Sequence of DPV Tomato leaf curl Mali virus
Tomato leaf curl Mali virus, complete genome.
ACC No: AY502936
Dated: 2008-03-26 | Length: 2773 | CRC: 2076993809
ID AY502936; SV 1; circular; genomic DNA; STD; VRL; 2773 BP.
XX
AC AY502936;
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DT 15-JAN-2004 (Rel. 78, Created)
DT 26-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE Tomato leaf curl Mali virus, complete genome.
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KW .
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OS Tomato leaf curl Mali virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2773
RA Zhou Y.C., Noussourou M., Kon T., Rojas M.R., Jiang H., Chen L.F.,
RA Gamby K., Foster R., Gilbertson R.L.;
RT "Evidence of local evolution of tomato-infecting begomovirus species in
RT West Africa: characterization of tomato leaf curl Mali virus and tomato
RT yellow leaf crumple virus from Mali";
RL Arch. Virol. 153(4):693-706(2008).
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RN [2]
RP 1-2773
RA Zhou Y., Jiang H., Chen L., Gilbertson R.L.;
RT "Characterization of tomato-infecting begomoviruses (genus begomovirus,
RT family geminiviridae) from Mali, Africa";
RL Unpublished.
XX
RN [3]
RP 1-2773
RA Zhou Y., Jiang H., Chen L., Gilbertson R.L.;
RT ;
RL Submitted (15-DEC-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology Department, UC-Davis, One Shields Avenue, Davis, CA 95616,
RL USA
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FH Key Location/Qualifiers
FH
FT source 1. .2773
FT /organism="Tomato leaf curl Mali virus"
FT /mol_type="genomic DNA"
FT /country="Mali"
FT /db_xref="taxon:260379"
FT gene 138. .488
FT /gene="V1"
FT CDS 138. .488
FT /codon_start=1
FT /gene="V1"
FT /product="pre-coat protein"
FT /db_xref="GOA:Q6RCU4"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q6RCU4"
FT /protein_id="AAR89447.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAIEETYEPNTLGYDLIRDL
FT ISVVRASNYVEATRRYIHFHSRLEGSSKTELRQPILQPCCCPHCPRHKQASTMDVPAHV
FT PKAQVLQNVQKS"
FT gene 298. .1074
FT /gene="V2"
FT CDS 298. .1074
FT /codon_start=1
FT /gene="V2"
FT /product="coat protein"
FT /db_xref="GOA:Q6RCU3"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q6RCU3"
FT /protein_id="AAR89448.1"
FT /translation="MLKRPADIFISTPASKVRRKLNFDSPYSSRAVVPTVRGTSKRQLW
FT TYRPMYRKPKFYKMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCVSDITRGPGLTH
FT RTGKRFCIKSMYILGKIWMDENIKKTNHTNNVMFYLVRDRRPYGKSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVLRKFHATVTGGPSGVKEQALVKRFYRLNSHVVYNHQEEAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1071. .1475)
FT /gene="C3"
FT CDS complement(1071. .1475)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q6RCU2"
FT /protein_id="AAR89449.1"
FT /translation="MDLRTGEHITALQAQSGVFIWELNNPLYFKIIKHISRPFNRNHDM
FT ISDQIRFNHNLRKELGIHKCYLNFQIWTTLRPQTGHFLRVFKTQIIKYLDNLNVISINN
FT IIRAVNHVLYNILENIIDVSENHEIKFNIY"
FT gene complement(1216. .1623)
FT /gene="C2"
FT CDS complement(1216. .1623)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /db_xref="GOA:Q6RCU1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q6RCU1"
FT /protein_id="AAR89450.1"
FT /translation="MRPSSPSQSHCSPTPIKVLHKQAKKKPIRRRRVDLNCGCSYYLHI
FT NCTNHGFTHRGTHHCSSSSEWRVYLGAQQSPIFQDNKTHQPTIQQEPRHDIRPNQVQPQ
FT PQERVGDSQVLSELPDLDDLTASDWSFLKGL"
FT gene complement(1532. .2611)
FT /gene="C1"
FT CDS complement(1532. .2611)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein C1"
FT /db_xref="GOA:Q6RCU0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q6RCU0"
FT /protein_id="AAR89451.1"
FT /translation="MPRAGRFSIKAKNYFLTYPQCSLTKKEALSQLQNLQTPTNKKFIK
FT ICRELHEDGEHHLHVLIQFEGKYNCTNQRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAGSTEAALAIIKEKLPKDYIFQYH
FT NLKSNLDRIFQEPPEVYVSPFSSSSFTQVPDELEEWVADNIRDSAARPWRPKSIVLEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKELMGAQRDW
FT QSNTKYGKPVQIKGGIPSIFLCNPGATSSYKEFLDEEKNRALKAWAVKNATFVTLTEPL
FT FSNANQGSPQTSQEETDQA"
FT gene complement(2197. .2454)
FT /gene="C4"
FT CDS complement(2197. .2454)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q6RCT9"
FT /protein_id="AAR89452.1"
FT /translation="MGNIISTCLSNSRVNTTAQINDSSTWYPQPGQHISIRMYRELNPA
FT PTSSPISIRTETLSNGENSKLTADLLEEAAKQLTTQPPRH"
XX
SQ Sequence 2773 BP; 754 A; 533 C; 630 G; 856 T; 0 other;
ay502936 Length: 2773 26-MAR-2008 Type: N Check: 4078 ..
