Sequence of DPV Bear Canyon virus
Bear Canyon virus strain AV A0070039 glycoprotein precursor and nucleocapsid protein genes, complete cds.
ACC No: AY924391
Dated: 2006-12-02 | Length: 3339 | CRC: -1646276738
ID AY924391; SV 1; linear; genomic RNA; STD; VRL; 3339 BP.
XX
AC AY924391;
XX
DT 02-DEC-2006 (Rel. 90, Created)
DT 02-DEC-2006 (Rel. 90, Last updated, Version 1)
XX
DE Bear Canyon virus strain AV A0070039 glycoprotein precursor and
DE nucleocapsid protein genes, complete cds.
XX
KW .
XX
OS Bear Canyon virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-3339
RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.;
RT "The origins and natural host relationships of the North American
RT arenaviruses";
RL Unpublished.
XX
RN [2]
RP 1-3339
RA Cajimat M.N.B., Fulhorst C.F.;
RT ;
RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3339
FT /organism="Bear Canyon virus"
FT /segment="S"
FT /specific_host="Peromyscus californicus"
FT /strain="AV A0070039"
FT /mol_type="genomic RNA"
FT /country="USA:southern California"
FT /db_xref="taxon:192848"
FT misc_feature 1. .56
FT /note="5' non-coding region"
FT primer_bind 1. .19
FT CDS 57. .1508
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="GPC"
FT /protein_id="AAX99345.1"
FT /translation="MGQLVSFIGEIPAIVHEALNVALIAVSIIAIMKGLINIWKSGLFQ
FT LIMFLILAGRSCSISIGHHLELQHFIINSTSLLPSMPTLCRINATNSLIRGPFSAQWGL
FT DIFIGDLTILVNPEPGSKTKRMTATNITGCFPNNEDPDSVAQVLSWFFRGVHHDFHLDP
FT TILCDESVTVFRIQMNLTERMYCDRIVSKLARLFGSFGDYCSKVGKKLVIIRNVTWSNQ
FT CHEDHVGSMQLILQNAHNQVMRFRKLQNFFSWSLVDSAGNSMPGGYCLEKWMLVASELK
FT CFGNTAVAKCNINHDSEFCDMLRLFDYNKKAIVNLQDKTKAQLDSLIDAVNSLISDNLI
FT TKNKIRELMNIPYCNYTKFWYVNHTGLNVHSLPKCWHVRNGSYLNESDFRNEWIIESDH
FT LVSEILAKEYEERQKRTPLSLVDLCFWSTLFYTASIFLHLLHIPTHRHIIGEGCPKPHR
FT LTSDSLCACGFFQLKGRPTRWARIP"
FT misc_feature 1509. .1590
FT /note="intergenic region; IR"
FT CDS complement(1591. .3279)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /note="N"
FT /protein_id="AAX99346.1"
FT /translation="MSDQVVHSFRWTQSLRRGLSNWTCPVKADVLNDTRALLSGLDFAK
FT VASVQRMMRRDKRDESDLTSLRDLNKEVDSLMTMKSTQKNMFLKVGSLSKGELMELSGD
FT LNKLKDKVQRTERPPGSGGQYQGNLTTTQLTRRGELLQFIGIQKAGRVGMNGVVKVWDV
FT KDSSLMINQFGSMPALTISCMAEQGGETLNDVVQGLTDLGLLYTAKYPNLNDLEALSEK
FT HPCLKVITQEESQINISGYNLSLSAAVKAGACLIDGGNMLETIKIDTSTFTTVIKTLLE
FT VKARERMFVSSVPGQRNPYENILYKLCLSGEGWPYIASRSQIKGRAWDNTVVEFDSAPP
FT RAPVPVRNGGAPLLGPLRPELEDQVRKGVEGLSPNLTTWIDIEGPPNDPVELAIYQPET
FT QKYLHCYRRPNDIKSFKDQSKYCHGILLKDVENARPGLISTIIRYLPKSMVFTAQGEDD
FT IKRLFDMHGRQDLKIVDVKLSAEQSRVFEELVWKKFEHLCDRHKGIVIKSKKKGSKPAS
FT TNAHCALMDCIMFNAVLVGFVADEKPKRLLPIDILFREPDTTVVL"
FT misc_feature 3280. .3339
FT /note="3' non-coding region"
FT primer_bind complement(3321. .3339)
XX
SQ Sequence 3339 BP; 914 A; 736 C; 673 G; 1016 T; 0 other;
ay924391 Length: 3339 02-DEC-2006 Type: N Check: 6204 ..
