Sequence of DPV Barley yellow dwarf virus-SGV
Barley yellow dwarf virus SGV-NY RNA-dependent RNA polymerase P1-P2 fusion protein and putative coat protein P3 genes, partial cds; and putative movement protein P4 gene, complete cds.
ACC No: AY541038
Dated: 2006-02-27 | Length: 1267 | CRC: -706239257
ID AY541038 standard; genomic RNA; VRL; 1267 BP.
XX
AC AY541038;
XX
SV AY541038.1
XX
DT 11-MAR-2004 (Rel. 79, Created)
DT 27-FEB-2006 (Rel. 86, Last updated, Version 3)
XX
DE Barley yellow dwarf virus SGV-NY RNA-dependent RNA polymerase P1-P2 fusion
DE protein and putative coat protein P3 genes, partial cds; and putative
DE movement protein P4 gene, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-1267
RX DOI; 10.1016/j.jviromet.2004.04.005.
RX PUBMED; 15234811.
RA Malmstrom C.M., Shu R.;
RT "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT cereal yellow dwarf viruses";
RL J. Virol. Methods 120(1):69-78(2004).
XX
RN [2]
RP 1-1267
RA Shu R., Malmstrom C.M.;
RT ;
RL Submitted (04-FEB-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Biology, Michigan State University, 166 Plant Biology MSU, East
RL Lansing, MI 48824, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .1267
FT /country="USA"
FT /db_xref="taxon:12037"
FT /mol_type="genomic RNA"
FT /organism="Barley yellow dwarf virus"
FT /isolate="SGV-NY"
FT CDS <1. .603
FT /codon_start=1
FT /db_xref="GOA:Q6QHJ5"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="UniProtKB/TrEMBL:Q6QHJ5"
FT /note="ORF2; low-abundance product derived from -1
FT ribosomal frameshift"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion
FT protein"
FT /protein_id="AAS55449.1"
FT /translation="PERENEHLFTGMYDHFLHYGFNMVTEQPVYELEKLEFCQSRPVRI
FT GGRYRMVRRPDCMGKDSTTLLSMLNESDVKSYMSAVAQCGLVLNAGVPILESFYKCLFR
FT SSGYKKVSEEYIQNVISYGTDERLQGRRTFEETPITTDNRMSYWESFGVDPKIQQIVER
FT YFDBLTVSAQLQSVKVTTPHLQSILLSIPENTYQHHY"
FT CDS 717. .>1267
FT /codon_start=1
FT /db_xref="GOA:Q6QHJ4"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q6QHJ4"
FT /note="ORF3; translated from subgenomic RNA1; occasional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /product="putative coat protein P3"
FT /protein_id="AAS55450.1"
FT /translation="MNSQGPRRNARKNVRRRNRTVRPVVVVQAPGTGRRRRNGRRPARR
FT RANHLPRPAGRSEVFTFSVNDIKGNSNGVIKFGPSLSQCPALSDGILKSYHDYAITNVQ
FT IFYRSHASSETEGALFIELDNSCTQSALASYINSFTITSSGSKTFTAGSINGTTMKNYL
FT SDQFYLLYKGNSSKATVAGQ"
FT CDS 754. .1194
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q6QHJ0"
FT /note="ORF4; translated via leaky scanning from subgenomic
FT RNA1"
FT /product="putative movement protein P4"
FT /protein_id="AAS55451.1"
FT /translation="MSEDAIEQFGQWLWSKPPEPGEDEEMVDVQQEDGQIIYRDQQAGL
FT RYSLFQSTTSKATPTGSSNSAPAFRNVLHYQTEYLSPTTTTRSQMSRYSIDRTPAPKLR
FT AHSLLNSTTRAHNQPWLATLTHSPSQVPDRRPSRRALLTGPR"
XX
SQ Sequence 1267 BP; 379 A; 300 C; 276 G; 308 T; 4 other;
ay541038 Length: 1267 27-FEB-2006 Type: N Check: 8902 ..
1 cctgagagag agaatgaaca cctcttcact ggaatgtatg accatttcct
51 acattacggt ttcaacatgg ttactgaaca accagtgtat gaattggaaa
101 aacttgaatt ctgccaatcc cgtccagtta ggataggggg tagatacaga
151 atggtcagac gaccagactg catggggaag gacagcacca cactactgag
201 catgctaaat gagtcagacg ttaaatcata tatgtctgcc gtggcgcagt
251 gtgggcttgt cttgaatgct ggtgtaccca tacttgaaag cttctacaag
301 tgtttattca gaagctctgg gtacaaaaaa gtgagtgagg aatacatcca
351 aaacgtcata tcttatggaa cagatgaaag gcttcaaggt agacgtacct
401 ttgaggaaac acctatcacc actgacaatc gcatgtcata ttgggaatca
451 tttggagttg atccgaagat acaacaaatt gtcgagcggt acttcgacra
501 tctaacggtt agtgcccaac tccaaagtgt gaaggtgact actccacatc
551 tgcaatcaat cctcctctca attcctgaga acacatacca gcatcattat
601 taattaccag atcttagccg ggtttggtat tgggtttata gttagtattc
651 cttgtacatt aactatcacc tatttcattt acaatmaagt tagcaacacc
701 acymgggaag tggtgaatga attctcaagg ccctaggcgc aacgcacgca
751 aaaatgtcag aagacgcaat cgaacagttc ggccagtggt tgtggtccaa
801 gcccccggaa ccgggcgaag acgaagaaat ggtcgacgtc cagcaagaag
851 acgggcaaat catttaccga gaccagcagg caggtctgag gtattcactt
901 tttcagtcaa cgacatcaaa ggcaactcca acggggtcat caaattcggc
951 cccagccttt cgcaatgtcc tgcattatca gacggaatac ttaagtccta
1001 ccacgactac gcgatcacaa atgtccagat attctataga tcgcacgcca
1051 gctccgaaac tgagggcgca ctctttattg aactcgacaa ctcgtgcaca
1101 caatcagcct tggctagcta cattaactca ttcaccatca caagttccgg
1151 atcgaagacc ttcacggcgg gctctattaa cgggaccacg atgaagaact
1201 atttgtctga ccagttttac ctcttataca aaggcaacag ttctaaggcc
1251 actgttgcag gtcagtg