Sequence of DPV Freesia mosaic virus

Freesia mosaic virus isolate Spiranthes polyprotein gene, partial cds.

ACC No: AY685219

Dated: 2009-12-03 | Length: 1630 | CRC: -773906401

                
ID   AY685219; SV 1; linear; genomic RNA; STD; VRL; 1630 BP.
XX
AC   AY685219;
XX
DT   23-AUG-2004 (Rel. 80, Created)
DT   03-DEC-2009 (Rel. 103, Last updated, Version 2)
XX
DE   Freesia mosaic virus isolate Spiranthes polyprotein gene, partial cds.
XX
KW   .
XX
OS   Freesia mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1630
RA   Guaragna M.A., Ndum O., Jordan R.;
RT   "Detection and characterization of two previously undescribed potyviruses
RT   in the terrestrial orchid Spiranthes cernua";
RL   Acta Hortic. 722:209-218(2006).
XX
RN   [2]
RP   1-1630
RA   Jordan R.;
RT   ;
RL   Submitted (13-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS,
RL   10300 Baltimore Ave, Beltsville, MD 20705, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1630
FT                   /organism="Freesia mosaic virus"
FT                   /host="Spiranthes cernua 'Chadd's Ford'"
FT                   /isolate="Spiranthes"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:421012"
FT   CDS             <1. .1455
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q68KG7"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q68KG7"
FT                   /protein_id="AAT99071.1"
FT                   /translation="GQPSTVVDNTLMVILAMHYSMEKQGWKRNESKERLVFFANGDDLI
FT                   IAVKPGYEGILDSLAVSFKELGLIYDFSERCHDRQELWFMSHQGHLIDGMYIPKLERER
FT                   IVSILEWDRSHAIEHRAEAICAAMIEAWGYPDLLLEIRKFYAWILDHDMFHDLAAIGKL
FT                   PYIAETALRKLYTDRDCEDEELLHYLRAFNFEGELVGTDEVRYQATSTPEQLDAGAEAE
FT                   RRRKARSGETEQPIKGQEREIAKNSEKDVDVGSRASKSVPRLAKLKVRMKVPTTARGPV
FT                   LDLDHLLEYKPDQIDLSNARATKQQFDAWFNGVQNAYELDDIQMKILMNGLMVWCIENG
FT                   TSPDITGVWTMMDGDEQVEYPLRPVIENAKPTLRQVMRHFSDMAEAYIEMRNAEKPYMP
FT                   RYGLQRNLRDYSLARVAFDFYEITSKTSVRAREAHMQMKAAAVANTTAKMFGLDGNIGT
FT                   QEENTERHTVTDVSANMHSLLGVRHM"
FT   mat_peptide     <1. .621
FT                   /product="nuclear inclusion b protein"
FT                   /note="NIb; replicase"
FT   mat_peptide     622. .1452
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1456. .1630
XX
SQ   Sequence 1630 BP; 503 A; 291 C; 431 G; 405 T; 0 other;

ay685219 Length: 1630  03-DEC-2009  Type: N  Check: 5441  ..

       1  gggcagccat caacagttgt ggataacaca ctgatggtaa ttttggcaat
      51  gcattatagc atggagaagc aaggatggaa acgtaacgaa tcaaaggaac
     101  ggttggtctt ctttgcaaat ggtgatgact tgatcatagc agtgaaacct
     151  ggctacgagg ggattctaga ttctctagca gtatctttca aggagttagg
     201  tttgatatat gatttttcag agcgatgtca cgataggcag gaattatggt
     251  tcatgtcaca tcaaggacat ttaattgatg ggatgtatat tccaaaactt
     301  gagcgagagc ggattgtttc tatattggaa tgggatagaa gtcatgccat
     351  cgaacacaga gcagaggcaa tttgcgcagc tatgattgaa gcatgggggt
     401  accctgatct tcttttggaa atcagaaaat tttacgcatg gattcttgac
     451  cacgacatgt ttcacgattt ggcagcaata ggcaagttgc cgtatattgc
     501  tgagacagca ctgaggaaat tatacacaga tcgtgattgt gaagatgaag
     551  agctgttaca ttaccttaga gcttttaact ttgaaggaga gctggtggga
     601  acggacgagg tgcgatacca agcaaccagc acaccagagc aacttgacgc
     651  tggggctgag gctgagcgaa ggcgaaaagc aaggagtggg gagacagagc
     701  aaccaattaa aggacaggag cgcgaaattg caaagaatag cgaaaaggac
     751  gtggatgtgg gttcacgagc aagcaaatca gtgccaaggt tggcaaaatt
     801  gaaggttcga atgaaggttc caacaacagc aagaggtccc gtcttggatc
     851  tggatcatct tcttgagtac aaaccagatc aaattgatct atcgaacgca
     901  cgggcgacga agcaacaatt tgacgcctgg ttcaatggag tgcaaaatgc
     951  atatgagctg gacgacattc agatgaagat cttgatgaac ggcttaatgg
    1001  tctggtgcat tgagaatgga acctcaccag atatcacggg tgtgtggacg
    1051  atgatggacg gtgatgaaca agttgagtac ccactgcgac ccgtgattga
    1101  aaatgcaaag cctacgctga gacaagtcat gcgtcatttc tcagacatgg
    1151  ccgaggccta tatagaaatg aggaatgcag agaaacccta catgccacgg
    1201  tatggtttac agagaaatct gagagattat agcctagctc gggtcgcatt
    1251  cgatttttac gagattacat ctaaaacctc agttagagct agagaagcgc
    1301  acatgcagat gaaagctgca gccgtcgcaa acactacggc gaagatgttt
    1351  ggtcttgatg gtaatatcgg gacacaagag gaaaatactg aacgacatac
    1401  agtcactgat gtgagtgcta atatgcatag tctgttgggt gtacgtcaca
    1451  tgtaaagtgt ttggagtatt ttcatgctag tacttatata actatagacg
    1501  ctaagtttta agtgagtgtt tcactccgtg tggtaagata tatagtacta
    1551  gaaaacgaag gactacaact gtaggaggct cttgtgtggc tatgccacga
    1601  atgcgtctta cctttgtata cacctttaat