Sequence of DPV Alternanthera mosaic virus
Alternanthera mosaic virus, complete genome.
ACC No: AY863024
Dated: 2007-03-11 | Length: 6607 | CRC: -1572021191
ID AY863024; SV 1; linear; genomic RNA; STD; VRL; 6607 BP.
XX
AC AY863024;
XX
DT 23-DEC-2005 (Rel. 86, Created)
DT 11-MAR-2007 (Rel. 91, Last updated, Version 3)
XX
DE Alternanthera mosaic virus, complete genome.
XX
KW .
XX
OS Alternanthera mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6607
RX DOI; 10.1007/s00705-005-0646-2.
RX PUBMED; 16211329.
RA Hammond J., Reinsel M.D., Maroon-Lango C.J.;
RT "Identification and full sequence of an isolate of Alternanthera mosaic
RT potexvirus infecting Phlox stolonifera";
RL Arch. Virol. 151(3):477-493(2006).
XX
RN [2]
RP 1-6607
RA Hammond J., Reinsel M.D., Maroon-Lango C.J.;
RT ;
RL Submitted (21-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Floral and Nursery Plants Research Unit, National Arboretum, USDA-ARS,
RL 10300 Baltimore Avenue, Beltsville, MD 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6607
FT /organism="Alternanthera mosaic virus"
FT /specific_host="Phlox stolonifera cv. Sherwood Purple"
FT /mol_type="genomic RNA"
FT /country="USA:Pennsylvania"
FT /virion
FT /db_xref="taxon:85454"
FT 5'UTR 1. .94
FT gene 95. .4720
FT /gene="ORF1"
FT CDS 95. .4720
FT /codon_start=1
FT /gene="ORF1"
FT /product="replicase"
FT /db_xref="GOA:Q2TJB1"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR005123"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q2TJB1"
FT /protein_id="AAX62019.1"
FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP
FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY
FT FHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIRE
FT IFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYS
FT QLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT
FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE
FT LALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEA
FT LEWVDVSLSYRVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDVAPETPQEDEDPHE
FT KYIQALQILTKALDQESAPPPTEPAQSSSINDPQQEEHLRSSHDLHTDESPSCSGSLSS
FT YACHCPCGTELKIFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHVSRGWPA
FT FLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHSDNEPCYDVDHQVLTINLTGEAEF
FT KTSCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQGVTSEEGD
FT YVEPDNLPWKAWLEKLRNLGFRGTQLQYDPNGALISPIESIKSLPKCSPEKVNPSLLKM
FT LNSQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS
FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL
FT APTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF
FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQ
FT AFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNN
FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLD
FT QMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANW
FT QEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLAKPINMLKNGQA
FT RQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMR
FT EIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK
FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHAKFQIPK
FT GTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGF
FT IKDPKKLHASLVLEKKKGNLRNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT
FT LVKSGGGEVLKTFLPKDESLY"
FT variation 178
FT /gene="ORF1"
FT /replace="c"
FT variation 819
FT /gene="ORF1"
FT /replace="g"
FT /note="results in histidine to arginine substitution"
FT variation 1323
FT /gene="ORF1"
FT /replace="a"
FT /note="results in arginine to lysine substitution"
FT variation 1807
