Sequence of DPV Bear Canyon virus
Bear Canyon virus strain AV A0070039 Z protein and RNA-dependent RNA polymerase genes, complete cds.
ACC No: AY924390
Dated: 2006-12-02 | Length: 7102 | CRC: 1415572409
ID AY924390; SV 1; linear; genomic RNA; STD; VRL; 7102 BP.
XX
AC AY924390;
XX
DT 02-DEC-2006 (Rel. 90, Created)
DT 02-DEC-2006 (Rel. 90, Last updated, Version 1)
XX
DE Bear Canyon virus strain AV A0070039 Z protein and RNA-dependent RNA
DE polymerase genes, complete cds.
XX
KW .
XX
OS Bear Canyon virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7102
RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.;
RT "The origins and natural host relationships of the North American
RT arenaviruses";
RL Unpublished.
XX
RN [2]
RP 1-7102
RA Cajimat M.N.B., Fulhorst C.F.;
RT ;
RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7102
FT /organism="Bear Canyon virus"
FT /segment="L"
FT /specific_host="Peromyscus californicus"
FT /strain="AV A0070039"
FT /mol_type="genomic RNA"
FT /country="USA:southern California"
FT /db_xref="taxon:192848"
FT misc_feature 1. .60
FT /note="5' non-coding region"
FT primer_bind 1. .19
FT CDS 61. .348
FT /codon_start=1
FT /product="Z protein"
FT /note="zinc-binding protein"
FT /protein_id="AAX99343.1"
FT /translation="MGLRYSREVKQRYGEKELEGRIPITLDMPQTLYGRYNCKSCWFAN
FT KGLIKCSNHYLCLKCLTAMLSRSDYCGICGGILPKKLVFETTPSAPPYTP"
FT misc_feature 349. .421
FT /note="intergenic region; IR"
FT CDS complement(422. .7072)
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AAX99344.1"
FT /translation="MSEYLDELKELIRKWIPDEEMYIEQKTSFLSQVNLRSVVIEGLKL
FT LSIIIEIDSCKKHGCVHNKNKTVNQILRDHRIVGPTLPDVVPDGYRVIGSTIILLEAFV
FT RVSHESFEIKYKSDFEKLMQLSKDLSRCGLTLIPVVDGRSNYYTEHFPDWTIERMRWLI
FT LKITNFLRDNGEEIEELEYSRLVYSLSNMENKNLGLESLKILKEEGLDYKAKLMSVMRD
FT GVNSNMSASECRVEMAKIYDQFSFLRKNGLYKDVYCKTSRTEIINWLKDHKLILLSGET
FT RTAMLDERQCGYCRNHMFRILASLIKNKRHYQSLTNPKKCGSIQSHKKLLSDCNKIKGL
FT KVLNTRRFTLLCLDVIILNSLLELIDAGEIDNEFLVNNHFKSVNDRLVSIDLIIDRLNK
FT KLMSKPNWIGSVKYKMKRTLEIHGLYYVSKWLKQVDIDSWYEFKMMREHSDKCVKPTLK
FT YKKDAARKCGQPEFGSSTILDDEVFLEYLEALSTLSLGLVNSMKTSSAAKFLINDKSNY
