Sequence of DPV Pirital virus
Pirital virus segment L, complete sequence.
ACC No: AY494081
Dated: 2004-04-28 | Length: 7089 | CRC: -1469986375
!!NA_SEQUENCE 1.0
ID AY494081 standard; genomic RNA; VRL; 7089 BP.
XX
AC AY494081;
XX
SV AY494081.1
XX
DT 28-APR-2004 (Rel. 79, Created)
DT 28-APR-2004 (Rel. 79, Last updated, Version 1)
XX
DE Pirital virus segment L, complete sequence.
XX
KW .
XX
OS Pirital virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7089
RX PUBMED; 15084402.
RA Cajimat M.N.B., Fulhorst C.F.;
RT "Phylogeny of the Venezuelan arenaviruses";
RL Virus Res. 102(2):199-206(2004).
XX
RN [2]
RP 1-7089
RA Cajimat M.N.B., Fulhorst C.F.;
RT ;
RL Submitted (02-DEC-2003) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7089
FT /country="Venezuela"
FT /db_xref="taxon:49891"
FT /mol_type="genomic RNA"
FT /organism="Pirital virus"
FT /strain="VAV-488"
FT /specific_host="Sigmodon alstoni"
FT /segment="L"
FT primer_bind 1. .19
FT CDS 64. .351
FT /codon_start=1
FT /note="zinc-binding; contains RING-finger motif"
FT /product="Z protein"
FT /protein_id="AAS72553.1"
FT /translation="MGLRYSKEVRERHGDKDLEGRVPMTLNLPQGLYGRFNCKSCWFAN
FT RGLIACSDHYLCLNCLTRLRSQSQFCGICGKPLPTKIRFEESPSAPPYEP"
FT CDS complement(427. .7059)
FT /codon_start=1
FT /note="RNA-dependent RNA polymerase"
FT /product="L protein"
FT /protein_id="AAS72554.1"
FT /translation="MEEHVNELHDLVRKWVSDDENFAEQKAIFLSQTKLRAITIEGLKL
FT LSTIVEVDSCQKNSCIHNREKTLNSILRDNKIVCPTLPEIVPDGYRLIGDVLILLEVFV
FT RSNQESFEKKYEQDYTKLMQVKKDLQSHGITLVPMIDGRSSYYVEFMPDWVVEKIRWHL
FT IKLMDLLKEDGESVEELEYERLVSSLSALENQSLGLESLLSIKERGIEYIDRLTKIMYG
FT NLNNNMSVDECKGEILRIYQNFRQLFDQGQFKPKYRKTDREFILKTLREHGLIKCAIMS
FT EEDSCKNCMIHMFKVLTIIKQSFVSNKNIESSFILKEYNQLLSVCNKVKSLKVLNTRRG
FT TLMVLDLIMLNKLLSLIKIYGIKAALTILRMQCIPAVNDRLLSIDFLISIYERKMIKSP
FT KWLEKVHGKLKRVVQDCMFKALEDYLVEIDFDTWFSIKDELLMTQQFKPSICYRSSKGC
FT VCNAETLKNLSMMTEEDFLSYLKILSSLSLSLVNSMKTSSAPKSKINQANDFYGIVHCE
FT EVYFQGFGDNNACTLLYQKTGEKSRCYSVAFSDNEQQIDYGSKISFYADPKRFFLPIMS
