Sequence of DPV Strawberry vein banding virus
Strawberry vein banding virus isolate 9010.001 capsid protein gene, partial cds.
ACC No: AY605663
Dated: 2006-08-17 | Length: 1404 | CRC: -1060516733
ID AY605663; SV 1; linear; genomic DNA; STD; VRL; 1404 BP.
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AC AY605663;
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DT 27-AUG-2005 (Rel. 85, Created)
DT 17-AUG-2006 (Rel. 88, Last updated, Version 2)
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DE Strawberry vein banding virus isolate 9010.001 capsid protein gene, partial
DE cds.
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KW .
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OS Strawberry vein banding virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
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RN [1]
RP 1-1404
RA Hanzlikova Vaskova D., Spak J., Petrzik K.;
RT "Variability in sequence of Strawberry vein banding virus";
RL Biol. Plant. 50(4):660-666(2006).
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RN [2]
RP 1-1404
RA Hanzlikova Vaskova D., Spak J., Petrzik K.;
RT ;
RL Submitted (23-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Institute of Plant Molecular Biology, Branisovska 31, Ceske
RL Budejovice 370 05, Czech Republic
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FH Key Location/Qualifiers
FH
FT source 1. .1404
FT /organism="Strawberry vein banding virus"
FT /isolate="9010.001"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /note="obtained from the National Clonal Germplasm
FT Repository, Corvallis, Oregon, USA"
FT /db_xref="taxon:47903"
FT CDS 1. .>1404
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF IV"
FT /db_xref="GOA:Q3ZT27"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProtKB/TrEMBL:Q3ZT27"
FT /protein_id="AAU06127.1"
FT /translation="MVSRRERLEQLFDEDHPEMDTIIQYLSLLDHELDDCQEEKLQVLV
FT AKEMIDYSSSEDDEPTRNVKVNIKEEDEETYRPNRKRRGNSSSQPNYTRYDIPQEYVPN
FT RKTGLTNTKSLDLDCASNRRQLIEEWDNEMRLIIKTEKALTNDFDLILTLAKSKTVGNA
FT KQLLESLHTEAFKQASTTGEEFLTTLTNSFYTIFVGTNYLTQGTREKEKAVQEARNRLV
FT KLQICNLCSLESFFCDYETNLLKLPIEEWPKYIEEYIRKIPFVGMEVLEEYSKQDSITK
FT GSLGYAHNLIKAYMEKKCKSLKIKKEIRRNMCCPKFSSPETQYGCKPISHKKAKKKKYK
FT QYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEETSQQSPEEKKKFCPQGKTTCRC
FT WICNEIGHFAKDCRNKSANHNKIIEELQSLQLEPVFDLNELKIEEKFWELKEVSESSES
FT ESEISSDESS"
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SQ Sequence 1404 BP; 557 A; 259 C; 266 G; 322 T; 0 other;
ay605663 Length: 1404 17-AUG-2006 Type: N Check: 3794 ..
1 atggtaagca gaagagaaag actcgaacaa ctgttcgacg aagatcatcc
51 agaaatggat actattatac aatatctgtc tttacttgat catgaacttg
101 atgattgtca agaagagaag ttacaggtac ttgtagcaaa agagatgatt
151 gactacagca gcagcgaaga cgacgagcca actcgaaacg tcaaagtcaa
201 catcaaggaa gaggacgaag aaacctatcg tccgaaccga aagcgaagag
251 gaaacagctc ctctcagcca aattacacca ggtatgatat tccacaagaa
301 tacgttccta acagaaaaac aggtttgacc aacaccaaaa gcttggacct
351 cgattgcgcc agcaaccgaa gacaactcat tgaagaatgg gacaatgaaa
401 tgagattaat cattaaaaca gagaaagctc ttactaatga ttttgatcta
451 atcttaactc ttgcaaagag taagactgtt ggtaatgcca aacaattatt
501 agaatctctt cacactgaag cttttaaaca agcctctaca acaggagaag
551 aatttctaac aactctaaca aattcgtttt atactatatt tgttggaact
601 aactacttga cgcagggaac tcgagaaaaa gagaaagctg ttcaagaagc
651 tagaaacagg ttagtcaaat tacaaatttg caatctctgt tcactagaaa
701 gttttttctg tgactatgaa accaatcttc ttaaattacc aatagaagaa
751 tggcccaaat atattgaaga atatattagg aaaataccct ttgttgggat
801 ggaagtactc gaagagtatt ccaaacaaga cagcataact aaaggatcac
851 ttggatatgc tcacaatctc atcaaagcct acatggagaa aaagtgtaag
901 tctttgaaga tcaaaaagga aatacgtaga aatatgtgtt gtcctaagtt
951 ttcctcaccg gaaacacaat atgggtgcaa acccattagc cataaaaaag
1001 ctaagaaaaa gaagtacaaa cagtactata aaaagaagta tagacttaga
1051 aaacccaaaa ggtggactaa ctctagaaga aaatattctg gtagaaaact
1101 ttttcgcagg aaaagagacc agaaggaaga gacttcacag cagtctcccg
1151 aagaaaagaa gaagttctgc ccacaaggca aaacaacatg caggtgctgg
1201 atttgtaatg aaatcggaca ctttgcaaaa gattgcagga acaagtctgc
1251 aaatcacaac aagataattg aagaacttca aagtcttcaa ttagaacctg
1301 tctttgacct caacgagctc aagatagaag aaaaattctg ggaacttaaa
1351 gaagtctcag aaagctcaga atctgaatca gagatcagct cagatgaatc
1401 ctca