Sequence of DPV Tamiami virus
Tamiami virus strain W 10777 segment L, complete sequence.
ACC No: AY924393
Dated: 2007-12-02 | Length: 7141 | CRC: 712722737
ID AY924393; SV 1; linear; genomic RNA; STD; VRL; 7141 BP.
XX
AC AY924393;
XX
DT 02-DEC-2007 (Rel. 94, Created)
DT 02-DEC-2007 (Rel. 94, Last updated, Version 1)
XX
DE Tamiami virus strain W 10777 segment L, complete sequence.
XX
KW .
XX
OS Tamiami virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7141
RX DOI; 10.1016/j.virol.2007.05.031.
RX PUBMED; 17624390.
RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.;
RT "Principal host relationships and evolutionary history of the North
RT American arenaviruses";
RL Virology 367(2):235-243(2007).
XX
RN [2]
RP 1-7141
RA Cajimat M.N.B., Fulhorst C.F.;
RT ;
RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7141
FT /organism="Tamiami virus"
FT /segment="L"
FT /specific_host="Sigmodon hispidus"
FT /strain="W 10777"
FT /mol_type="genomic RNA"
FT /country="USA:Florida"
FT /db_xref="taxon:45223"
FT misc_feature 1. .79
FT /note="5' non-coding region"
FT primer_bind 1. .19
FT CDS 80. .367
FT /codon_start=1
FT /product="Z protein"
FT /protein_id="AAX99348.1"
FT /translation="MGLRYSKEVRDRHGDKDPEGRIPITQTMPQTLYGRYNCKSCWFAN
FT KGLIKCSNHYICLRCLTSMLNRTDYCEICGEVLPKRLTFETTPTAPPYTP"
FT misc_feature 368. .445
FT /note="intergenic region; IR"
FT CDS complement(446. .7111)
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AAX99349.1"
FT /translation="MSECLTYFNELKDLVRKWVPDEDTYVEQKTVLLSQVNFSSIVTEG
FT LKLLSTLIEVDSCVKHGCIHNRSKTVNQILYDHRIVGPTLPDVVPDGYRVSGSTLILLE
FT TFVRVNQESFECKYRHDFEKLMQLSKDLAKCGLTLVPVIDGRSSYYIERLPDWVIERMR
FT WLLLRIMSNLRDSGEKIEEMEYERLVHSLSNMENQNLGLESLASLREEGLDYKTRLTKT
FT LKEGIYSNMTTSECRVGIAKLYDHFCLLRDSGQYEDVYTTTSRSEMITWLKTHELVQMS
FT SSERETLIEAETCKFCQIHMYAVLKDLVLLRKGWKGSRCRDANEILAHKSLLSDCNKIK
FT GLKVLNTRRNTLLCLDIIVLNSLINLIKLQYTDLQYLINNHFKSVNDRLVSVDLIINKL
FT DKKLTSDPNWLCKLRTKIGHKLKIYDLDHVISWLRPIEVSHWYEFKLERDNSGECVKPT
FT IKYKKSGVGDCQGEDCNKDVITDDSTFSDYLDALSTLSMGLMNSMKTSSATKLVVNDER