FT QDVLNRMCNEMLSWLDFLSDDNIKVVADLLRKLILCVLCTPSKRVQVYLQGFRYLIMAY
FT VNEIHCNDLFAKLEVDALTASERQVMIWMDDLTRIVLEMSKEADMAKSFKFILNLSYLC
FT HLITKETPDRLTDQIKCFEKFLEPKLKFGSLMVNPDSTPELTSEQEDQVCEGLHRLLNK
FT KIFSKCENIPGVSKELVSLCSSLFNSSNLEVKPLLNHDPLTPSFTSTALDLSSNKSVVV
FT PKLNEIGETLTEYDFGKIVSSVVVDLTEHFKTKGKYKLDPRDLRFRIFKKLSSLVEVNP
FT TKKSNRKSESGEVVAPDESFMDELTEEQQLMLSEIEVKVSKTFEGMSKDELNRKQSKEK
FT GAEAHLKRLWSKEVRDKISSETSLHEVKDFDVQLFPFDTYEELVTIVFNDKSAHDFYFL
FT EKYLNPCPLDMLMKNLTLKAFNEGDFFECFKYILIASEFDNKIGRYDHKIRTRLGLKDP
FT ALKIREEARISTRESNSESIAKRLDKSFFTNSSLRNLCFYSDESPTTRTGVATDVGKLK
FT FGLSYKEQVGGNRELYVGDLNTKLITRLVEDYAESICSNMKYTCLNSESEFERALLDMK
FT SVVRQGGFAVSMDHSKWGPHMSPAIFAQLLRCLKFRLKDGSEIDKKAVLNILYWHLHKI
FT VEVPFNVVQAFMSGFVKRGLGLMDRGGATLSEEFMFGFFEKGVVPSHLSSVVDMGQGIL
FT HNMSDLYGLITEQFINYVLDFCYNVSMTSYTSSDDEIMLSTSSALNHEDGSLNVDVALE
FT ILEFHNFLSDKLNKFVSPKTVAGTFASEFKSRFFIWSQEVPLLTKFVAAALHNIKAKAP
FT NQLAETVDTILDQCVANGVSIEIVGAISKRTNSLVCYSGHPLNPFLCLEESDVRDWVDG
FT SRGYRLQRSIENIFPDDLCPNLIRDACRKVFHRIQSGKIEEEFLVASIQGSPDECLNSM
FT LTIADVDEDIKKDLAGYRWLNLRAYGDLRLVLRTKLMSSTRTLQREEIPSLVRSVQSKL
FT SKNFVRGAKRILTDAINKSAFQSCISSGFIGVCKSMGSKCVRDNTGGFVYIKEITKHVM
FT PHTTSYCPYCKPSKNIYCEDALRSVSEYSRPIFWDYFSLVLSNACELGNWVFGAPILPK
FT TVFHLDNPNHFWPIKPSSQTELEDKVGMNHVLYSIRRNYPSIFDEHISPYMSDLNMLRL
FT SWVQKIKFLDLCVALDMSSECLGIISHIMRRKREELYIVKQQELSMSHTRESTNLESGL
FT SLEPQEVCKNFLLQVLFDSMVNPVLLTTSQFRKYFWYGEVLQLPNDASHHLAQFTQFIL
FT DCKQLNSSRAMTLDDLDVGYVTSRVKRTTTFVALSTFITSLDWENRHEYKSFQELILSS
FT PCDVFKFEFSMTFSHIRSSHKFRYERCTSYILKVHVVFDKRVLNSNMLEDQSLLITPHS
FT VEYFVSQSGGNHISLDGVGLLPLDPLISGKEVLNIDDVLRHEDVNFSAESPLFSKMRFD
FT FKPFLKELKNKFSYKLIGPDIIMEPLVLDKGQIKEGSRIVSQLKLRLDFKAVFVALGCL
FT EEESRSTFISNLFMYIGSLRGEEHRISMTESNLVQLIDNYPQVFDSMLDATNDWLNCGS
FT FSLCKSKSLGCVMIADERGPFKLKGVNCRRLLPDSQAVEID"
FT primer_bind complement(7071. .7089)
XX
SQ Sequence 7089 BP; 2093 A; 1575 C; 1188 G; 2233 T; 0 other;
AY494081 Length: 7089 May 5, 2004 12:52 Type: N Check: 9850 ..
