Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus isolate YV segment A, complete sequence.
ACC No: AY795987
Dated: 2005-04-22 | Length: 2800 | CRC: 1998616075
!!NA_SEQUENCE 1.0
ID AY795987 standard; genomic DNA; VRL; 2800 BP.
XX
AC AY795987;
XX
SV AY795987.1
XX
DT 24-MAR-2005 (Rel. 83, Created)
DT 22-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE East African cassava mosaic virus isolate YV segment A, complete sequence.
XX
KW .
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2800
RX PUBMED; 15784145.
RA Ndunguru J., Legg J., Aveling T., Thompson G., Fauquet C.;
RT "Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of
RT cassava geminiviruses in Africa and evidence for East Africa being a center
RT of diversity of cassava geminiviruses";
RL (er) Virol. J. 2 (1), 21 (2005)
XX
RN [2]
RP 1-2800
RA Ndunguru J., Fauquet C.M.;
RT ;
RL Submitted (27-OCT-2004) to the EMBL/GenBank/DDBJ databases.
RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, St.
RL Louis, MO 63132, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2800
FT /country="Tanzania"
FT /db_xref="taxon:62079"
FT /mol_type="genomic DNA"
FT /organism="East African cassava mosaic virus"
FT /isolate="YV"
FT /segment="A"
FT gene 174. .527
FT /gene="AV2"
FT CDS 174. .527
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AAX39364.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IVFYGVRDYVEATRRYNNLNTRIQGAEEAELRQSIRTVLLPPLSASPEAKYGQQAHVSE
FT AQDVQNVSKPRCP"
FT gene 334. .1104
FT /gene="AV1"
FT CDS 334. .1104
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AAX39365.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYEPCCCPHCPRHQKQNMAN
FT RPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHRV
FT GKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGSSPQDFGQVFNMFDNEP
FT TTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQSLVKRFYKINNHVVYNHQEQAKYENH
FT TENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1101. .1505)
FT /gene="AC3"
FT CDS complement(1101. .1505)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AAX39369.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFAITHHDTRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1246. .1653)
FT /gene="AC2"
FT CDS complement(1246. .1653)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /protein_id="AAX39368.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGDNKPPLFRNHPPRHETREHEPRHHHTPDTVQPQ
FT PSEGVGDSQMFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1562. .2641)
FT /gene="AC1"
FT CDS complement(1562. .2641)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AAX39366.1"
FT /translation="MPDARSFQINAKNYFITYPRCSLTKEEALSQLKALSFPTNIKFIR
FT VCRELHQDGVPHIHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYAEALSASSKSEALQIIKEKDPKSFFLQFY
FT NISANADRIFQAPPQTYVSPFLSSSFTQAPEDIEVWVSENICSPAARPWRPISLVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSFKEFLEEEQNQSLKAWAIKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2251. .2484)
FT /gene="AC4"
FT CDS complement(2251. .2484)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AAX39367.1"
FT /translation="MGCLISMFSYNSKASSNVPTRDSSISYPHPDQHISIRTFRALNHR
FT PMSKLTLKREGNFLTMEFSKSMPEVQGERASI"
XX
SQ Sequence 2800 BP; 743 A; 555 C; 713 G; 789 T; 0 other;
AY795987 Length: 2800 April 26, 2005 08:32 Type: N Check: 8562 ..