FT NYFGTVQCDECYFQDLDINYGTTLIYQKTGERTRCYGLMSKEGGGPDVYKVGKSFYADP
FT KRYFLPIMSSEVILKMCREMLSWLDWLSEKEMMDVRTKLYTLVISILTVPSKRVQIYLQ
FT GFRYFIMAYVNEFHVKELVCKLKVKPLTRAELSVFTQMDDLVALLLTGTSEEHMTKSFK
FT FILNLSYLCHLITKETPDRLTDQIKCFEKFLEPKLTFNSVILNLDSSPQLTEGTEEKII
FT GDLKKLFSKDLGVLDLKEPGVSKEVLSLCSSCFNNGMLSLPKVLSRDPQSPSFTSTALD
FT ISSNKSVVVPKLNEVGETITQYDYQSLLSSVVVEMAQSFKDKLRFKLDRRSLQYAIYKR
FT LTNMVSKNEFRSKDDPNDSGILEDIEDLVDEGTHKLINEIEANVSDCLSKMSSGCNKSN
FT QSSKGLKKFEKVDLLQKLWSREYMSLILSETSFHEVKDFDPSLLPSESYQEMCDAVYDS
FT VYRNEFFTEKFLKLCPLELLIKNLATKHYEEGDYFECFKYLLIGAGCDNRVGRFDHRSR
FT ARLGFKDTATLVKEESRISSRESNSEAISKRLDKSFFTNSSLRNLCFYSEESPTYRSSV
FT SSSVGKLKFGLSYKEQVGSNRELYIGDLNTKLTSRLIEDYFESLTSECRFSCLNNDSEF
FT ERALLDMKSVVRLSGLAVSLDHSKWGPYMSPAIFNALFSNLDLQLKDGGLIDKSPIENL
FT LNWHLHKIVEVPYNVVEAYLKGYTKRSLGLMDRSSSSMTEDYFFRQFAKGVVPSHITSV
FT LDMGQGILHNASDYYGLLTEQFITLCLELCFDVKMTAYTSSDDEIMLSNSYSLKRESDD
FT DLLDMEKCKEILEFHYYLSSKLNKFISPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAA
FT ALHNVKAKSPHQLAETIDTILDQCAANGVSIEIINELSKRTNRLISYSGHPVDPFLCVF
FT TTDLKDWVDGSRGYRLQRSIESIINSEEILSTIRDSCRQLFYMIRSGRIQEEYLISALQ
FT SSPDDCLRQMLKITGTNDSLIEEALTTRWLNLRAFGDLRLVLRTKIMTGTRILDKEEVP
FT SLIKSVQSKLSKNFVRGAKKIITDAINKSAFQSSICSGFIGLCKSMGSKCVRDGSGGFI
FT YIKDLLKKIDRHTNCEVCCPLLSVFCEHSLRQVAPYSRPLLWDYFSLTFSNACELGNWV
FT FSKVELPRPPLGSMNPNFFWPVKPGSHSELEDKVNMNHVLYSIKRNFPDLFDEHIAPFL
FT SDLNSLKVSWVQRIKFLDLCVAMDMSSECLGIISHIMRKRREELYIVKQEELSVCHIRE
FT SCSLEKGLQLNSVEICQNFLTQLLFESMLNPVLLSTSQFKKYFWYGEVEFLPNDADHDL
FT GQLTQFIMDCKLLNISRCMCLDDLDVGYVHSKIELSQVFINLSTFINLVDWENRESYQS
FT FDEVLIHSNADHIPLEIGIILSHTRKSFKFRYERKTNYYVKCGITIQKSEISSFSTTLS
FT DGFELHVEEIDCYVSGSEGDHISLDGVGLVPLHPLFSGKEALDLNKLLSDQDIEFKQIS
FT LVFSKVKLDFKDHVKDLKNKFSYKLQGPEQGLEPLHLDKGQIMERNTVVSRLEVPVTSR
FT SLFLALEALDPGNRPRFLSSLHEYMRKRPGKKDPCFVRMTQQDLCLLVELYEAAFMQVL
FT SAVSDWIEFGCFALCFSKTLNCIMIADDGGDYRLKGRPCKTLSAQKTLTDIE"
FT misc_feature 7112. .7141
FT /note="3' non-coding region"
FT primer_bind complement(7123. .7141)
XX
SQ Sequence 7141 BP; 2080 A; 1612 C; 1257 G; 2192 T; 0 other;
ay924393 Length: 7141 02-DEC-2007 Type: N Check: 6338 ..