FT FGTVQCNECYFQDLDKSYNSLLIYQKTGERSRCYGLMFKSEQFENVYEVGESFYADPKR
FT FFLPIMSSEVILKMCVEMLSWLDWLSEQELKAFKSKLYTLIINILTVPSKRVQVYLQGF
FT RYLIMAFVNELHFKELQNKLKVQPLTISECYVFTLMDDLVHLLLTEAQEENMSKVFRFV
FT LNLSYLCHLVTKETPDRLTDQIKCFEKFLEPKVDFNSVFVNLDSSPHLSGEVEEKFIKD
FT LNRLFSKDLGVEDLKDPGISKELISLCASCFNCGLLPMSKVLKHDPQSPSFTSTALDIS
FT SNKSVVVPKLDEVGETVTQYDYQSLLSSTVVDMAQSFKDKLKYKLDRKSIQFAIFKRLT
FT NMVLKRKTDHDVKDDLDDELSEIVDDDTLRVINDVEANVSECLSKMGKISRAATVGGQN
FT NLGRFEKIDTLKRLWDRESMNFILMETSLHEVKDFDPSIFPIEKYKSMCELVYDSKMKS
FT EFFTDEVLKFCPLDLLVKNLATKCYLEEDFFECFKYILISAGFDNRVGRYDHRSRSRLG
FT FKDEAILIKENSRISSRESNSEAISRRLDKSFFTNSSLRNLCFYSEESPTYRSTVSSSV
FT GKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESLTSECKFSCLNNDAEFERAL
FT LDMKCVVRLSGLAVSMDHSKWGPYMSPAIFNILFSNLNLELNDGVFIDKAPIENLLNWH
FT LHKIVEVPYNVIDAYLKGYTKRRLGLMDRSSTSITEDFIFNWFAKGVVPSHISSVLDMG
FT QGILHNTSDYYGLLTEQFILQCLDFIFDIKSTAYTSSDDEILLSNSPSLKKVDEDSLDI
FT NKCQEVLEFHNYLSSKFNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAALHNV
FT KAKSPHQLAETVDTILDQCIANGVSIEVVKAISRRTNKLITYSGHPKNPFLCVENTDLK
FT DWVDGSRGYRLQRSVESLFNDDDLPLTIRNSCRSLFHRIRSGDIQEEFLINALQTSPDE
FT CLAKMLRLSDVDESTIDKVLEFRWLNLRAHGDLRLVLRTKVMSGTRILDREEVPSLVKS
FT VQSKLSKNFVRGAKKIITDAINKSAFQSSICSGFIGFCKSMGSKCVRDGNGSFQYIKHF
FT LKSIILHSHCEVCKPEMSVFCRAALEELKPFSRPIFWDYFSLTFSNACELGNWVFSNVT
FT IPKRTPTTVNPNFFWPVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSDLNS
FT LKISWIQRIKFLDLCVAMDMSSECLGIISHIMRRKREELYIVKQNELSVAHMRDSSPME
FT AGYQLNSSEICHNFLCQLVFESMLHPVLLTTGQFKKYFWFGEVELLPNEADHDLGQLTQ
FT FVMDCKTLNISRCMSLDDLDVGYVHSSILMGDIYVNFSSFLHLLDWENRRNYKTFDEII
FT LCSREDTIPMEIDFTISHSRKSFKFKYERKTNYHIKSKVLVQKVDIEEAQNQGFDILEL
FT EVHEIECFVSGSQGNHISLDGVGLIPLHPLFSGKEFLDVNKLLIKQDENFESTHSVFSK
FT VKLNFSNHTKDLKNKYSYKLQGPEYNMNPLHLYRGQIMENNFVISRLDVQITSRSVFLA
FT LEALESEDRIPFLISLHIYTRSNNKKENSCFIRMTQSDLCLLIDSYEKEFTEVLKSLSD
FT WMDFGDFALCFSNNLNCIMIADPDGQFKLKGRQCRKVSSASAPLEID"
FT misc_feature 7073. .7102
FT /note="3' non-coding region"
FT primer_bind complement(7084. .7102)
XX
SQ Sequence 7102 BP; 2145 A; 1468 C; 1192 G; 2297 T; 0 other;
ay924390 Length: 7102 02-DEC-2006 Type: N Check: 7960 ..
