Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV strain PAV-CN, complete genome.
ACC No: AY855920
Dated: 2007-06-29 | Length: 5652 | CRC: -994426307
ID AY855920; SV 1; linear; genomic RNA; STD; VRL; 5652 BP.
XX
AC AY855920;
XX
DT 15-JAN-2005 (Rel. 82, Created)
DT 29-JUN-2007 (Rel. 92, Last updated, Version 4)
XX
DE Barley yellow dwarf virus - PAV strain PAV-CN, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5652
RA Liu F., Wang X., Liu Y., Xie J., Gray S.M., Zhou G., Gao B.;
RT "A Chinese isolate of barley yellow dwarf virus-PAV represents a third
RT distinct species within the PAV serotype";
RL Arch. Virol. 152(7):1365-1373(2007).
XX
RN [2]
RP 1-5652
RA Liu F., Wang X., Zhou G.;
RT ;
RL Submitted (14-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Institute of Plant Protection,Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No. 2, Beijing 100094, China
XX
DR RFAM; RF00434.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5652
FT /organism="Barley yellow dwarf virus - PAV"
FT /strain="PAV-CN"
FT /isolate="China"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12040"
FT CDS join(140. .1156,1156. .2742)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase P1-P2 fusion
FT protein"
FT /note="low-abundance product derived from C1 ribosomal
FT frameshift"
FT /db_xref="GOA:Q5I4G8"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G8"
FT /protein_id="AAW50579.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF
FT FLKSRGGVYAPLNCEPKSTELEVKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCWN
FT DLRTRLQLVKSVKDEARDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTRV
FT VNGEEETSTVPLVEDVRRIKNDEASRECASNWIREVIKLKNSTLSADELSLATIARYVE
FT NLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARSLRERMAVLDSQGFL
FT EGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNAL
FT VAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFSESIVHKVGYCKTYTPQQLALSYSA
FT GKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSMFGSPTVLSGYDSFTQGEIIARKWQKFASPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERVNQHLFSGMHDHFLKYGFNMVTET
FT PVYELGELEFCQSKPVRIGGSYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCGL
FT VLNAGVPILESFYRCLHRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITTDNRM
FT SYWESFGVDPKIQQLVERYYDNLKVSAQLQSVKVTTPHLQSILLSIPENNSHNEY"
FT CDS 140. .1159
FT /codon_start=1
FT /product="P1"
FT /note="ORF1; RNA-dependent RNA polymerase P1"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G7"
FT /protein_id="AAW50578.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWTDF
FT FLKSRGGVYAPLNCEPKSTELEVKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCWN
FT DLRTRLQLVKSVKDEARDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTRV
FT VNGEEETSTVPLVEDVRRIKNDEASRECASNWIREVIKLKNSTLSADELSLATIARYVE
FT NLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARSLRERMAVLDSQGF"
FT CDS 2856. .4790
FT /codon_start=1
FT /transl_except=(pos:3453. .3455,aa:OTHER)
FT /product="aphid transmission protein P5"
FT /note="translated from subgenomic RNA1 as a fusion protein
FT via read-through of the coat protein (P3) stop codon"
FT /db_xref="GOA:Q5I4G6"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G6"
FT /protein_id="AAW50582.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP
FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF
FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW
FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY
FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNVL
FT IDEGYHQTLPPIQDFGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE
FT DVLPSREQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDASKA
FT PSTMLYDKAPKPKSFLSRLVEGNRSKVDTSAPSTATTSNLTREQLREYTRIRNSLGLTA
FT AKEYKAQFS"
FT CDS 2856. .3455
FT /codon_start=1
FT /product="coat protein P3"