1 cgcaccgtgg atcctaggca gttacagact ctgcgcttag aggctcaaat
51 accactactt taggacctta ttttcaccaa tgggtctgag atactccaaa
101 gaggtcaggg accgtcacgg cgacaaagac ccagaaggga ggatcccaat
151 cactcaaacc atgcctcaga cactgtacgg caggtacaac tgtaaatcat
201 gttggttcgc caataagggg ttgatcaaat gtagcaacca ttacatatgt
251 ctcaggtgcc taacctcaat gttaaacagg actgactact gcgagatctg
301 tggtgaagtg ctgccaaaga ggctcacctt tgagacgacc ccaacagctc
351 caccctatac tccctgaaca cacatggggc ccagggcaca cccccaatgg
401 gggtgtgccc tcggggcccc cccgggcccc tcgggcccgg ggagtctact
451 cgatgtcggt gagtgttttc tgtgcagata gggtcttgca gggcctacct
501 ttcagcctgt aatccccacc gtcatcggct atcataatgc agttgagagt
551 cttgctgaaa cacaaagcaa aacagccaaa ctctatccaa tctgagactg
601 cactaaggac ttgcatgaaa gcagcctcat atagttcaac caataggcac
651 aagtcctgtt gtgtcattcg aacaaaacag gggtctttct tccctggcct
701 tttcctcatg tactcatgta gggatgaaag aaatctaggt ctattaccag
751 ggtccagagc ttctaaggca aggaagagtg atcttgatgt cactggtacc
801 tcaagtcttg aaacaacagt attcctttcc attatctggc ccttgtccag
851 atgtaagggt tccaggcctt gctctggacc ctgtaacttg taagagaatt
901 tattctttag gtctttaaca tggtccttga aatcaagttt cacctttgag
951 aatacaagcg aaatttgctt gaactcaatg tcttgatcac ttaaaagttt
1001 attgaggtcc agtgcctcct tccctgagaa cagagggtgc agtgggacca
1051 aaccaactcc gtccagactt atatggtccc cctcagagcc actcacatag
1101 caatcaatct cctcaacatg aagttcaaag ccatcagaca aggttgtgct
1151 aaatgatgat atttcactct tttgaattgt gattccacat ttcacataat
1201 agttcgtctt cctttcatac ctaaatttaa agcttttcct tgtgtgtgaa
1251 agaattattc caatctcaag gggtatgtga tcagcattcg aatgaatcaa
1301 aacttcatca aagctttgat aactttctct attttcccaa tcaaccaagt
1351 tgataaaagt tgataaattt atgaaaactt gtgataattc aattttacta
1401 tgaacgtatc ctacatcgag atcatcaaga cacatacacc ttgatatgtt
1451 caacaatttg caatccatga tgaattgggt tagttgccct aaatcatgat
1501 cagcatcatt tgggagaaat tcgacttcac cataccagaa atactttttg
1551 aactggcttg tactcagcag cactgggttc aacatggatt caaataacaa
1601 ttgtgtcaga aaattctgac atatctccac agagttcaac tgaagaccct
1651 tttccaacga gcaagactct cgtatatgac atacagacaa ctcctcttgt
1701 tttacaatat acaattcttc tcttctcttc ctcataatat gagagataat
1751 acccaaacat tcactagaca tatccatggc aacacacagg tctaaaaatt
1801 ttattctctg aacccaactt acctttaatg agttcaggtc agataaaaat
1851 ggagcaatat gctcatcgaa gagatcagga aagttcctct tgattgagta
1901 taggacatgg ttcatattga ctttgtcttc taactcagag tggcttccag
1951 gcttcacagg ccaaaaaaag ttcggattca ttgaccccaa agggggtcta
2001 ggaagctcaa cctttgagaa gacccaattt cccaactcac atgcattaga
2051 aaatgttagt gagaaatagt cccaaaggag tggccttgaa tacggcgcca
2101 cctgtcttaa actatgttca cagaagacac ttaataatgg gcagcacact
2151 tcacagtttg tatgcctatc aatcttcttc aataaatctt taatatatat
2201 aaatcctcca gatccatccc tcacgcattt tgaacccatg cttttgcaca
