Sequence of DPV Carrot red leaf virus
Carrot red leaf virus strain UK-1, complete genome.
ACC No: AY695933
Dated: 2006-01-11 | Length: 5723 | CRC: 1835079358
ID AY695933 standard; genomic RNA; VRL; 5723 BP.
XX
AC AY695933;
XX
SV AY695933.1
XX
DT 28-AUG-2004 (Rel. 81, Created)
DT 11-JAN-2006 (Rel. 86, Last updated, Version 5)
XX
DE Carrot red leaf virus strain UK-1, complete genome.
XX
KW .
XX
OS Carrot red leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC unclassified Luteoviridae.
XX
RN [1]
RP 1-5723
RX DOI; 10.1007/s00705-005-0537-6.
RX PUBMED; 15883658.
RA Huang L., Naylor M., Pallett D.W., Reeves J., Cooper J.I., Wang H.;
RT "The complete genome sequence, organization and affinities of carrot red
RT leaf virus";
RL Arch. Virol. 150(9):1845-1855(2005).
XX
RN [2]
RP 1-5723
RA Huang L., Naylor M., Pallet D.W., Reeves J., Cooper J.I., Wang H.;
RT ;
RL Submitted (26-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology, Centre for Ecology and Hydrology, Mansfield Road, Oxford
RL OX1 3SR, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .5723
FT /db_xref="taxon:66200"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Carrot red leaf virus"
FT /strain="UK-1"
FT gene 29. .778
FT /gene="p0"
FT CDS 29. .778
FT /codon_start=1
FT /db_xref="GOA:Q670I6"
FT /db_xref="InterPro:IPR001525"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:Q670I6"
FT /note="ORF0"
FT /gene="p0"
FT /product="p0 protein"
FT /protein_id="AAU04779.1"
FT /translation="MLLITLKGTVSYYVPTDSSARLFAYKYFIHHVLALSFATLQLYNV
FT EPCFYGNLPRALLYILPCILNNDYKMGGSAIWCKPDYIRELVLWGLVCGFYPRIQNRGR
FT RGYRVNLQRLGNRRAYLSFLHRLDGRNLSENLLRRPEAFFTTVEDFSRTIGVFYQIRDR
FT ALAHSYRELPLDRCHDLVGSLFHDSETGVVTYNQLHSTCPCAGYSLLINDSDLPCSDLA
FT LFTAPYVPFNVSLGHDQIGHQVEIQEE"
FT gene 159. .3295
FT /gene="p2"
FT CDS join(159. .1529,1529. .3295)
FT /codon_start=1
FT /db_xref="GOA:Q670I5"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR001254"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q670I5"
FT /note="ORF1 and ORF2; translated by -1 frameshift"
FT /gene="p2"
FT /product="RNA-dependent RNA polymerase"
FT /ribosomal_slippage
FT /protein_id="AAU04781.1"
FT /translation="MSSRVFMAIFLVLCYISCPAFSTMTTKWAGLPSGASQIIFANLSY
FT GDLFVDSTPEYKIGEGEVTGLTYKDSGIAELTSHSYTGLMGAILAKIYSDVQKPFSPLW
FT KISLERLESFTKSGIELSHTLIESCLWTVVTIWLAAYSMIARLGWSLITNFTLPVLALA
FT ILCLLTTVICRALIWLYSQLPMFLLTFPWAMIKLVTKLRFRRSKVIKEQACEGYTTFSI
FT PQNPPKHSVVEIIHPDGSHSGYATCVKLHNGHNGLLTAYHVVSSEGKAVHSLRNGAKIK
FT LDAFKPFFENEFLDISLFQGPPSWESALACSSVNMVCVNSLALCEARLFGFEGDQWKSR
FT NAKIIGSYEKQVSVLSNTDKGDSGSAYFHGKNVVGVHSGYPTDGENFNLMAPIPNIPGL
FT TSNKLVFETTAPQGRVFDDETLNYFDELCEEYSIEEARYIMQNRRGKNLEGKSQNQGNR