FT /note="ORF3; translated from subgenomic RNA1; occasional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /db_xref="GOA:Q5I4G5"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G5"
FT /protein_id="AAW50580.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK"
FT CDS 2896. .3357
FT /codon_start=1
FT /product="movement protein P4"
FT /note="ORF4; translated via leaky scanning on subgenomic
FT RNA1"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G4"
FT /protein_id="AAW50581.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA
FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL
FT RRALCLLSSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR"
FT CDS 4920. .5042
FT /codon_start=1
FT /product="P6 protein"
FT /note="ORF6; highly variable sequence among BYDV isolates"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:Q5I4G3"
FT /protein_id="AAW50583.1"
FT /translation="MNDLHVIALCVLSSTILAGTALAIGCCVGCCRLIDAAYSV"
XX
SQ Sequence 5652 BP; 1616 A; 1362 C; 1355 G; 1318 T; 1 other;
ay855920 Length: 5652 29-JUN-2007 Type: N Check: 9939 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca agaacggtcc tctcattgcc
101 tgactagctg agagccatcc ttctatcccc accgccacca tgttctttga
151 aatacttata ggagctagtg ccaaggcggt caaagatttc atcagtcact
201 gctactctag actgaaatct atatattatt ctttcaaacg atggctgatg
251 gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt
301 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt
351 tcgccgagag ggaggatgag gtggaagagg ccaggagcct cttgaaactg
401 ctggtcgccc aaaaatccaa atccggggtg accgaggctt ggaccgactt
451 ctttttgaag tcgagaggcg gcgtttacgc gccacttaat tgcgagccta
501 aatccactga acttgaggta aaagcggata agctcgaaaa actcctcgag
551 gacatgcacc tatttgaggt gcgcgcggct aagacttaca tcaaagagaa
601 aggccgcgga ttcatcaact gttggaacga cctgcgaaca cggttacagt
651 tggtgaagtc ggttaaggac gaggccagag ataatatcaa ggcggcctcc
701 aagattggtg tcgagttcac agctccgacc aatattgctg atctctacga
751 gttcactgaa gtatcaaaag tagagacagg tctaaccaag gaaaccacca
801 gggttgtcaa cggtgaggaa gagacatcca cagtacccct ggttgaagat
851 gtccggagga taaagaatga cgaggccagc agggagtgtg cctccaattg
901 gatcagggag gtaattaaac tgaaaaattc caccctttct gctgacgagc
951 tttccctggc aaccatcgcc aggtacgtgg aaaatctagg ggagaaatat
1001 aaacttgaca ttgcttccaa aacttatctt aagcaatgcg caatgatctc
1051 tgtaccaatc ccctcccaaa aagacataaa aacaaagatg gtgatacaga
1101 gccctgctgc ccgctcactg cgtgagcgca tggcagtcct tgattcccag
1151 ggtttttaga ggggctctgt accgcctccg gttttgaaag cccatttacc
1201 attcttggct taccggagat tgcggtcaca gacggagccc ggttacgtaa
1251 ggttagtagc aatatcaatt accttaccca aacccaccta ggcctagtgt
1301 ataaagctcc taatgcatcc ctgcacaacg cgctcgtagc tatcgaaagg
1351 agggtgttta cagtaggaaa gggggattct gccatttacc ccccccaccc
1401 ggaatatgac attttctccg aaacaatggg ctacttctct gagtccattg
1451 ttcacaaggt gggatactgc aagacataca ctccacagca attggctctt
1501 agttacagtg cagggaaaag ggcccagtat ttcaaagcca ttgagtcctt
1551 gaagaaggaa ccctatcaaa ttaaggactc aaatgttcag gcattcctca
1601 agaaggagaa acactggatg accaaagcca tcgccccgcg cctgatttgc
1651 ccccgctcca agcggtacaa tatcatcctt ggaactcgtt tgaagtttaa
1701 cgagaagaag atcatgcatg ccattgatag catgtttgga tcccccactg
1751 tactttcagg ctatgatagt ttcacccaag gtgaaatcat agccagaaag
1801 tggcaaaagt ttgcatcccc cgttgctatc ggtgttgatg ctagccgctt
1851 tgaccaacac gtgtctgagc aggcgcttaa gtgggaacac gggatataca
1901 atggcatttt tggcgacact gaattggccc tcgctctcga acatcaactt
1951 gtgaataaca tcaaaatgtt cgttgaggat aagatgctaa cttttaaggt
2001 tagagggcac aggatgtcag gggacataaa taccagcatg gggaacaagc
2051 tcatcatgtg tggcatgatg cacgcttatt ttaagaaact gggtgttgaa
2101 gcagaactgt gtaacaatgg agatgattgt gtcatcataa ctgagagggt
2151 aaaccaacac cttttcagtg gaatgcatga ccatttcctc aaatacggct
2201 tcaacatggt gacggagacc ccggtttacg aactcgggga gcttgaattt
2251 tgtcaatcca aacccgtcag aatcggtggc agttatcgga tggtccgcag
2301 gcccgattgc atagggaaag atagcaacac acttttgagc atgcgtaatg
2351 aatccgacgt taaaagttac atgtcggctg tggctcagtg tggtctcgtt
2401 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgtt gtctgcatag