FT /gene="ORF1"
FT /replace="t"
FT variation 2641
FT /gene="ORF1"
FT /replace="c"
FT variation 3152
FT /gene="ORF1"
FT /replace="g"
FT /note="results in threonine to alanine substitution"
FT variation 3629
FT /gene="ORF1"
FT /replace="t"
FT /note="results in leucine to phenylalanine substitution"
FT variation 4522
FT /gene="ORF1"
FT /replace="a"
FT variation 4645
FT /gene="ORF1"
FT /replace="a"
FT variation 4669
FT /gene="ORF1"
FT /replace="g"
FT variation 4678
FT /gene="ORF1"
FT /replace="a"
FT variation 4695
FT /gene="ORF1"
FT /replace="c"
FT /note="results in leucine to proline substitution"
FT gene 4704. .5402
FT /gene="TGB1"
FT CDS 4704. .5402
FT /codon_start=1
FT /gene="TGB1"
FT /product="triple gene block 1 protein 26k"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q2TJB0"
FT /protein_id="AAX62020.1"
FT /translation="MNHFINLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQH
FT PQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPLSGSWNVLIADPLQHRS
FT QALRPHYIKRESHRLGAATCELLTRVGLPVLSNKTEDQVDSQGIFEGPLFGTVIALDST
FT VRALLIKHGISPLCPAEVLGSEFEETTVVSEVPLSQVRFKHALYIALTRHRKSLHVRAP
FT PLPDTPRRSL"
FT variation 4819
FT /gene="TGB1"
FT /replace="a"
FT variation 5099
FT /gene="TGB1"
FT /replace="c"
FT gene 5356. .5688
FT /gene="TGB2"
FT CDS 5356. .5688
FT /codon_start=1
FT /gene="TGB2"
FT /product="triple gene block 2 protein 12k"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q52Z68"
FT /protein_id="AAX62021.1"
FT /translation="MSGLPHSLTPPADHSKPVLAAVVGVSLALVINSFLVYRLPSPGDN
FT IHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRARLH
FT RCPCCS"
FT gene 5624. .5815
FT /gene="TGB3"
FT CDS 5624. .5815
FT /codon_start=1
FT /gene="TGB3"
FT /product="triple gene block 3 protein 7k"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q52Z67"
FT /protein_id="AAX62022.1"
FT /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGDCGP
FT VAPETIRALGDYLTGLRF"
FT gene 5858. .6481
FT /gene="CP"
FT CDS 5858. .6481
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:Q52Z69"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q52Z69"
FT /protein_id="AAX62023.1"
FT /translation="MSTPFPQITQEQMNAFTPHATSNLLPSSEQLTTIASLLVAAKVPA
FT ASTTTIALELVNFCYDNGSSTYTVVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFFAP
FT IIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAERIAN
FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE"
FT variation 6112
FT /gene="CP"
FT /replace="c"
FT 3'UTR 6482. .6607
XX
SQ Sequence 6607 BP; 1778 A; 1894 C; 1483 G; 1452 T; 0 other;
ay863024 Length: 6607 11-MAR-2007 Type: N Check: 1874 ..
1 gaaaagtaaa gcaaagcaaa acaaagcaaa gaaactgaaa gtccatattt
51 gcccttcgag gagatcgatt acccatcccg gctagatcaa cagtatggcc
101 cactttcgtt ccgttcttga ccaaatgaat gatcccagcc ttcgggcggt
151 cattcaagaa gaagcttacc gcgaaattaa aaaaactatc gcggaaacta
201 aacagtacaa tccttacgcc caggatccag cggcggctga ctcattagag
251 aaattaggaa tagaatctaa ccccttctca gtccgcgccc atacacacgc
301 ggccgcgaag tctatagaat tagacatgta caaaatcacg ggttactccc
351 tcccaaagga gaatccaatc acttttcttt tcatgaagag gtccaaactt
401 caatacttcc acagaggccc acagcatgga gacttgttcc tcaacgcttg
451 gattgagcca aaggacgtta ccaggtacga cttagaagac ctcttcaaac
501 cttccatcac cccagaaatc caaactagag tggcattcat tggagacaca
551 ctacacttcc ttcccctagg ggctatcaga gagatattta caaactccca
601 aaaacttcac actctctatg caacaatggt actgcccccc gaagccatgc
651 acagaatgca ctcaattcac cccagcatct acgagctaga attccatgaa
701 agaaatttca tatacaagcc gggaggacat gccggggcgt cttattgcca
751 cgaatactca caacttcagt ggctcaaggt cgggaaattt gagtggtgcg