FT ATLHRQRNKRRSKHPKDKAREYYATPSNGGPRRKSNTSSTGGHDGEDLRGSPKPSKHGG
FT HRGENRRESGQAGCGEAQQIPRNARWEEDARGFEEYFARIYNWQVPPTSLQVPGFRDVG
FT ATPKYYHSKQKEESKWGRKLTEQHPELAEKTAGFGWPQFGAQAELKSLRLQASRWLDRA
FT QTAKTPSDAQREHVINRTVSAFAAAQTQTPSFCTKDKLTWPEFLENFKLAVNSLELDAG
FT VGVPFVSYGLRTHRDWVENPKLLPVLARMTFDRLQKISEVNFSDMTPEELVQNGLCDPI
FT RLFVKGEPHKQSKLDEGRYRLIMSVSLLDQLVARVLFQSQNKLEIALWRAVPSKPGFGL
FT STDNQIENFVDCLAKQVGETPEEVIANWPKYLIPTDCSGFDWSVSDWLLEDDMEVRNRL
FT TIDCTPLLKRLRAGWLKCISNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAA
FT YHCGASWAMAMGDDALESIDTDLSVYKNLGFKVEVSAQLEFCSHIFKERNLAIPVNINK
FT MLYKLIHGYNPECGNAEVLSNYLSAVVSVMNELRHDPALVSKLFQWLVPSAATKEF"
FT gene 159. .2021
FT /gene="p1"
FT CDS 159. .2021
FT /codon_start=1
FT /db_xref="GOA:Q670I3"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR001254"
FT /db_xref="UniProtKB/TrEMBL:Q670I3"
FT /note="ORF1"
FT /gene="p1"
FT /product="p1 protein"
FT /protein_id="AAU04780.1"
FT /translation="MSSRVFMAIFLVLCYISCPAFSTMTTKWAGLPSGASQIIFANLSY
FT GDLFVDSTPEYKIGEGEVTGLTYKDSGIAELTSHSYTGLMGAILAKIYSDVQKPFSPLW
FT KISLERLESFTKSGIELSHTLIESCLWTVVTIWLAAYSMIARLGWSLITNFTLPVLALA
FT ILCLLTTVICRALIWLYSQLPMFLLTFPWAMIKLVTKLRFRRSKVIKEQACEGYTTFSI
FT PQNPPKHSVVEIIHPDGSHSGYATCVKLHNGHNGLLTAYHVVSSEGKAVHSLRNGAKIK
FT LDAFKPFFENEFLDISLFQGPPSWESALACSSVNMVCVNSLALCEARLFGFEGDQWKSR
FT NAKIIGSYEKQVSVLSNTDKGDSGSAYFHGKNVVGVHSGYPTDGENFNLMAPIPNIPGL
FT TSNKLVFETTAPQGRVFDDETLNYFDELCEEYSIEEARYIMQNRRGKNLEGKSQNQGNE
FT QRCTASATNGAPNIQKTKRVNTTPPPVMEVPVESQTPLPQEDMMGKILEALLSRVNMAD
FT IEAKIVEKVAKQAVEKHNKSRGTRGGKKTPEASKNTSQESTTGKYRPPHSRSPGSVTSE
FT QPPNTTTPNKRRNQNGGGNSRSSTQSWQRKQPVSGGPSSGPKQS"
FT gene 3511. .5613
FT /gene="p5"
FT CDS 3511. .5613
FT /codon_start=1
FT /db_xref="GOA:Q670I2"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q670I2"
FT /note="ORF3 and ORF5; translated by in-frame readthrough of
FT ORF3 stop codon"
FT /transl_except=(pos:4135. .4137,aa:OTHER)
FT /gene="p5"
FT /product="CP readthrough protein"
FT /protein_id="AAU04784.1"
FT /translation="MATYGLTKRATGIKPMVVVNTPSRRPRRRTRTKPIVVVQTARTGR
FT RRRRRRGRGSGNPRTMGGSGGGISSQKFVFSKDNIAGSSGGVLTFGKDLSDHPAFSNGL
FT LKAFHQYKITNMRVRYISEAPSTAGGSISYELDPSCELDKLSSTIYKFGVLKNGQASWS
FT AEKINGKEWHSSSENQFRFLWKGNGSNSTVGSFEIHYTCLFQNPKXVDAEPGPSPGPSP
FT PPLPTPTPEPTPKQHERFIVYVGSPTMDIQARENDDIITLTEPGPQNWRRIQDEDMNEV
FT SLDSRFWTNSDLKAKPMFYFPVPAGSWSVDITCEGYQPTSDPTKQGDNRSDGLIAYSAD
FT NNDNLWNVGQTGSLKISNLRGINTFKAGHPKLVVNGCNFNDGQVMERDGTLSFHVQTEK
FT DGSFFLTGPPVQKQGRYNYTVSYGEWTKRILEFGLITVVLDEHLDNSGSNKFKRPPRNG
FT HQWAGLVTDTVMENTVSDKTPDPPKSKRKLEPEKANSDNKLPEPQKRKLVIDPKLDEVE
FT VESIPDAPEDFNWATLGIPRGKGPASLAGFNDTELARGKDQSSDDELPSHFSAPGLDEI
FT PAKPQPVDLSQTSFDYGTHIPNTDDLGMFDRPGDKPVVSGILDKQRVKSFGKRLLPALS