1 cgcaccgtgg atcctaggct ttactggtca ttgcgcaaag tgaaatcttt
51 tcaagtccca atgggtctta gatattcaag agaggtcaaa caacggtatg
101 gtgaaaaaga actagaaggt agaataccca tcactttaga tatgcctcag
151 actctgtatg ggagatacaa ttgcaaatct tgttggtttg ccaacaaagg
201 attgattaag tgcagcaatc attacttgtg tttgaagtgt ctaacagcaa
251 tgttgagcag gtcagattat tgtggcatct gtgggggcat cctcccaaag
301 aaactggtct ttgaaaccac gccatctgca ccaccctaca ccccatagaa
351 tagggcccag ggcgcacccc ccattggggg gtgcgccctc ggcccctgga
401 ctccgtgggc cacggagtcc attagtcaat ttcgaggggt gctgatgctg
451 atgagacctt tctacactgt ctacctttga gtttgaattg cccatctggg
501 tctgcaatca tgatgcaatt taagttgttg ctgaagcata gagcaaagtc
551 accaaagtcc atccaatccg atagggattt tagtacttca gtgaactcct
601 tttcgtagga atcaatcaat agacagagat cagattgtgt catccttata
651 aaacaagaat tttctttctt gttatttgat cttgtgtaga tatgtaaaga
701 aatcaggaaa ggaatcctgt cttcactttc cagtgcttcc aaagcaagga
751 agactgatct ggaagttatc tgaacatcaa gccttgaaat tacaaagttg
801 ttttccataa tttgccctct gtaaaggtgc aaagggttca tattgtattc
851 aggtccctgt aatttatagg agtacttatt tttcagatct tttgtgtggt
901 tactgaagtt cagtttgacc ttggaaaaga cggaatgggt ggattcaaaa
951 ttttcatcct gctttatgag gagtttgtta acatcaagga attccttgcc
1001 actaaaaaga gggtgtagtg gaatgagacc cactccatca agactgatgt
1051 ggttcccttg agatccacta acaaaacatt caatttcatg tacttcaagt
1101 tcaagtatgt caaacccctg attttgtgcc tcttctatgt cgaccttctg
1151 aaccagaacc ttgcttttaa tgtgatagtt agtttttctt tcatatttaa
1201 atttgaaact cttccttgaa tggcttatag tgaagtcaat ttccattgga
1251 atggtgtcct ctcttgagca caaaatgatc tcatcaaaag tcttataatt
1301 acgcctattt tcccaatcca gtaagtgtaa gaaactagaa aagttcacat
1351 aaatgtcacc cattagaatt gagctatgca catatccaac atctaaatca
1401 tcgagggaca tgcatctgga gatgttgagt gttttgcaat ccattacaaa
1451 ttgagttaac tgccccaggt catgatctgc ttcattaggc aggagttcta
1501 cttcaccgaa ccagaagtac tttttaaatt gacctgtggt taataaaaca
1551 ggatgaagca tagattcaaa aactaactga cagagaaaat tatgacaaat
1601 ttcagatgag tttaattgat accctgcttc cattggtgag gaatccctca
1651 tgtgtgcaac agacagttca ttttgcttca caatgtataa ttcttccctc
1701 ttccttctca ttatgtgcga aataatacct aaacactcac ttgacatatc
1751 catggcaaca cataaatcca agaactttat tctctgtatc caggaaattt
1801 tcagagagtt aaggtctgat aagaatggag caatgtgctc atcaaaaagg
1851 tcaggaaaat ttcttttgat tgagtagagc acatgattca tgtttacttt
1901 gtcctctaat tcagtgtggc tccctggttt tacaggccaa aagaagttgg
1951 gatttactgt tgttggagtt cttttaggaa tggtcacatt cgaaaaaacc
2001 caatttccca attcacaggc atttgaaaaa gtcaaagaaa aataatccca
2051 aaagatgggt cttgagaagg gtttaagctc ctctagtgct gctcgacaaa
2101 agacactcat ctctggtttg cagacttcac aatgcgaatg caagatgata
2151 gatttcaaaa aatgttttat gtactgaaaa ctaccgtttc catctctaac
2201 acatttagaa cccatactct tacaaaatcc tatgaagccg gagcaaatac
2251 tactctgaaa ggctgattta ttaatagcat cagtgattat cttctttgcc
2301 cctctgacaa agttttttga aagcttagac tgtaccgatt taaccagtga
2351 gggcacttct tccctatcta aaattcttgt gcctgacatg accttagtcc
