Sequence of DPV Plum pox virus

Plum pox virus from Kazakhstan polyprotein gene, partial cds.

ACC No: AY591254

Dated: 2005-02-04 | Length: 1778 | CRC: -234132091

                !!NA_SEQUENCE 1.0
ID   AY591254   standard; genomic RNA; VRL; 1778 BP.
XX
AC   AY591254;
XX
SV   AY591254.1
XX
DT   27-MAY-2004 (Rel. 80, Created)
DT   04-FEB-2005 (Rel. 82, Last updated, Version 2)
XX
DE   Plum pox virus from Kazakhstan polyprotein gene, partial cds.
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1778
RA   Spiegel S., Kovalenko E.M., Varga A.M., James D.;
RT   "Detection and Partial Molecular Characterization of two Plum pox virus
RT   Isolates from Plum and Wild Apricot in South East Kazakhstan";
RL   Plant Dis. 88(9):973-979(2004).
XX
RN   [2]
RP   1-1778
RA   James D., Varga A.M., Spiegel S.;
RT   ;
RL   Submitted (06-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   Centre for Plant Health, Canadian Food Inspection Agency, 8801 East Saanich
RL   Road, Sidney, BC V8L1H3, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1778
FT                   /country="Kazakhstan:Zailiyski Alatou at the northern edge
FT                   of the Tien Shan mountains"
FT                   /db_xref="taxon:12211"
FT                   /mol_type="genomic RNA"
FT                   /organism="Plum pox virus"
FT                   /strain="D"
FT                   /specific_host="Prunus armeniaca (wild apricot)"
FT   CDS             <1. .1768
FT                   /codon_start=2
FT                   /db_xref="GOA:Q6J6C3"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProt/TrEMBL:Q6J6C3"
FT                   /product="polyprotein"
FT                   /protein_id="AAT29064.1"
FT                   /translation="INAVLNIRLAFMEEWDIGEQMLSNLSTEIVYTPIATPDGTIVKKF
FT                   KGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGDDLVLAVHPAYES
FT                   VYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVLYDDMYIPKLEPERVVSILEWDR
FT                   SNEPIHRLEAICASMVEAWGYKELLREIRKFYSWVLEQAPYNALSKDGKAPYIAETALK
FT                   KLYTDTETSETEIERYLEAFYNDINDDGESNVVVHQADEREDEEEVDAGKPIVVTAPAA
FT                   TSPIPQPPPVIQPAPRTTAPMFNPIFTPATTQPAIKPVSQVSGPQLQTFGTHGNEDASP
FT                   SNSNALVNTNRDRDIDAGSIGTFTVPRLKAMTSKLSLPKVKGEAIMNLNHLAHYSPAQV
FT                   DLSNTRAPQSCFQTWYEGVKRDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMVDG
FT                   ETQVEYPIKPLLDHAKPTFRQIMAHFSSVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLA
FT                   RYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDVN
FT                   RNMHNLLGVRGV"
FT   mat_peptide     776. .1765
FT                   /product="coat protein"
XX
SQ   Sequence 1778 BP; 548 A; 374 C; 422 G; 434 T; 0 other;

AY591254  Length: 1778  February 8, 2005 08:48  Type: N  Check: 5430  ..

       1  gatcaatgca gttctgaaca ttcgtctggc atttatggaa gaatgggaca
      51  ttggtgaaca aatgctttca aacctgtcca cggagattgt atatacacca
     101  attgctacac cagatggcac tattgttaag aagttcaagg gcaacaatag
     151  tggtcaacct tcgacagttg ttgacaacac actcatggtt attttggcaa
     201  tgacatattc actccttaag cttggatacc atccggatac acacgattgc
     251  atttgtcggt acttcgtgaa tggtgatgat cttgtccttg cagtgcaccc
     301  agcatacgag agcgtttatg atgagcttca agagcacttt tcccaacttg
     351  gtttgaatta cacattcgcc acaaagactg aaaacaagga agagttgtgg
     401  tttatgtcac ataaaggtgt tctctacgat gacatgtaca ttcccaagct
     451  ggagcctgag agggttgtat caatacttga atgggacaga tcaaatgagc
     501  caatccatcg attggaggca atttgtgctt caatggtgga agcgtggggt
     551  tataaggagc tgctgaggga gatccggaaa ttttacagtt gggttcttga
     601  acaagcacca tacaatgctc tttcaaaaga tggaaaagcc ccgtacattg
     651  cggagacagc actgaagaag ctttacactg acactgaaac gtctgagaca
     701  gaaattgagc gatatcttga agctttttac aacgacatta acgatgatgg
     751  tgagtccaac gttgttgtgc accaagctga cgaaagagaa gacgaggagg
     801  aagttgatgc aggcaagcca attgtagtta ctgcaccggc agcaactagc
     851  ccaatacctc aaccacctcc agtcatacag cctgcacccc ggactacggc
     901  gccaatgttc aaccccattt tcacgccagc aacaactcaa ccagcaataa
     951  aaccagtttc acaggtgtca ggacctcaac tgcaaacttt tggaacacat
    1001  ggtaatgagg atgcctcacc tagcaactca aacgcgctag ttaacacaaa
    1051  cagagatagg gacatcgatg caggatcaat tggaactttc acagtgccac
    1101  gtttgaaggc aatgacttcg aaactatctc tgccaaaggt gaagggagag
    1151  gccattatga acttgaacca tttggcacat tatagtcctg cacaggttga
    1201  cttgtcaaac acgagagctc cgcagtcttg tttccaaact tggtatgaag
    1251  gagttaagcg agattatgat gtcacggacg atgaaatgag catcatttta
    1301  aatggtctta tggtttggtg catagagaat ggaacatccc cgaatatcaa
    1351  tggaatgtgg gtgatggtgg atggggaaac acaagtggag tatccaataa
    1401  agccattgtt ggatcatgcg aaacccactt ttagacaaat tatggcacat
    1451  ttcagtagcg tggctgaagc gtatattgaa aaacgaaatt atgaaaaagc
    1501  atacatgcca aggtatggaa ttcagcgcaa cctgacagac tacagcctcg
    1551  ccagatatgc ctttgatttt tacgaaatga cttcaacgac acccgtacgg
    1601  gcacgtgaag ctcatatcca gatgaaggca gcagcattga gaaatgttca
    1651  aaatcgttta tttggcttgg atggaaacgt cggaacacaa gaagaggaca
    1701  cagagagaca caccgctggt gatgttaatc gcaacatgca caacctcctc
    1751  ggtgtgaggg gagtgtagtg gtctcggt