1 accggatggc cgcgcccgaa aaagcagggg gaccccacaa tatggccgcg
51 cccatgaaag aaagtggtcc ccgcgcacat gtgttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt gtgtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt aaacgatttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 gcatttggaa caggaatacg atcgcgggac tgtcggggct gaatatatac
301 gggatctaat agtgttctac ggtgtaagag attatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagtcc atacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tggccaacag gcccatgtat cggaagccca agatgtacag
501 aatgtatcga agcccagatg tccctaaggg ctgtgaaggc ccatgtaagg
551 ttcagtccta tgaacagaga gatgatgtta agcacactgg tatggtccga
601 tgtgtcagtg atgttactcg tggatcaggt attacccata gagtcgggaa
651 gagattttgt gtgaagtcta tatatatatt gggcaagatc tggatggatg
701 agaatatcaa gaagcaaaat catacgaacc atgttatgtt cttcctcgtg
751 cgagatagaa ggccttatgg gtcgagtcca caagattttg gacaagtgtt
801 caacatgttt gataatgaac ctactactgc aactgtgaag aatgatctta
851 gggaccggta tcaagtatta cgtaaattct atgcgactgt tgttggcgga
901 ccctctggga tgaaggagca atcgctggtc aagaggtttt ataagatcaa
951 taatcatgta gtgtataatc atcaggaaca ggccaagtat gaaaatcata
1001 ctgagaacgc gttgttatta tatatggcat gtacacatgc ctctaatcct
1051 gtgtacgcta cgctgaaaat acgcatctat ttctatgatg cagtgacaaa
1101 ttaataaagg ttgaatttta ttgcatgttg ctccgtaact tggagagtgt
1151 ttagtaatac atcgtacaaa acatgatcaa cagcttgcag tacagtatta
1201 atggaaataa cgcctatcat atctaaatac tttagcactt ggtatctaaa
1251 tactcttaag aaaagaccag tctgaggccg taaggtcgtc cagaccttga
1301 agttgagaaa acatttgtga atccccaacg ccttccgaag gttgtggttg
1351 aaccgtatct ggagtgtgat gatgtcgtgg ttcatgttcc ctggtctcgt
1401 gtcgtggtgg gtgattgcga aatagagggg gtttgttatc tcccaggtaa
1451 aaacgccatt ctttgcttga ggcgcagtga tgagttcccc tgtgcgagaa
1501 tccatggttg atacagtcga tatggagata gaacgagcag ccgcattcga
1551 ggtctacccg cctacgtctg acggccctgg tcttcgctgt gcggtgttgg
1601 actttgatgg gcacttgaga acaatggctc gtggagggtg atgaaggtgg
1651 cattctttat agcccaggct ttaagggact ggttctgttc ttcttccaga
1701 aactctttaa atgatgatgt tggtcctgga ttgcaaagga agatagtggg
1751 aatgccgcct ttaatttgaa tcggcttccc gtactttgta ttgctttgcc
1801 agtccctttg ggcccccatg aactctttga aatgcttgag gtagtgaggg
1851 tcgacgtcat caatgacgtt gtaccatgcg tcgttactgt atacctttgg
1901 agacagatcc aggtgtccac ataaataatt atggggtccc aaagaacgag
1951 cccacatggt tttcccggtt cggctatcac cttctagaac aagactgatc
2001 ggtctccatg gccgcgcagc gggactgcaa atattttcag atacccatac
2051 ttcgatgtct tcaggggctt gtgtaaatga agatgataaa aatggactaa
2101 cgtaagtttg tggcggagcc tggaagattc tatcggcgtt agcagatatg
2151 ttatagaact gtaaaaaaaa tgacttggga tctttttcct taataatttg
2201 aagagcttcg gatttagaag aggcactcaa cgcttctgca tatacttgag
2251 ctaaatgctg gccctctccc cttgcacttc gggcatcgac ttggaaaatt
2301 ccatcgtcaa gaaattcccc tcccttttca atgtaagctt tgacatcgga
2351 cgatgattta gcgccctgaa tgttcggatg gaaatgtgtt gatcgggatg
2401 gggatatgag atcgaagaat ctcgggttgg tacattggaa cttgccttcg
2451 aattgtatga gaacatggat atgaggcacc ccatcctgat gtagttctct
2501 gcaaacccta atgaatttga tgttcgtcgg gaaagaaagg gcttttaatt
2551 gggaaagggc ctcttccttg gttaatgagc atcggggata agtgatgaaa
2601 taatttttgg catttatttg aaacgaccgg gcgtcgggca tatttgttgg
2651 tcgcttttgg ggtcggtgga cacctcatgc ctatggcaat cgggggaacg
2701 ggggacaata tatagtatgt ccccaatggc atatgtgtaa ataggtagac
2751 ttccattcga aatttgaatt tcgcatattg gcggccatcc gattaatatt