FT GSTTSSLQGGTLRQKYSDATRKYMSSEEVVKANKIRTSLGKTALANYLKSLNLHERVGS
FT SPSQEQ"
FT gene 3511. .4137
FT /gene="p3"
FT CDS 3511. .4137
FT /codon_start=1
FT /db_xref="GOA:Q670I1"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q670I1"
FT /note="ORF3"
FT /gene="p3"
FT /product="coat protein"
FT /protein_id="AAU04782.1"
FT /translation="MATYGLTKRATGIKPMVVVNTPSRRPRRRTRTKPIVVVQTARTGR
FT RRRRRRGRGSGNPRTMGGSGGGISSQKFVFSKDNIAGSSGGVLTFGKDLSDHPAFSNGL
FT LKAFHQYKITNMRVRYISEAPSTAGGSISYELDPSCELDKLSSTIYKFGVLKNGQASWS
FT AEKINGKEWHSSSENQFRFLWKGNGSNSTVGSFEIHYTCLFQNPK"
FT gene 3521. .4090
FT /gene="p4"
FT CDS 3521. .4090
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q670I0"
FT /note="ORF4"
FT /gene="p4"
FT /product="movement protein"
FT /protein_id="AAU04783.1"
FT /translation="MDSPREQQELNPWLLSTHLQGAHVDVHGLSQSLWYKPHELDEDDE
FT DAEDAALVTHEQWEDPEAESVARSLCFRRTTSRAAPVESSPSARIYQTTLLSAMDYSRH
FT STNIKSQTCEYVTSRKPHQPPVARSLMSWTPVVNSINFRAQSTNSGSSRMVKPLGALKR
FT LMGRSGTPLRRTNSGSSGREMEVIRR"
XX
SQ Sequence 5723 BP; 1650 A; 1378 C; 1346 G; 1349 T; 0 other;
ay695933 Length: 5723 11-JAN-2006 Type: N Check: 7007 ..
1 acaaaacaaa ccgagggaga taatcttgat gctcttgatc actcttaaag
51 gaacagtatc ttactacgtc ccgacagact catcagctcg attatttgct
101 tacaaatact ttatacacca cgtgcttgct ttgtcatttg caactttaca
151 attgtacaat gtcgagccgt gtttttatgg caatcttcct cgtgctctgc
201 tatatatcct gccctgcatt ctcaacaatg actacaaaat gggcgggtct
251 gccatctggt gcaagccaga ttatattcgc gaacttgtcc tatggggact
301 tgtttgtgga ttctaccccc gaatacaaaa taggggaagg agaggttacc
351 gggttaactt acaaagactc gggaatcgca gagcttacct ctcattctta
401 cacaggcttg atgggcgcaa tcttagcgaa aatctactca gacgtccaga
451 agcctttttc accactgtgg aagatttctc tcgaacgatt ggagtctttt
501 accaaatcag ggatagagct ctcgcacact cttatagaga gttgcctctg
551 gaccgttgtc acgatctggt tggcagccta ttccatgata gcgagactgg
601 ggtggtcact tataaccaac ttcactctac ctgtccttgc gctggctatt
651 ctctgcttat taacgacagt gatttgccgt gctctgattt ggctctattc
701 acagctccct atgttccttt taacgtttcc ttgggccatg atcaaattgg
751 tcaccaagtt gagattcagg aggagtaagg tgatcaagga acaagcctgc
801 gagggataca ctacattttc tatcccccaa aaccccccaa aacattccgt
851 ggtggaaata attcacccag acggatccca ctcaggatat gccacctgtg
901 taaaattgca caatggccac aatgggcttt taacagctta tcacgtggtt
951 tctagtgaag gtaaggctgt ccattcgctc cgaaacggtg ccaagataaa
1001 gttggatgct ttcaagccct tctttgaaaa tgaattcttg gatataagtc
1051 tgtttcaggg gcctccgagt tgggaaagtg ccttggcttg ctcgagcgta
1101 aacatggttt gcgtaaactc gcttgccttg tgcgaagccc gtctcttcgg
1151 attcgagggg gatcaatgga agtccaggaa tgcgaagata atcggaagct
1201 atgaaaaaca agtttccgtt ttgtctaaca cggacaaggg ggatagtggt
1251 tctgcctatt ttcatggcaa gaatgtggta ggggtgcact ccggttatcc