1 acaggatggc cgcgcccgaa aaagaaagtg gtccctcctc actaatttat
51 gtcggccaat cagaatgtca gtgaaaacgt tagataagta gtgttttgtc
101 ttatatactt tggtcccaag tatgttacag ttgcactatg tgggatccat
151 tattgaatga attccctgaa tcagtacatg ggtttcgatg tatgctggcc
201 ataaaatatt tgcaggccat agaggaaaca tacgagccca atacattggg
251 ttacgattta attcgtgatc tcatatcagt agttagggcc tccaactatg
301 ttgaagcgac ccgccgatat attcatttcc actcccgcct cgaaggttcg
351 tcgaaaactg aacttcgaca gcccatactc cagccgtgct gttgtcccca
401 ctgtccgagg cacaagcaag cgtcaactat ggacgtaccg gcccatgtac
451 cgaaagccca agttttacaa aatgtacaga agtcctgatg taccacgggg
501 atgtgaaggt ccatgtaaga tccagtcgta tgagcaaagg gatgacgtga
551 agcataccgg tattgtacgt tgtgttagtg atataactcg tggtcctggt
601 ttgactcata gaacagggaa gagattctgt atcaagtcca tgtatatatt
651 gggtaagatt tggatggatg agaacattaa gaagacgaat cacactaaca
701 atgtcatgtt ctacttggtc cgtgatagaa ggccctatgg aaaaagccca
751 atggattttg gacaggtttt caatatgttt gacaatgagc ccagtactgc
801 cactgtgaag aatgatctcc gtgatagata tcaagtactt aggaagtttc
851 atgctaccgt tacgggtgga ccctctggag tgaaggaaca ggcattagtg
901 aaaagatttt ataggcttaa tagtcatgta gtgtataacc atcaggaaga
951 ggctaaatat gagaatcata cagagaatgc gttgttattg tatatggcat
1001 gtactcatgc ttctaaccca gtgtatgcta cccttaaaat acgcatctat
1051 ttctatgatg cagttacgaa ttaataaata ttaaatttta tttcatgatt
1101 ttctgataca tcaataatgt tttcaagaat attgtacaat acatggttga
1151 ctgccctaat gatattatta atagaaatta cattcaaatt atctaaatat
1201 ttaattattt gggtcttaaa gacccttaag aaatgaccag tctgaggccg
1251 taaggtcgtc cagatctgga agttcagata acacttgtga atccccaact
1301 ctttcctgag gttgtggttg aacctgattt ggtctgatat catgtcgtgg
1351 ttcctgttga atggtcggct gatgtgtttt attatcttga aatatagggg
1401 attgttgagc tcccagataa acacgccact ctgagcttga agagcagtga
1451 tgtgttcccc tgtgcgtaaa tccatggttg gtgcagttaa tgtgtagata
1501 gtatgagcac ccgcagttga ggtctactcg tctacgcctg atcggtttct
1551 tcttggcttg tttgtggaga accttgattg gcgttggaga acaatggctc
1601 tgtgagggtg acgaaggtcg cattttttac tgcccaagcc ttcagtgctc
1651 tgtttttttc ctcgtctaga aattccttat atgatgaagt tgcccctgga
1701 ttgcagagga aaatactggg aatgccccct ttaatttgaa ctggctttcc
1751 gtattttgtg ttgctttgcc agtctctttg ggcccccatc agctctttaa
1801 aatgctttaa ataatgtggg tcgacatcat caatgacgtt ataccatgcg
1851 ttattggagt acacctttgg gcttaagtct aggtgcccac ataaataatt
1901 atgtggaccc agagaacggg cccatacagt tttgccggtc cgactgtcac
1951 cctctaagac tatactcttg ggtctccatg gccgcgcagc ggaatctctt
2001 atattatctg ccacccactc ttcaagttcg tctggaactt gagtaaaaga
2051 agaagaagaa aaaggggata catatacttc aggaggttcc tggaagattc
2101 tatctaaatt ggattttaaa ttatgatatt gaaatatata atcttttggg
2151 agtttttctt taattatagc taaagcagct tcagttgaac ctgcatttaa
2201 tgcctcggcg gctgcgtcgt tagctgtttg gcagcctcct ctagcagatc
2251 tgccgtcaat ttggaattct ccccattcga gagtgtctcc gtccttatcg
2301 atataggact tgacgtcgga gctggattta gctccctgta cattcggatg
2351 gaaatgtgct gaccgggttg gggataccag gtcgaagaat cgttgatttg
2401 tgcagttgta tttaccctcg aattggataa gcacgtggag atgatgttcc
2451 ccatcttcgt ggagttctct acagatttta atgaattttt tatttgtggg
2501 agtctgtagg ttctgtaatt gagaaagtgc ctctttttta gtaagagagc
2551 attggggata agtgaggaag taattcttgg ctttaatact aaaacgaccg
2601 gctctaggca tagtgataaa tgaattgggg ggcactaaaa gtcatatgaa
2651 ttgggggaac tggggggcaa tttatatgtg ccccccaaat ggcataactg
2701 taatatcgta aacctttaag tctcattaga aatccaaatt ccatttaaat
2751 ctagcggcca tccttctaat att