1 cgcacagtgg atcctaggct tttttggatc acgcttaccc ctgttcagga
51 taacactgaa aacatgggtc tacgctacag caaagaggtg agagagagac
101 acggagacaa agatctggaa gggagagtcc ccatgacact caatctccca
151 cagggtttat atggacgctt caactgtaag tcttgctggt ttgcaaacag
201 aggtctcata gcctgctcag atcactatct gtgcctgaat tgcttgacta
251 gactcaggtc tcagtctcaa ttctgtggaa tctgcggcaa gcctctgcca
301 acaaaaatca gatttgagga gagcccatct gctccaccat acgaacccta
351 actgcccacc gggccccggc gcacccccca aagggggtgc gcccggggcc
401 ccccgggccc gggggcccgt atgaaactag tcaatctcga cagcttggga
451 gtccgggagc aatcttctgc agttcactcc ttttagttta aaggggcccc
501 tctcatctgc aatcatgaca caaccaagtg atttgctttt gcacaatgaa
551 aatgatccac aattcaacca gtcatttgtg gcatccaaca tcgagtcaaa
601 cacttgagga tagttgtcta ttaattgaac taggttggat tcagtcatgg
651 atatacgatg ctcttctcct ctaagtgatc ctatatacat aaacagattt
701 gatataaatg ttgaccttga ctcttcctcc agacatccca aggccacgaa
751 aactgcttta aagtccaatc tcaatttcaa ttgagaaaca attcgtgacc
801 cttctttgat ttgaccttta tctagaacta gaggttccat gatgatatct
851 ggtccaatta atttgtaaga gaatttgttc tttaattcct tcaagaaagg
901 tttgaaatca aacctcatct tcgagaacag tggactttca gcagagaaat
951 ttacatcttc atgtctgaga acatcatcta tatttaaaac ctcttttcca
1001 ctgataagtg gatctagagg taagagaccc acaccatcca ggctaatgtg
1051 gttgccacct gattgtgaaa caaagtattc aacagagtgt ggtgtaatca
1101 gaagtgactg gtcctcaagc atatttgagt tcagtactcg tttatcgaac
1151 actacatgta ccttgagaat gtaactagtg cacctctcat atctgaactt
1201 gtgactggat ctaatatgac taaaagtcat gctgaactca aacttaaaaa
1251 catcgcatgg tgacgataga attagctctt ggaatgattt atactcatgc
1301 ctgttttccc aatctaatga tgtgatgaaa gtagacaatg cgacaaaagt
1351 agttgtcctc ttaactctac tggtcacgta acctacatcc aagtcatcta
1401 atgtcatagc cctgcttgaa ttcaactgct tacagtcaag aataaattgt
1451 gtaaactgag caagatgatg agaagcatca ttcgggagct gtaaaacttc
1501 tccataccag aagtactttc taaactgact agtggtaaga agaactggat
1551 ttaccatgga atcaaacaac acttgtaaga ggaagttctt acacacttct
1601 tgaggttcaa gacttaaacc actctctaag tttgtacttt cccttgtatg
1651 ggacatggat agctcttgct gcttgacaat ataaagctcc tctctcttcc
1701 tcctcatgat atgagatata atacccaaac attctgaaga catatctaat
1751 gccacacaca aatccaaaaa ctttatcttt tgaacccaac tcaatcttaa
1801 catgtttaaa tcagacatat aaggactgat gtgctcatca aagatactag
1851 gatagtttct tctgatcgaa tataggacat gattcattcc gactttatct
1901 tccaactctg tctgactgga gggttttatc ggccagaagt ggtttggatt
1951 gtccagatgg aagactgtct ttggtaaaat tggtgcaccg aatacccaat
2001 tccctaactc acaagcattg gacaagacta atgaaaaata atcccagaag
2051 ataggtcttg aatactctga aacacttcgc agtgcatcct cacagtaaat
2101 gttttttgag ggtttgcagt atgggcaata agaggttgtg tgcggcatta
2151 catgctttgt aatttcttta atatatacaa atcctccagt attatctctc
2201 acacactttg accccatact tttgcaaacg ccaataaacc cagacgatat
2251 gcaactttga aatgccgact tattgatggc atctgtcagt attcttttgg
2301 ctcctcttac aaagttcttt gataattttg attgaactga tctcacgagg
2351 cttggtatct cctccctttg cagggttctg gtcgatgaca tcaattttgt