1301 aacagacgga gaaaatttta atctcatggc cccaatcccc aacatccccg
1351 gtttaacctc caacaagctg gtcttcgaaa ccacagctcc acagggtcga
1401 gtttttgatg atgaaactct caattacttt gacgagctct gtgaagagta
1451 ttcaatagaa gaagccagat acataatgca aaacaggaga gggaaaaacc
1501 tagaagggaa atcccagaac cagggaaacg agcaacgctg caccgccagc
1551 gcaacaaacg gcgctccaaa catccaaaag acaaagcgcg tgaatactac
1601 gccaccccca gtaatggagg tccccgtcga aagtcaaaca cctcttccac
1651 aggaggacat gatggggaag atcttagagg ctctcctaag ccgagtaaac
1701 atggcggaca tcgaggcgaa aatcgtcgag aaagtggcca agcaggctgt
1751 ggagaagcac aacaaatccc gcggaacgcg cggtgggaag aagacgccag
1801 aggcttcgaa gaatacttcg caagaatcta caactggcaa gtaccgccca
1851 cctcactcca ggtccccggg ttccgtgacg tcggagcaac ccccaaatac
1901 taccactcca aacaaaagga ggaatcaaaa tgggggcgga aactcacgga
1951 gcagcaccca gagctggcag agaaaacagc cggtttcggg tggccccagt
2001 tcggggccca agcagagtta aaatctctgc ggctgcaagc gtcaaggtgg
2051 ctggaccgtg cccagaccgc caaaactcct tctgacgcac aaagagagca
2101 cgtgattaac cgtacagtta gcgccttcgc ggctgctcaa actcaaactc
2151 cgagtttctg tacgaaggac aagttgacat ggcccgaatt tcttgaaaat
2201 tttaagttgg ccgtcaactc tctggaatta gacgctggtg tgggagtccc
2251 ttttgtctct tatggcttaa ggacacaccg cgattgggtt gaaaatccca
2301 agctcctacc cgttctcgcg agaatgactt ttgatcgact acagaagata
2351 tcagaagtta attttagcga catgacaccg gaggagctag ttcaaaacgg
2401 gctctgcgat cctatcagac tattcgtcaa gggagagcct cacaaacaga
2451 gcaaactcga tgaaggccgc taccgcctca taatgagtgt gtcattacta
2501 gaccaattgg tagcccgggt cttgttccag tctcagaaca agttagaaat
2551 cgcgctttgg agagcagtac cttcaaaacc cggatttggc ctttccacgg
2601 acaatcaaat tgaaaatttt gtagattgtc tagccaagca agtgggggag
2651 acaccagaag aggtcatagc taactggcct aaatatttaa tccccacaga
2701 ttgctcaggt ttcgattggt cggtttcaga ctggcttctc gaagatgaca
2751 tggaggtgag aaatcgcttg accattgact gcacccctct tttaaagagg
2801 ctgcgagcag gatggttaaa atgcatttcc aactctgtct tgtgcctttc
2851 tgatggcacc ctgttagccc aaactgtccc aggggttcag aagagtggat
2901 cgtataacac gagttcctct aattctagaa tccgggttat ggcagcctat
2951 cattgtggcg cctcttgggc tatggcaatg ggcgatgatg ccctggaaag
3001 catagacacg gacctatccg tgtataaaaa tttaggtttt aaagtcgagg
3051 tttcagcaca actggaattt tgctctcaca tatttaagga gagaaacctc
3101 gccattccgg tgaatatcaa caaaatgttg tataaactta tccacgggta
3151 caatccggaa tgtggaaacg cggaagtcct cagcaactac ttaagtgctg
3201 tggtctccgt catgaatgag ctgagacatg atccagctct cgtttccaaa
3251 ctcttccagt ggctggttcc cagtgccgcc acaaaagaat tctaggaaga
3301 gaactgaagc tagccgagaa acacgttgtt gcaatcgtcg gaagcaaagc
3351 caactacaag aaagccacca tagattataa atttttagca ggtaccgcca
3401 caggattcat tttagcgata ccaatctgtg tgataggctt atactacgtc
3451 tatcttaaaa tatcctctaa catacaatca atcgtaaacg aatacggcag
