Sequence of DPV Unnamed tomato begomovirus

Begomovirus sp. CR-2004-2 coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.

ACC No: AY738097

Dated: 2005-04-22 | Length: 1288 | CRC: 1227591815

                !!NA_SEQUENCE 1.0
ID   AY738097   standard; genomic DNA; VRL; 1288 BP.
XX
AC   AY738097;
XX
SV   AY738097.1
XX
DT   22-APR-2005 (Rel. 83, Created)
DT   22-APR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Begomovirus sp. CR-2004-2 coat protein (AV1) gene, partial cds; replication
DE   associated protein (AC3) and transactivator protein (AC2) genes, complete
DE   cds; and replicase (AC1) gene, partial cds.
XX
KW   .
XX
OS   Begomovirus sp. CR-2004-2
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified begomoviruses.
XX
RN   [1]
RP   1-1288
RA   Chowda Reddy R.V., Colvin J., Muniyappa V., Seal S.;
RT   "Molecular characterization of a begomovirus in Malvastrum at Belgaum,
RT   India";
RL   Unpublished.
XX
RN   [2]
RP   1-1288
RA   Chowda Reddy R.V., Colvin J., Muniyappa V., Seal S.;
RT   ;
RL   Submitted (13-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Plant Animal and Human Health Group, Natural Resources Institute,
RL   University of Greenwich, Central Avenue, Chatham Maritime, Kent ME4 4TB,
RL   United Kingdom
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1288
FT                   /country="India:Belgaum"
FT                   /db_xref="taxon:307809"
FT                   /mol_type="genomic DNA"
FT                   /organism="Begomovirus sp. CR-2004-2"
FT   gene            <1. .420
FT                   /gene="AV1"
FT   CDS             <1. .420
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="AAW50885.1"
FT                   /translation="GKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNE
FT                   PSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYEN
FT                   HTENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT   gene            complement(423. .827)
FT                   /gene="AC3"
FT   CDS             complement(423. .827)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication associated protein"
FT                   /protein_id="AAW50886.1"
FT                   /translation="MDLRTGEPITAAQAWSGAYIWDVPNPLYFKILSHHNRPFTSNMDI
FT                   ITIRIQFNYNLRRALRVHKCFLTFRVWTTLHPQTGLFLRVFKTQVLKYLNNLGVISLNS
FT                   IIRAVDHVLYNKIEQTMYVDQSSEIKFDLY"
FT   gene            complement(520. .972)
FT                   /gene="AC2"
FT   CDS             complement(520. .972)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein"
FT                   /protein_id="AAW50887.1"
FT                   /translation="MRSSSPSKDHCTQVPIKVQHREAKRHNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSMEWRLYLGRSKSPIFQDPKPPQPAIHEQHGHNNDQNPIQLQP
FT                   SESSASAQMFSDLPSLDDLTPSDWSFLKGIQDTSPQVSQQSGCNLT"
FT   gene            complement(869. .>1288)
FT                   /gene="AC1"
FT   CDS             complement(869. .>1288)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replicase"
FT                   /protein_id="AAW50888.1"
FT                   /translation="TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLK
FT                   HFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNIALKNWAV
FT                   KNAIFVTLEGPLYSGTNQSTTQGSQEAQQEEESRS"
XX
SQ   Sequence 1288 BP; 338 A; 249 C; 297 G; 404 T; 0 other;

 AY738097  Length: 1288  April 26, 2005 08:40  Type: N  Check: 1358  ..

       1  gggaaaattt ggatggacga gaacatcaag accaagaatc atactaatac
      51  tgttctgttt tggatcgtga gagataggcg tccatcagga actccgaacg
     101  attttcagca agtgttcaat gtttatgaca acgagccctc tacggctact
     151  gtgaagaacg accagcgtga tcgttttcag gtgttaagga ggttccaagc
     201  aacagtcaca ggtggtcaat atgctgctaa ggaacaggct ataattagga
     251  aattctatcg tgttaacaat tatgtggttt ataatcatca ggaagctggg
     301  aagtatgaga atcacactga gaatgcttta ttgttgtata tggcatgtac
     351  tcatgcctct aatcctgtgt atgctacttt gaaagttaga agctacttct
     401  acgattctgt aaccaattga tattaataaa gatcgaattt tatttctgaa
     451  gattgatcta catacatagt ttgttctatt ttattgtaca atacatgatc
     501  tacagctcta ataattgaat taagtgagat tacacccaga ttgttgagat
     551  acttgaggac ttgtgtcttg aataccctta agaaaagacc agtctgaggg
     601  tgtaaggtcg tccagactcg gaaggtcaga aaacatttgt gcactcgcag
     651  agctctccga aggttgtaat tgaattggat tctgatcgtt attatgtcca
     701  tgttgctcgt gaatggccgg ttgtggtggc ttaggatctt gaaatatagg
     751  ggatttggaa cgtcccaaat ataggcgcca ctccatgctt gagctgcagt
     801  gatgggttcc cctgtgcgta aatccatggt tgtggcagtt gatagacaaa
     851  taataagaac acccgcattc aagatcgact ctcctcctcc tgttgtgcct
     901  cttggcttcc ctgtgttgta ctttgattgg tacctgagta caatggtcct
     951  tcgagggtga cgaagatcgc attctttact gcccagtttt ttaatgcgat
    1001  gttcttttcc tcgtctagat attctttata actgctgttg ggacctggat
    1051  tgcagaggaa gattgtcggt atcccgcctt taatttgaac tggtttaccg
    1101  tacttagtat tggactgcca gtccctttgg gcccccatga actctttaaa
    1151  gtgcttgagg aagtgcggat cgacgtcatc aatgacgtta taccatgcgt
    1201  cgttgctgta gacctttggg cttagatcta ggtgaccaca taaatagtta
    1251  tgtgggccta atgacctagc ccacatcgtt ttacccgt