2401 cctcaagacc agtctaagat caccatatgc cctgaggttg agccaccggt
2451 aaccagcaag gtctttttta atgtcctcat caacatctgc tattgttaac
2501 attgaattta aacattcatc aggggaacct tgtatggatg caacaaggaa
2551 ttcttcttca atcttcccag actgaattct atgaaacacc tttctacagg
2601 catccctaat aagattagga cacaagtcat cagggaagat attttcgatt
2651 gacctttgta atctataacc tcttgaacca tcaacccagt ctctcacatc
2701 actctcctct agacacaaga atggattcaa tgggtgccca gaataacaga
2751 ctagagaatt tgtgcgcttg gatattgcac caacaatttc tattgacacc
2801 ccattcgcca cacattgatc caaaattgta tccactgtct cagccagctg
2851 gtttggtgct ttggctttta tgttatgaag agcagcggca acaaattttg
2901 ttagtaaggg aacttcctgt gaccaaataa agaaccttga cttgaattca
2951 ctggcaaaag taccagctac tgttttagga ctgacgaatt tattcaactt
3001 atctgaaaga aaattatgga attccaagat ttccaatgcc acatcaacat
3051 tcaaagaacc atcttcatga ttcaaggctg acgaggttga taacatgatc
3101 tcatcatcac tagaggtata tgatgtcatt gagacattat agcagaaatc
3151 tagtacatag tttatgaatt gctctgtgat aagaccgtat aagtcagaca
3201 tattgtgtag tattccttgt cccatatcaa ccacagatga aaggtgtgaa
3251 ggtacaactc ccttttcaaa aaacccaaac ataaattcct ctgatagtgt
3301 tgctccacct ctatccatga gtcccaatcc tctcttaaca aatccactca
3351 taaaagcctg tacaacattg aaaggaactt ccacaatttt atgaagatgc
3401 caatataata tgtttagtac tgctttctta tctatctctg agccatcttt
3451 caatcgaaat ttcaaacacc tcaaaagttg tgcaaaaatg gcaggactca
3501 tgtgaggccc ccattttgaa tgatccatgc tcaccgcgaa tccaccctgc
3551 ctgacaacag atttcatatc aaggagcgcc ctctcaaact cagattcact
3601 attcagacat gtgtatttca tgttcgagca tattgattct gcataatcct
3651 ctactaatct ggtgatcaac ttggtgttta agtcacccac atacaactcc
3701 ctgtttcccc ccacttgctc tttataagac aacccaaatt taagttttcc
3751 aacatcagtt gccaccccag tcctcgttgt aggtgattca tcagagtaga
3801 agcaaagatt ccttagggat gaatttgtaa agaaactttt atccaacctt
3851 ttggctatgg attctgagtt actttccctt gtactaatgc gggcttcttc
3901 tctaatcttc aaagcaggat ctttgagccc taatctggtt cttattttat
3951 gatcatatct cccgattttg ttgtcaaatt cacttgcaat tagaatgtac
4001 ttaaaacatt caaaaaagtc accttcatta aaagccttaa gtgtaaggtt
4051 tttcattaac atgtctagcg gacaagggtt taagtacttc tctagaaagt
4101 agaagtcatg ggcagactta tcattgaaga caattgtaac tagttcctca
4151 taagtatcaa aagggaacaa ctgaacatca aaatccttca cctcatgaag
4201 tgaagtttct gatgaaatct tgtctctcac ttccttgctc caaagcctct
4251 tcaaatgtgc ttcagctccc ttttctttac tttgctttct attcagctca
4301 tccttggaca tcccctcaaa tgtctttgag acttttacct caatctcact
4351 caacatcaac tgctgttctt ctgtgagctc gtccataaaa gattcatcag
4401 gggccacaac ctcaccagac tcgctctttc tattgctttt ctttgttggg
4451 ttcacctcta ccagtgagct caacttctta aaaattctaa atctaaggtc
4501 tctaggatct aatttatatt ttcctttagt cttaaaatgc tctgtcaagt
4551 ccaccacaac acttgagaca attttcccaa agtcatattc agtaagggtt
4601 tcaccaatct cattcaactt tggcacaact acacttttgt tgctggacaa
4651 atctaatgca gtgctagtga aagatggggt taatggatca tggttcagta
4701 ggggcttcac ctcaagattt gaactattaa agagagagga gcacaatgat