3501 agggtaattt atggccacgt atggactcac caagagagca acaggaatta
3551 aacccatggt tgttgtcaac acaccttcaa ggcgcccacg tcgacgtaca
3601 cggactaagc caatcgttgt ggtacaaacc gcacgaactg gacgaagacg
3651 acgaagacgc agaggacgcg gctctggtaa cccacgaaca atgggaggat
3701 ccggaggcgg aatcagtagc cagaagtttg tgttttcgaa ggacaacatc
3751 gcgggcagct ccggtggagt cctcaccttc ggcaaggatt tatcagacca
3801 ccctgctttc agcaatggac tactcaaggc attccaccaa tataaaatca
3851 caaacatgcg agtacgttac atctcggaag ccccatcaac cgccggtggc
3901 tcgatctctt atgagctgga ccccagttgt gaactcgata aactttcgag
3951 cacaatctac aaattcgggg tcctcaagaa tggtcaagcc tcttggagcg
4001 ctgaaaagat taatgggaag gagtggcact cctcttcgga gaaccaattc
4051 aggttcctct ggaagggaaa tggaagtaat tcgacggtag gttcatttga
4101 aatacattac acctgccttt tccaaaatcc taaataggta gacgcggaac
4151 cggggcctag tccaggccca agcccccccc ccctcccaac cccaacccca
4201 gaacccactc cgaagcaaca tgagcgtttt atagtgtatg taggctcgcc
4251 cactatggat atacaggccc gagagaatga tgatatcata accttgacgg
4301 agcctggacc acaaaattgg cgccgcatac aagatgagga catgaacgag
4351 gtttccttag attcccgttt ttggaccaac tcagatctta aagccaaacc
4401 catgttttac ttcccagttc ccgctggtag ctggtcagtc gacataacct
4451 gtgaaggata tcagccgact tcagacccta caaagcaagg tgacaatagg
4501 agtgatggat tgatagccta ctctgctgac aataatgaca atttgtggaa
4551 tgtcggtcag acaggcagtc ttaagatttc caatttgcga ggtataaaca
4601 ccttcaaagc tggtcatccg aaactggtgg taaatgggtg caattttaat
4651 gatgggcagg tgatggagag ggatgggact ctttcattcc atgtacagac
4701 agagaaagat ggaagcttct tcctcactgg acctcccgta cagaaacagg
4751 gaagatacaa ctataccgtt tcttatggtg agtggaccaa acgaatttta
4801 gagttcggct tgataaccgt tgtcttagac gaacatttag acaactccgg
4851 ttccaacaaa tttaaaagac cccctaggaa tggacaccag tgggccggtc
4901 tcgtgaccga tacggtgatg gaaaacaccg tttctgataa aaccccagac
4951 ccgccaaagt ctaaacgtaa acttgagccg gagaaagcaa actccgataa
5001 taaactcccg gaacctcaaa agcgaaagct tgtaatagat ccaaagttgg
5051 atgaggttga agtggagtca atacccgatg caccagaaga ttttaactgg
5101 gccactcttg gcataccaag aggtaaaggt ccagctagtc tagccgggtt
5151 taacgacact gaactggcaa ggggaaaaga ccagagtagt gatgacgaat
5201 taccatctca tttttctgct cctggtttag atgaaatacc cgccaaacca
5251 caaccggtgg atctctcgca gacctcgttc gactacggaa cccacatacc
5301 taatacagat gatctcggga tgtttgatcg accaggtgat aagcccgttg
5351 tttcaggaat tcttgataaa cagcgggtta agagttttgg aaaacgcctt
5401 ttgcccgcgt taagcggtag cacaactagt tcccttcaag gaggcacttt
5451 gagacagaag tattcagatg ctacacgaaa gtacatgtca tctgaagaag
5501 tagttaaggc taacaaaatt cgaacatcgt tagggaaaac ggctttagcc
5551 aattatctta aatcccttaa cctgcatgag agagtaggga gctccccctc
5601 acaagagcaa tgaagcgcca aacttcaata aaattggaac gaaaggctta
5651 aaactgagta ggcacgaatc tccgttggag aagcgagtcg gtaaagcgta
5701 ccctctcctc gggatttcgg tgt