801 acaaaaaata tcagaagcac tatgtgacat cacagattct ggaaaccaag
851 ggtgcaaatc accttttcgt gttccagcgc ggcaatttcg ccacccctac
901 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat
951 tcctcccaaa gaaatacaac gcgcggtatc cgataaagaa aactgtggca
1001 cagcagctat ttctctacat caagtctgtg aaaacagtca cggagagaga
1051 catctgggcc aaagtgagac agatcataaa gaccgctgag ctccaaagct
1101 actcggcaaa agaactcgca ctcattgtca actactactt gctcatttcc
1151 aagctggact ctgtcacatg tttcgacaat gtgcttacag ggggtgcgct
1201 caagaaactc ttcaaaccca ttgtggcttg gtggtccacc ttcaaaggca
1251 agattttcgg gaaggaggag ttcgaacaac ttatggaggc gctcgagtgg
1301 gttgacgtgt cactgtccta cagagtggag acatacagcc aagccaaccc
1351 aaacaatcaa cccaaggtga tgttcgggta tgagtggctc agcacagaaa
1401 cgggaacccc agggacagag gaggacgtcg ctcccgaaac cccacaagag
1451 gacgaggacc cacatgaaaa gtatatccag gccctccaaa tactgacgaa
1501 ggccctcgat caggagagcg ccccaccacc aacagaacca gcccaaagct
1551 ccagcatcaa tgatccacaa caggaggagc acctccgctc atcccacgac
1601 ctccacactg atgaatctcc aagctgctca ggaagcttga gttcttatgc
1651 ttgccactgc ccatgcggca ctgagctcaa aattttttca gccgagtttc
1701 cacccattcc cccactatca cacggcgatc ggctaaaaaa tagggaagca
1751 ttcttcttct caagagatgg cactccctac agctacactg ggggttccca
1801 cgtgtccaga ggatggccgg ctttccttga ccagatcctg gccactgctg
1851 agttggtgag gcctctcccc cacttcaacc aatgcctcat ccaaaaatac
1901 caaaggggcg cctccatccc cttccacagc gacaatgagc catgctacga
1951 tgtggaccac caagtgctca caatcaacct caccggcgaa gcggaattca
2001 aaactagctg caaagccggt tcagggagtt gcacgctggt agagaaccag
2051 ttccacctat cccccccagg cttccaaaag acgcataagc acagtgtagt
2101 ctcacttagt gcggggcgag tctcccttac attccgctcc actgtcaagc
2151 agggtgttac ctctgaagag ggcgattatg ttgagcccga caatctgcca
2201 tggaaggcct ggctcgagaa attgagaaac ctgggattca ggggcacaca
2251 gttgcaatat gatccaaatg gagccttgat ctcaccaatc gaaagcatca
2301 agtcacttcc gaagtgctcc ccggagaagg tcaacccctc cctcctcaag
2351 atgctgaata gtcaggctcg cgcaccaact ccattttcgc cgagccccat
2401 cagagcaaaa gcctattcct cagacgttaa gaactcccga attggcgcat
2451 tactccgaca gcagggcaag gattggggcc accgtttcga ttcactcgtg
2501 gagaatgggc aaagacagct agccatcagt gtgatccatg gggccggcgg
2551 ctctgggaaa tcaagggcgt tgcagatgta cctaaaagac aacccagatg
2601 ctgatgtcac gatagtgctg ccaactaacg agcttaggct agactggttg
2651 aagaaattac ccaccttccc agctgaccag atcaaaacct tcgaaaaggc
2701 cttgctggcc cccacgaagc ccacagtcat cttcgatgat tacggcaaac
2751 tgccggccgg gtatattgag gccttctcgt tctacatgtc ctcggctgaa
2801 cttctggtgc tcaccggtga ttccaagcaa agtgtgcacc acgagtctaa
2851 tgagaatgcg atgagcagcc tcattgaacc cttcaccctg gaagctgaca
2901 agtactcacg ctactacatc aatgccacac acagaaacaa gcgtgatctg
2951 gctaacaagc taggggtcta ctcggaggtc acgggaataa catccatcac
3001 ccaaggcaac caccctgtgc cgggacttca cctgcttgtc ccctcactct
3051 acaagaagca agctttcagc gagatgggcc acaaggcctc cacctatgcg
3101 ggctgtcagg gtctcacagc cccacgcgtg caaattctgc tctcagaaga
3151 gactagtatg tgttcccgcg aagttattta caccgccctc tcccgagccg
3201 ttcattccat tcactttgtc aactgcggcc caaacaatca ggctttttgg
3251 gccaagctgg agagcacacc ttatctgaaa gctttcctct ccacgctccg
3301 agaagacgcg gcacccgtcg tgaaaccgaa ggaggaagca ccagccccag
3351 ttgatccccc aaagacccac atcccagttg attcagccat gccaatctat
3401 gaggacctac tggatcagat gccggaaaag catgagaggg agatcttttc
3451 agaaaagcat gggcacagca attgcgtgca aacggaggat acctttgtgc
3501 aaatgttcag tcaccagcag gctaaggacg aaacccttct ctgggccacc
3551 atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt
3601 catggagaaa aaacccattg gagatgtgct cttcggtttc tacagagaag
3651 cgatggggtt gcccactgaa cctattgcct ttgaaccaca gctttgggag
