Sequence of DPV Strawberry necrotic shock virus

Strawberry necrotic shock virus coat protein gene, complete cds.

ACC No: AY363236

Dated: 2004-10-10 | Length: 669 | CRC: 989308287

                !!NA_SEQUENCE 1.0
ID   AY363236   standard; genomic RNA; VRL; 669 BP.
XX
AC   AY363236;
XX
SV   AY363236.1
XX
DT   18-SEP-2003 (Rel. 77, Created)
DT   10-OCT-2004 (Rel. 81, Last updated, Version 2)
XX
DE   Strawberry necrotic shock virus coat protein gene, complete cds.
XX
KW   .
XX
OS   Strawberry necrotic shock virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Ilarvirus.
XX
RN   [1]
RP   1-669
RA   Tzanetakis I.E., Mackey I.C., Martin R.R.;
RT   "Strawberry necrotic shock virus is a distinct virus and not a strain of
RT   Tobacco streak virus";
RL   Arch. Virol. 149(10):2001-2011(2004).
XX
RN   [2]
RP   1-669
RA   Tzanetakis I.E., McKey I.C., Martin R.R.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Botany and Plant Pathology, Oregon State University and USDA/ARS - HCRL,
RL   3420 Orchard Ave, Corvallis, OR 97330, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .669
FT                   /country="USA:California"
FT                   /db_xref="taxon:243563"
FT                   /mol_type="genomic RNA"
FT                   /organism="Strawberry necrotic shock virus"
FT                   /isolate="G 980"
FT                   /specific_host="Fragaria x ananassa (NCGR 9034)"
FT   CDS             1. .669
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6URJ4"
FT                   /note="CP"
FT                   /product="coat protein"
FT                   /protein_id="AAQ76584.1"
FT                   /translation="MSVNRGKNVLNNNSNGCPTCFDKLDAAASNCARCMRNGGVTNRQR
FT                   RNARRAANFRNQRPVPVVPVSAPTTSKSLKLPGNQVWVTRKPSDWAAKTVDTNDAITLK
FT                   TIFNGIPEINDDTKIFRVLIGFVAVSDGTFGLVDEVVGDSIPDPPIIGRLGFKKNTYRS
FT                   RDFRFDGKLTTQVANKAIVWCLDANRRDAKRVRLADFWVAISRPNPLMPPDEFLSGDSD
FT                   "
XX
SQ   Sequence 669 BP; 164 A; 142 C; 172 G; 191 T; 0 other;

 AY363236  Length: 669  October 12, 2004 08:59  Type: N  Check: 260  ..

       1  atgtctgtta acagggggaa gaatgttttg aataacaact ccaatggttg
      51  cccaacttgt tttgacaagt tggatgccgc tgcgtctaat tgcgcgaggt
     101  gtatgcgcaa tggtggtgtt actaaccgcc agcgtcgtaa tgccaggagg
     151  gccgctaact ttcgtaatca gaggcccgta cctgttgttc cagtttcggc
     201  tcctaccact tcaaaatctt tgaagttacc tggtaaccag gtatgggtca
     251  ctcggaaacc gagtgattgg gctgcaaaaa ctgttgatac caacgatgcg
     301  atcacgttga agaccatttt taatggtatt cccgaaatca atgatgacac
     351  gaagattttc cgtgtcttaa ttggtttcgt tgccgtgtcc gatgggacat
     401  ttggtttggt cgacgaagtc gttggagatt cgatccctga tccaccaatt
     451  ataggtcggt tgggatttaa aaagaatact tatcgcagcc gcgacttccg
     501  ttttgacggg aaacttacaa cacaagttgc taataaagca attgtgtggt
     551  gcctcgatgc taatcgtcga gatgccaagc gggtcagatt ggcagacttt
     601  tgggtcgcca tatcacgacc taatccgctg atgcctccag atgagtttct
     651  gtctggggat agtgattga