2401 tcaagaccaa tcttaagtca ccatgagctc ttaagttcaa ccatctgaac
2451 tcaagcacct tatcaattgt actttcatca acatcactca acctcaacat
2501 ttttgctaga cattcatcag gtgaggtttg caatgcattg attagaaact
2551 cttcttgtat atcacctgat ctgattctat gaaacaaact tctacatgag
2601 tttctgattg tcaatgggag gtcatcatca ttaaacagtg actccactga
2651 cctctgaaga cggtaacccc ttgaaccatc cacccaatct ttcaggtctg
2701 tattttcaac acaaagaaag ggatttttag gatgtccact ataggtgata
2751 agtttgttag tccttcttga aattgcttta accacttcaa ttgacacacc
2801 gtttgctata cactgatcca aaattgtatc tactgtttca gccaactgat
2851 gtggagattt tgcttttaca ttatgaagtg ctgctgctac aaactttgtg
2901 agcagtggaa cttcctgaga ccagataaag aatctagatt taaactcact
2951 tgcaaaggag cctgccactg ttttggggct tacaaatttg ttgaatttag
3001 atgacaagta attatggaat tcaagtactt cttggcattt gtttatatct
3051 agtgagtctt catcaacttt ctttaaggaa ggagaattac ttaagaggat
3101 ctcatcatca cttgatgtgt aagctgttga cttgatgtca aagataaaat
3151 ccagacactg caagatgaac tgttctgtga gcagaccata ataatctgag
3201 gtattatgca aaattccctg tcccatgtcc agaacagaag aaatgtgcga
3251 aggaacaacc ccttttgcaa accagttaaa aatgaagtct tctgtgatgg
3301 atgtacttga cctgtccatt aagccaagcc ttctctttgt gtaacctttc
3351 aaataagcat caatcacatt ataaggtacc tcaacaatct tatgtaagtg
3401 ccaattcaaa aggttctcaa taggagcttt gtcaataaac accccgtcat
3451 ttaactcaag gttcagatta ctaaaaagta tgttgaagat tgcaggtgac
3501 atatatggcc cccacttgga atgatccatg ctcactgcta gacctgaaag
3551 ccttacgaca cacttcatat ctaaaagagc cctttcaaat tctgcatcat
3601 tattaagaca ggagaactta cactctgagg ttaaggattc aaagtaatct
3651 tcaatcagtc tactagtaag ctttgtgttt agatccccaa cataaagttc
3701 tctattgctt ccaacctgtt ctttgtaaga aagaccaaat ttcagtttcc
3751 caacactgga tgacacagtg gatctataag ttggggactc ttcagaatag
3801 aaacacaagt tcctcaagga agaattggta aaaaaactct tatcaagtct
3851 tctagaaatt gcttctgagt tactttccct tgaactaatt ctggagttct
3901 ctttaattaa tattgcctca tctttaaatc ctaatctaga tctacttctg
3951 tgatcatacc taccaactct attatcaaaa ccagcactta tgaggatata
4001 tttaaagcat tcaaaaaaat cttcctccaa atagcatttt gtggccaaat
4051 tcttcaccag caaatccagt ggacaaaact tcaaaacttc atcggtaaaa
4101 aattcagatt tcattttact atcataaact aactcgcaca ttgatttgta
4151 tttctcaatg gggaatattg aggggtcaaa atccttgacc tcatgtaggg
4201 aagtttccat caaaataaag ttcattgatt ctctatccca tagtctcttc
4251 aatgtatcaa ttttttcaaa cctacctaga ttgttctgac cacccacagt
4301 ggcagctctg gagatcttcc ccatcttgct tagacattca gagacattag
4351 cttctacatc atttatgact ctaagtgtat catcatctac aatttctgac
4401 agttcatcat caagatcatc ttttacatca tgatctgtct tcctctttaa
4451 gaccatgttt gttaagcgtt tgaaaattgc aaattggata ctttttctat
4501 caagtttata cttcagtttg tctttaaagg actgagccat atcaacaaca
4551 gtggaagaca gtaatgattg gtaatcatat tgtgttactg tttcacctac
4601 ttcatctaac ttcggaacga caacactttt gttactagaa atatccaagg
4651 ctgtactagt gaatgatggt gactgtgggt catgtttaag gactttgctc
4701 attggcagca aaccacagtt gaagcatgat gcacataatg aaatcagttc
