaaacagt ttgtgtatta cataattaag
3151 gaattgttca gttattaatg catacaagtc tgacaaattg tgtaggatgc
3201 cttggcccat gtcaagtaca gacattatat gacttgggat ttcatcttga
3251 atctgaaggt agctatgata aaattcctct gtgagacttg aacactgaca
3301 ttccatcaac ccaagacttc ttttaagctt ccctatacag taagcctgtg
3351 caacattaaa aggaacctct actgttttgt gtaagtgcca cttcagtata
3401 ttaagtaaag gatcaaggtt cagccttgtt ctactcttgg gctcagtaag
3451 attcaaattg gctaaaaatg taaaaaacag agcagggctc atgtggggtc
3501 cccactttga gtggtccatg gaaagactaa agtcaccatt gtttactgcc
3551 attttcatat cacaaattgc cctttcaaat tccttctcag aattcaaaca
3601 agagaacctc attgatcctg tgaccacttc tgagaaatcc tctaccaatc
3651 tagtcataag cttagtgtta agatctccca cataaagctc cctgttagac
3701 ccaacctgtt ctttataact taacccaaat ttcagattgc cagtgttggt
3751 gcttacacta gtgaattcag ttggggaatc ttctgagtaa aagcaaagat
3801 ttcgtaaagc tgcacttgta aagaaagttc tatcaagttt ttttgctatt
3851 gcctcagcat tgctttctct tgtgctaact cttgcattct cttgtacctt
3901 aagtgcctct gaactcagcc ctaatcttga tctactcttg tgttcatatg
3951 tacctagctt ttgatcaaag tctccttgta ttaataggta cttaaaacac
4001 tcaaagaact cttcctcttc ataggctatg gtagttaaat tgatcaacaa
4051 catttccaat ggaacagatt ttaacggttc atcaaggaaa aacagtgact
4101 tttgtgatga attatacacc tcatgacaaa gtttttcaac aagatgacta
4151 tctaaaatgt caggatcaaa atctttaatt tcatggattg aggtctcatt
4201 ttttatggct ctgtttacct gatgaggtga ccaaagagat tccagtatct
4251 tcccttttga tgcattcttc tcatttcttt ttggatcctg caacctttct
4301 tctctagcat ctgaactttt cattttgtgt aatgctaact gtacttcatc
4351 cctcacctgt tcgaatgcag aaatttggtc ctcagtcagt gcttcataca
4401 atgttgacaa ttcttcttga gacttttctt gaggtacatt tgcacttacc
4451 aagtttgtga ggttttttaa cacaaggaaa tcaatagaat caggatctaa
4501 attgtaccta cctttggtct taaacatttc tacaagtgat gtgacacatg
4551 atgataccat taactgttta ttatatttat ctacaatatt tccaagttca
4601 tctaattttg ggacaacaac acttttattg ctcgagatgt ctaaagcagt
4651 acttgtgaaa gtaggacgaa agggatctac tttcaaatcc cctgacactc
4701 tcaatttgcc tctattgaac aatgaaacac agtatccaag tagttctcta
4751 gagacaccag gctccttcac atcagattga tcaagcaact ctttggaaaa
4801 gaatctatca atactagaaa tcatttggtg ctcctgagat tctgtcaagg
4851 ttccgttcaa tgacggattc acaatgacac tattaaattt caatttgggt
4901 tccaagaatt tctcaaaaca tttaatttga tctgttagcc tatctggagt
4951 ttcttttgta ataaagtggc aaaggtaact aatgttcagt agaaacttga
5001 atcttcttgt gaacccatat tctatctcat tgtcaccaga taaaatcgaa
5051 acaaacaatc tgacacataa tctttgcaat tggatttctg agctagactt
5101 acactcaact gccaacttag acataaggtc aatgtggtgt gcttggttga
5151 catatgccat tataaaatac ctcaaacctt gaaggaatgt ctgatttctc
5201 ttcgaaggag aacagagcag tagtaacatg agtgttttta attgagtgga
5251 tactattctc accaactctg aatcaaagtt caaccagttg atcatttctt
5301 cacacattga tgtgatcaca gcttcagaaa aaataggcac aaagtatctt
5351 ttaggatcac agtaaaaaga tccgatctca gtcaactcac cattttctgc
5401 aatataaagt gagtaacatc tagatctttc tcctgtcttt tggtaaaaca
5451 gtaaacctat tatgttgttt gtgataggga atcgttggat ataacattcc
5501 ctaagtctca cattaccaaa atatcgtgaa taatctctct cattaataag
5551 taaccgagag gaaaatgatg tcttcattga attgatcaag cctaatgaaa
5601 gatgagacaa ggcctttaac attatcttga agtcatcgtc agtgaagttc
5651 tccattgctt tatggcaaca ttgtcgttcc tctgctttgt gaacagaata
5701 cctcatcata ggcctgtctg agactaactc ctttgcgagt tggaaaagtt
5751 cattaaagtc aggaactctt attaaataac acagcttttc ccagagctct
5801 aaatcatacc ttttaagaac actgctacaa attgaaagcc acttttcatt
5851 ggtggtcagt ttttgcctga tcaacttatt agcagtgagg atgtccaaca
5901 cccgatcatt gacaagtaat atcatttgtc caactattaa tcctgcattc
5951 tttaggttcc tgataactgt gctatctttt accatctcat caacaacgaa
6001 gttcaacatg attaagtcta aaaacaatag tgtgttcctc ctggtattaa
6051 agatctttga acctttaatc ttattgcaca tggacaacac attcaggtaa
6101 gattgcactg atgagtgtaa agttttagtc ccatcaaggt tcagccccct
6151 tgtgagcaca tcctcatgca tcttgactga taatttgaaa cacaactcca
6201 aaattctaga ggaacaaaag gcacagtcta ggctatcatt ctcctcatgg
6251 gagcctaatg tgattaactg agacagcagg acctttttgt ctgttttcac
6301 aaactttccc aaacctttct cataaacttc acttttgtac caaattttca
6351 atcttataag ctcctccatc acttttgatt ctttcacatc attcttaact
6401 ccaactaaca atgaggaatc cagcaactga tcataggata acatattcct
6451 cttgagacat tcaagatttt caaaaccaag gctttgattg ttggtcttgg
6501 ccaaactatg gattaatcta tgatattctt gttcttcaat ttctagttct
6551 gaagtagtct tcataccttt caacacctct attaacaacc acctcaacct
6601 ttctgtggtc caatcagaca cgaagctggt attgtaattg ctgcggccat
6651 ctacaacggg gactaatgta acacctatct tgcctaggtc tgtttttaga
6701 gagattaatt tgctcatatc agccttccat ttcttttcaa agtcgtctgg
6751 atttactcta acaaaagtct ccaacaagat gagagtcttt cccatcaggt
6801 tgtaaccatc tggcaccacc ttaggcagag ttggacagag aatgccacca
6851 tcggaaagaa tcacatctat aaatttttgt tcgtaattat gatggcatgc
6901 atttacctta caggactcca actccaccaa caaagataaa agtttaaacc
6951 cctcaattaa cactgatctt ggatgcactt gtgaaagtaa tgcgtccttt
7001 tgatatgcaa gctcaattac atctggtatg gtttttctaa ccaaatcctt
7051 taattcagac agggttccta agagggggtc ttgcatgact gccagaagtt
7101 taagttacgg ttctgcctag gatccactgt gcg