4751 actagttctt ttgaaacacc cggtatgttc tcacattttg agaaaatctt
4801 tttattaagt agtctatgta aaccctcaca aacttggtcc tcttgctcac
4851 ttgtcaactc tggtgtagag tcagggttaa ccatcaagct gccaaattta
4901 agcttgggct ccagaaactt ctcaaaacac ttgatttggt ctgtgagcct
4951 atcaggggtt tcttttgtaa ttagatgaca taggtaagac aaattcaaaa
5001 tgaatttgaa tgactttgcc atatcagctt ccttagacat ctctaagaca
5051 atcctggtta agtcgtccat ccaaatcatc acttgcctct ctgaagccgt
5101 caatgcatcc acttccaact ttgcaaagag gtcattacaa tgaatctcat
5151 ttacataagc cattataaga tatctaaagc cttggaggta tacttggacc
5201 ctttttgatg gagtgcataa gacacacaaa atcaattttc tgaggaggtc
5251 tgcaacaacc ttgatattgt catcactcaa aaagtcaagc catgacaaca
5301 tctcattgca catcctattt agaacatctt gggacatgat tggtaaaaag
5351 aacctctttg ggtcagcata aaatgaaatc ttgctgccat aatcaatctg
5401 ttgctcattg tcagaaaatg ctacactgta acatcttgat ttttctccag
5451 ttttctgata taaaagtgtg caagcattgt tatcgccaaa tccctgaaag
5501 taaacttctt cacagtggac aattccataa aaatcattgg cttgatttat
5551 ttttgattta ggtgcacttg aggtcttcat agagttcact aatgataagc
5601 taagacttga taaaatcttc aagtatgaca agaagtcttc ttcagtcatc
5651 atgcttaagt tcttaagagt ttctgcatta cacacacaac ccttactact
5701 tctataacag atgcttggtt tgaattgctg ggtcattaaa agttcatcct
5751 ttatactaaa ccatgtgtca aaatcaatct caaccaaata atcttccaat
5801 gctttaaaca tacagtcctg aactactctc ttcagtttcc catgaacctt
5851 ttccagccat ttgggacttt taatcatttt cctctcatat atgctaatca
5901 gaaagtcaat tgacaacagt ctatcattga cagcggggat acattgcatt
5951 ctcaggatag tcagtgcagc tttgattcca taaatcttaa tcaaacttaa
6001 gagtttattt aacattatta aatctaaaac catcaaagtc ccccttcttg
6051 tgttcagtac cttcaaactc ttaaccttat tgcaaactga caacaattgg
6101 ttgtattctt ttaatatgaa gctgctttct atgttcttgt tgctcacaaa
6151 agattgcttg attattgtca aaactttgaa catgtgaatc atgcagtttt
6201 tgcaagagtc ttcttcactc atgattgcac atttgatcaa accatgttct
6251 cttaatgtct ttagtatgaa ctctctatcc gttttcctat attttggttt
6301 gaattgaccc tgatcaaaaa gttgtctaaa attctgatag atcctcaata
6351 tttccccttt gcactcatca actgacatat tattattcaa attcccatac
6401 attattttgg tgagtctgtc tatatactca attccccttt ccttaattga
6451 taatagggat tcaagtccga gactttgatt ttccaaggca gaaagactag
6501 atacaagcct ctcatattct agctcttcaa ccgattcacc atcttctttt
6551 agcaaatcca ttaattttat tagatgccat ctaatttttt ctaccaccca
6601 gtctggcatg aactcaacat aataggatga cctaccatca atcataggaa
6651 caagtgtgat gccatgtgac tgtaagtctt tctttacttg cataagtttt
6701 gtgtagtctt gttcatactt cttttcaaaa gactcctggt tagagcgcac
6751 aaacacctct agtagtataa gtacatctcc aatcaaccta taaccatctg
6801 gaacaatttc tggtaatgtc ggacaaacta ttttgttgtc tctgagtatt
6851 gagttcaatg ttttctctct attatgaatg catgagttct tttgacatga
6901 gtcaacctct acaattgtgg acaacaattt tagtccttca attgttatag
6951 ccctcaattt tgtctgggac agaaaaattg ctttctgctc cgcaaagttt
7001 tcatcatcag acacccattt cctgacaagg tcgtgcaatt cgttaacgtg
7051 ttcctccatg ttcaaggaaa gcgtaggatc cactgtgcg