4751 ttttgaaatt ccagggtctt tcaaatcctc aacacccaaa tctttggaga
4801 aaagtctatt gagatccttg ataaactttt cttccacctc tcctgacagg
4851 tgtggtgatg aatccaaatt aacaaaaaca gaattgaagt caacttttgg
4901 ctctaaaaac ttctcaaaac atttgatttg atcagtcaaa cgatctgggg
4951 tttcttttgt aactagatgg cataaatatg acaagtttaa aacaaatcta
5001 aacaccttag acatgttttc ctcttgggct tctgttaata agagatgaac
5051 taaatcatcc attagtgtaa acacataaca ctctgaaatt gtcaaaggtt
5101 ggacctttag cttattttgt aattccttaa agtgtagttc attaacaaac
5151 gccattatta agtatctaaa cccctgcagg taaacctgaa ctcgcttact
5201 tggaacagtt agtatattaa ttattagagt gtagagtttt gacttaaaag
5251 ccttcaactc ttgctcactc agccagtcta gccatgataa catctcaaca
5301 cacatcttta agatgacttc tgaactcatt atgggcaaga aaaatctttt
5351 aggatctgca taaaagcttt caccaacctc atatacattc tcaaattgtt
5401 cactcttgaa catcagcccg taacaccttg accgttcacc agttttctga
5451 taaattagca aactattata acttttatca agatcttgaa aataacactc
5501 attgcattga actgtaccaa agtaattgct cttatcattg attagaaatt
5551 ttgcagctga acttgttttc attgagttga ctaaaccaag actcaaggtt
5601 gatagcgcct caagatactc aaggaaaact tcatcatcta aaattgtgct
5651 actaccaaat tcaggttgac cacattttct tgcagcatct tttttgtatt
5701 tcaaggttgg ctttacacat ttatctgagt gctctcgcat catcttaaac
5751 tcataccaag aatcaatatc aacctgttta agccatttag atacatagta
5801 cagcccatgt atctcaagtg tcctcttcat tttgtatttg acactaccaa
5851 tccagtttgg cttactcatt agttttttat tcaatctgtc tattatcaaa
5901 tcaattgaca ccagtctatc attcacactt ttaaaatggt tgttaaccaa
5951 gaactcatta tcaatttccc ctgcatctat caattcgagt agactgttaa
6001 gaatgatgac atcaaggcat aggagtgtaa atcttcgagt atttagtact
6051 tttaaacctt taatcttgtt gcaatcagaa agtagtttct tatgactttg
6101 tatactgcca cattttttag ggttggtgag actttggtag tgtcttttat
6151 tcttgatcag acttgccaat attctaaaca tgtggtttct acagtaaccg
6201 cactgcctct cgtccagcat ggcagtcctg gtctcaccac taagcaggat
6251 taatttatga tccttcaacc agttgataat ttctgttcgt gatgtcttac
6301 aatacacatc tttatataat ccattttttc tcaagaaaga aaattgatca
6351 taaattttgg ccatttcaac tctgcattca gaggccgaca tgttggagtt
6401 gacaccatct ctcatcactg acatcaattt tgctttgtaa tctaagcctt
6451 cttctttcaa tatcttcaga gactcaaggc ccaagttttt attttccata
6501 tttgagagac tgtacacaag tctagagtat tctagttcct caatctcttc
6551 cccgttgtct cttaggaagt tagttatttt cagtatcaac catctcattc
6601 tctctattgt ccaatctgga aagtgttctg tataataatt tgatctacca
6651 tctacaacag ggatgagtgt tagaccacat ctactaaggt ctttagataa
6701 ctgcatcaac ttctcaaaat ctgatttgta cttgatctca aaggattcat
6751 gacttaccct aacaaaagcc tccaacaaga ttatcgttga tccaatcact
6801 ctgtaaccat caggcacaac atcgggtaga gtaggtccca caatcctatg
6851 atctctcaag atctgattca ctgttttgtt cttgttgtgc acgcatccat
6901 gcttcttgca ggaatctatc tctataataa ttgacaataa ttttaggcct
6951 tcaatgacta ctgatctgag attgacttga gacaagaaac tggtcttctg
7001 ttctatatac atctcttcgt caggtatcca tttcctaatg agttccttca
7051 attcatcaag gtattcactc atgataaagg aatgcctagg atccacggtg
7101 cg