1 cgcacagtgg attctaggcg atttttgttc acgcttcctg tttctctatc
51 atttcaatgg gacagcttgt ctccttcatt ggagaaatac cagccattgt
101 gcacgaagcc ctgaatgtag ctttaatcgc agtaagtatc attgcgatta
151 tgaagggcct cataaatatc tggaaaagtg ggttattcca attgataatg
201 ttcctcatac ttgctgggag atcctgttca atttccattg gacaccatct
251 ggaacttcaa catttcataa taaacagcac atcactcctc ccttctatgc
301 ccacactgtg cagaatcaat gccaccaact ccctcataag aggtccattt
351 tctgcgcagt ggggccttga tatattcatt ggtgacctca ccattttagt
401 aaaccctgag ccaggtagca agacaaaacg gatgactgca accaacatta
451 ctgggtgttt cccaaataat gaagatcctg actctgtagc acaggtccta
501 agttggtttt ttagaggtgt gcatcatgat ttccatttag acccaacaat
551 tctttgtgat gaaagtgtca ctgtcttcag aatccaaatg aacctaactg
601 aaagaatgta ctgtgatagg attgtttcaa aactagcaag actttttggt
651 tcctttggag actattgttc aaaggttgga aagaaattgg ttataatcag
701 aaatgtaacc tggtccaatc agtgtcatga agatcatgtc ggctccatgc
751 aactcattct acaaaatgcc cataatcaag tcatgagatt cagaaaactg
801 caaaatttct tctcttggtc attggttgac tctgcaggaa acagtatgcc
851 tgggggatac tgtttggaga aatggatgtt ggtagcaagt gaattgaagt
901 gctttggtaa tacagctgtt gctaaatgta acatcaatca tgattctgaa
951 ttctgtgata tgttgaggct ctttgattat aataaaaagg caattgttaa
1001 ccttcaagac aaaacaaaag cacaacttga ttcacttatt gatgctgtta
1051 attctttgat ttctgacaat ctgataacta aaaataaaat aagagaactc
1101 atgaatattc cttattgcaa ctacacaaag ttttggtatg tgaaccacac
1151 aggtctaaat gttcattctt tgcctaaatg ttggcatgtg aggaatggca
1201 gttacctgaa tgagtcagac tttagaaatg agtggatcat cgagagtgat
1251 catcttgttt ctgagatatt agctaaagag tatgaagaaa ggcagaagag
1301 aacaccactg agtcttgttg acctctgttt ctggagtacc ctattctata
1351 cagcatcaat cttcctacat cttctgcaca ttcccaccca cagacacatc
1401 atcggcgagg gctgtcctaa acctcacaga ctgacatctg attcactctg
1451 tgcatgtggg ttctttcaac tgaaggggag gccaaccaga tgggcaagga
1501 taccttaaag cagatgaaat agaatagagt cgagactcgg cctccattgc
1551 tgcaccccaa tggggtgcag caatggaggc ctctcaatgc ttagaggacc
1601 acagttgtgt ctggttctct gaagagaatg tcaataggaa ggagtctttt
1651 gggcttctcg tctgccacaa atcccaccag aactgcattg aacatgatac
1701 aatccatcaa tgcacagtga gcatttgtag atgcaggttt tgagcctttc
1751 tttttgcttt tgatcacaat tcccttatgc ctgtcacaaa gatgttcaaa
1801 tttcttccaa acaagttcct caaagactct agattgctct gcacttagtt
1851 tcacatcaac aatctttaaa tcttggcgtc cgtgcatatc aaaaagtctc
1901 ttaatgtcat cttcaccttg agctgtgaag accatagact tgggaaggta
1951 tcttatgata gttgagatca atcctggtcg agcattctcc acgtccttca
2001 acaatatccc atggcagtac ttgctctgat ctttgaaaga cttaatgtca
2051 tttggtcttc gataacaatg taagtacttt tgagtctcag gttggtagat
2101 tgccagttct actgggtcat tgggtggtcc ttcaatgtca atccaagttg
2151 tgaggtttgg agataggcct tcgactccct ttcggacctg gtcttctaat
2201 tccggcctta atggtcctag taagggtgca cctccgtttc tcactggaac
2251 aggggccctt ggtggagcac tatcaaactc aaccacagtg ttatcccatg
2301 ctcttccctt tatttgtgaa cgagaagcta tgtaaggcca tccttctcca
2351 gagaggcaca atttataaag aatgttctca taagggttcc tttgaccagg
2401 aaccgaactt acaaacattc tttcccttgc tttcacttct aggagtgttt
2451 tgataactgt ggtgaaagtg gatgtgtcaa tcttgatggt ctcaagcata
2501 tttcctccat ctatcaagca tgcacctgcc ttcacagctg cagacaaact
2551 caagttataa cctgagatgt taatctgtga ctcctcttgg gtgattacct
2601 ttaagcaagg gtgtttttct gagagagcct caagatcatt gaggtttggg
2651 tattttgctg tataaagtag acccaaatct gttaatcctt gaacaacatc
2701 atttagggtt tcaccaccct gttctgccat acaagagata gtaagtgcag
2751 gcattgaacc aaactggttg atcataagtg aggaatcttt gacatcccat
2801 actttcacaa ccccgttcat cccgactctc cctgcctttt gaataccaat
2851 gaattgtagt agttcacctc tccttgtgag ttgagtggtg gtgagattgc
2901 cctggtactg accacccgaa cctggtggtc tctcagtcct ctgcaccttg
2951 tctttcaact tattgagatc accggacaac tccattagtt ctcccttgga
3001 gagtgagcca acctttagga acatgttttt ttgtgttgat ttcattgtca
3051 tcaatgaatc aacttcttta ttaaggtctc tcaaacttgt aagatcactt
3101 tcatctctct tgtccctcct catcattctc tgaacactag ccacctttgc
3151 aaaatccaat ccagacagta aagccctcgt atcattgagg acgtcagcct
3201 tcactggaca tgtccaattg gagagtcctc tcctgagtga ctgagtccag
3251 cgaaaggagt gcaccacctg atcagacatg atgaaggtag aagttgatgt
3301 tgatgcgtag aatctccaaa gcctaggatc cactgtgcg