3701 tcttgcatcc atgagatcca gcgtacctac ttggcaaagc ccatcaacat
3751 gctgaagaat ggacaggccc ggcaatcccc cgattatgat ccgaatatga
3801 tatctctctt tctgaagtcc cagtgggtga agaaaatgga gaagttgggt
3851 gccttaaaga ttaagcccgg acaaactatt gcctccttcc accaggccac
3901 tgtcatgctg tttggcacga tggccaggta catgaggaga atgcgggaga
3951 tcttccagcc taagaacatt gccatcaact gcgagatgac cccagaagat
4001 ctcacagact gggccgtggg tcctgccggc cagtggaaat tcgccggccc
4051 ctctctagcc aatgacttca cagcattcga tcagtcacaa gatggggcga
4101 tgcttcagtt tgaggtcctt aaagccaagc accacagcat tccagaggat
4151 gtcttggatg cctatctgca tatcaaaaca aactcgaaga tcttcttagg
4201 tacattggcc attatgagac tcacgggcga gggccccact ttcgatgcaa
4251 acactgagtg taacatcgct ttcacccatg caaaatttca gattccgaag
4301 ggtacagccc agctttacgc gggagatgac tcggcaattg atggcaaccc
4351 cacagtgaga gagagtttca gattggttga gcagaaattg aagctgaggt
4401 caaaaccggc gatcgcgatg caggaaaaag gagactgggc ggagttctgt
4451 ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca
4501 cgcgagtctg gtgcttgaaa agaagaaagg caatttgagg aatgtgctga
4551 ggtcttatga gcttgacctg gccctggcat atcagcaccg ggatgaactt
4601 cacgaattac tctctgagga ggagctgcgt cttcactacg acacggttcg
4651 tacgctagtt aagtcaggtg gaggagaggt tttgaaaact tttcttccca
4701 aagatgaatc actttattaa cctcctcatc gaagagggtt acgtccggac
4751 gaacgaaatc ctctcagaca ctctagtcgt ccatgctgta gccggcgctg
4801 gcaagtccac cctcatccgc aaattcatcc accagcatcc acaggcccga
4851 gcgtacaccc acggagtccc tgacccccca aatcttgaag gccgattcat
4901 tcaggctttc aaaaacccag acccaaacca cttcaacatc cttgacgagt
4951 attgtgcaga gcctctgagc ggtagttgga acgtgctcat tgccgacccc
5001 ttacaacata gatctcaagc tcttcgaccc cactacatca aaagagagtc
5051 ccacagacta ggagcagcca cgtgtgaact cctcaccaga gtggggcttc
5101 cagttttgtc caacaaaact gaggatcaag ttgattccca gggcattttc
5151 gaagggcccc ttttcggcac cgtgattgct ctggactcca ctgtcagagc
5201 cctcctcata aagcacggga tttcaccact ctgcccggct gaggtcctcg
5251 ggtctgagtt tgaggaaacg acagtcgtct ctgaggttcc gcttagccag
5301 gtcaggttca agcacgctct gtacatcgct ctcacccgcc acagaaagtc
5351 tctccatgtc cgggctcccc cactccctga caccccccgc cgatcactct
5401 aagccagtgc ttgcagcagt agtaggagtt agtttagctt tagtaataaa
5451 ctctttcttg gtctatagac ttccctcgcc cggggacaat attcatcaac
5501 tgcccttcgg aggttcctac cgggacggaa ctaagagcat ccactacaat
5551 tcgcctaggg cccagagtca gatctcaggt gcatcaccgt tcctaatcat
5601 cctgatactc tcagccctca tctatgccct atcttgtaga ggcggccatc
5651 accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca
5701 tccctgcaca attctgctaa ctgggcactc tgcgaccatt agcggagatt
5751 gtggacccgt cgcaccagag accatcaggg ctcttggaga ctatttaacc
5801 gggcttaggt tttagcatta gtttgattat tctattctta tcctagttaa
5851 aatcatcatg tctacaccat ttcctcaaat cactcaggaa cagatgaacg
5901 ctttcactcc acacgccaca tccaatctcc ttccatcatc ggagcagttg
5951 actaccattg ccagtctctt ggttgctgcc aaggtgcctg ccgcctcaac
6001 cacaaccatt gccctggaac ttgtcaattt ctgttatgac aatggctcca
6051 gtacctacac agtggtggtg ggtccttctt cacttgcaga ggtctcactc
6101 tcccaggttg ctaacatcgt caaagcctca ggcacctctc tccgcaaatt
6151 ctgcagattc tttgccccaa tcatctggaa cctcagaaca gacaagacgc
6201 ccccagccaa ctgggaagcc aatgggttca aaccgacaga gaagtttgca
6251 gccttcgatt tcttcgacgg agtggagaat ccggcggcca tgcagccacc
6301 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca
6351 ctaacaagca ggtgaacctc tttcaggccg cggcacagga caacaacttc
6401 gccagcaact ctgcattcat caccaagggc caattgtcct ccaactcacc
6451 aactattcaa tacctcccac cacctgagtg atttctccac ccagtccaag
6501 cccgttgttt tcgcaatttt gttggggcta tcgagttttc aaaattgctt
6551 tcgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt
6601 tacgcac