2451 aagttcgggg tataagaaag taagcgagga atacatcaaa aacgttatat
2501 catatggaac agatgagcgc cttcaaggta gacgtacctt caaggagaca
2551 cctatcacca cagacaatcg catgtcgtat tgggaatcat ttggagttga
2601 ccctaagatt caacaacttg tcgagaggta ctacgacaat cttaaggtaa
2651 gtgcccaact ccagagtgtg aaggtgacaa ctccacatct gcaatcaatc
2701 ctcctctcca ttccggagaa caactcgcac aacgaatatt aattaccaaa
2751 tcttagccgg gtttgggata gggtttatag taggtatacc ctgtacatta
2801 gctctcacgt actttattta caataaagtt tcagacacca ctagagaggt
2851 ggtgaatgaa ttcagtaggc cgtaggggac ctagaagagc aaacaatggc
2901 acaagaaggc ggcgccgtag agcagttcgg ccagtggttg tggtccaacc
2951 caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa
3001 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc
3051 tcagtcgaca accttaaggc caactcctcc gggatcctca aattcggtcc
3101 cgatctatcg caatgcccag cggtttcaga cggagtactt aagtcctacc
3151 acaattacaa gatctcaagt atcaacgttg agtttagaac acacgcgtcc
3201 gccactacgt cgggcgctat gtttattgag ctcgacacct cgtgcaagca
3251 atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct
3301 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca
3351 tcggtgaatc agttctttct cttgtacaag gcaaatggca cgacgactga
3401 tattgcgggg cagttcatca taaaaattga gcttcacttg atgacggcca
3451 aataggtaga ctcctcaaca ccggaaccta aacccacacc agctccaaca
3501 cccccccctc aacctgagcc caaaccagag cccacacctg cacctccccc
3551 aaaacgcttc tttgagtatg ttggcacccc gatcggagta atatcaactc
3601 gggaaaacac tgatagcata tcagtgtcga agcttggggg tcagtcaatg
3651 cagtacatag agaacgagaa gtgtgagaca aaaaccatcg attctttctg
3701 gagcacaaat aacaacgttt cggcgcaagc cgccttcgtt tttccagtgc
3751 cagaaggatc gtacagtgtg aatatctcgt gtgaaggtct tcaatccgtt
3801 gaccacattg gtggcaacga agatggctat tggattgggc tgatagccta
3851 ctccaattca tcaggtgaca attggggcgt gggcaactac aaagggtgtg
3901 tgtttacaaa tttcttggca acgaatacct ggcgaccagg tcacaaggat
3951 ttaaaactta acgattgcca attcacagac ggacaaatag ttgaaaggga
4001 tgcagtcatg tctttccacg tgcaggcatc aggcaaggac gcctgtttct
4051 acataatggc tcccaaaaca atgaaaactg acaaatacaa ctatgttgtc
4101 tcgtatggag ggtacacgaa caaaaggatg gagttcggta ctatttccgt
4151 tacgtgtgat gaatccgatg ttgaggcact ccgtatgtct aggcactccg
4201 agagtcctac ccgcgtaaat aacgttttaa tagatgaagg ataccatcaa
4251 actttacctc ccatacaaga tttcggactg tgtgatgtgc aaactcccgg
4301 tcaagatgag gtagaggagg atgataaaca aactgtttcc actgaacctg
4351 atatagcgtt gcaggaatac gaggccgcaa cagctgagat tccagacgct
4401 gaagaggatg ttttgccctc tagggaacag ctttcatcta aacctgtgga
4451 cacatccggc gaggaaattc caaaacctcc cccgagggac aatgaaatcc
4501 ttggagtcta ccaaggtcaa cctatatacg ctgatgatgt gccacccatt
4551 gctaggcaga aacttcgaga tgcctccaaa gcaccctcca ccatgctata
4601 cgacaaggca ccaaagccca agtcgttttt atcccgttta gtggaaggga
4651 acaggtccaa ggtagatacc tctgctccat caaccgcaac gacatctaat
4701 ttgaccaggg agcagcttcg tgaatatact agaattagaa atagcttagg
4751 ccttaccgcc gcaaaggagt acaaggcaca attctcgtga agacaaacac
4801 cactcgcgca aatcggatcc tgggaaacag gcngaactta ggttcgtaag
4851 ctcgggtgat tggagggtgg gctgtcaacc caccaccaac tcaccgccgt
4901 atcgtattgc gtgtggccga tgaatgatct tcacgttatt gccctctgtg
4951 tcctctcctc aaccatcctg gcaggtacag cgctagcgat tggttgttgc
5001 gtcggttgtt gcaggttaat agacgcggct tattctgtgt aagttgcgac
5051 caaaaatatc gaggaagctt cggcttagtg agaggattaa cgaccctcag
5101 caacggctgg tcttggcaag cctgaataac ttgctataag acaactggaa
5151 acccaccagt gattaaataa ggtagcttgc ttctgagcta tacactgccc
5201 ccgcgcaatc ggggtaaaca actataactg cccaactcga tgaaacgaga
5251 gtggaggtgg cggagtgggt gacttcgtga tgtgcacccg aacgtcaggt
5301 ttgaagacgt tataaaacac agcgagatgg gaacctcgtt aaaagtccct
5351 cggctgatac acccagtcga ccggacctgt tggcataccc ttgatacgaa
5401 acaagggctt ctgagagcca ctacctgtga tgcaaggtag ggtaagagtc
5451 ttagcaacct ctgcactcgg aagtggacat aaaccatagc aatccaacag
5501 catcccggaa gagagttttc ctcactaggt gaaacgtgcc acgggcctgt
5551 ctcaagcaat ctagctctgc ttgacacagt atctcataga agcaattcta
5601 tggggggact ggattctgac tgccgacact cgcaagagaa gttcggcatc
5651 cc