2251 gcccaatgaa cccagaacag atgctacttt ggaaggcaga cttgtttatt
2301 gcatctgtta ttatcttttt agcccctctg acaaagtttt ttgaaagttt
2351 tgattggact gacttaatca atgaaggcac ctcttcttta tctaaaattc
2401 tagttcctgt catgattttt gttcttaaca ccagtcttaa atcaccaaaa
2451 gcccttaaat tcaaccacct cgttgtaagt gcctcttcaa tcagagagtc
2501 attcgttcct gttatcttta gcatctgtct caagcaatca tctggtgatg
2551 attggagtgc acttattaag tattcttcct gtattcggcc tgatcttatc
2601 atgtaaaaca gttgtctgca ggaatcccta attgtggaga gtatctcttc
2651 actgttgatg atggattcta tcgacctctg caatcggtaa ccccttgaac
2701 catcaaccca atctttcaaa tctgtcgtaa acacacacaa aaatgggtca
2751 actgggtgcc cactataaga gatcaatctg tttgtcctct ttgataattc
2801 attaatgatc tctattgata caccattggc tgcacactga tccaagattg
2851 tgtcaatagt ttcagcaagc tggtgaggtg atttagcttt cacattgtgc
2901 aatgctgcgg caacaaattt tgtcagtaag ggaacttctt gagaccaaat
2951 aaaaaatctg gacttaaact cacttgcaaa cgaaccagca actgttttgg
3001 ggctgataaa tttattaagc tttgaagata aataataatg aaattcaaga
3051 atttctttac acttttccat atctaataga tcatcatcgg actccctttt
3101 tagagagtag gagttgctta acatgatctc atcatcactt gatgtgtatg
3151 cagtcatctt cacatcaaag cagagctcta aacacagggt gataaattgc
3201 tcagtcaaca acccataata atctgaagca ttgtgtagga ttccttgccc
3251 catatctaag actgatgtaa tgtgagaagg aaccacacct tttgcaaatt
3301 gtctgaagaa ataatcttca gtcattgaac ttgatgacct atccatcagg
3351 cctagacttc tttttgtata acctttcagg taagcctcca caacattata
3401 aggaacctca acaatcttgt gtaaatgcca attaagtaaa ttttcaattg
3451 ggctcttatc aataaggcct ccatctttta gctggagatc caggttagaa
3501 aagagtgcat taaatattgc tggtgacatg tacggccccc attttgaatg
3551 gtcaaggctc actgccagac cagaaagacg gaccacggat ttcatgtcta
3601 ggagtgctct ctcaaactct gagtcattat tcagacatga gaatctgcat
3651 tctgatgtta aggactcaaa gtaatcctct attagcctac tagtgagctt
3701 tgtgtttaaa tcaccaatat aaagctccct attgctacct acctgttctt
3751 tatacgacaa gccgaattta agtttcccta cgctggatga aactgaggat
3801 ctataagttg gggactcttc ggaataaaaa cacaaatttc taagggagga
3851 gttggtaaaa aaactcttgt ctaacctttt ggaaatagct tctgaattac
3901 tttctctcga acttattctt gattcttctt taacaagtgt ggctgtgtcc
3951 ttaaaaccga gtctagctct gcttctatga tcaaacctac caactctgtt
4001 atcacaacct gctcctatta gcaaatattt gaagcactca aagtaatctc
4051 cttcctcata gtgttttgtt gctaagttct tgatcaacag ttccaatggg
4101 cagagtttta aaaacttttc agtgaagaac tcatttctat aaacactatc
4151 ataaacagca tcacacatct cctgataact ttcactagga agcaatgaag
4201 ggtcaaagtc cttcacttca tggaaagagg tttcactaag tatgagagac
4251 atatattccc tggaccataa cttttgaagc agatcaactt tctcaaattt
4301 cttgagaccc ttagaacttt ggttggattt attgcaccct gagctcattt
4351 tgcttaaaca atcagaaaca ttagcctcaa tttcatttat cagcttatgt
4401 gttccctcgt caactaaatc ttcgatgtct tcaagtatcc cactatcatt
4451 tggatcatct tttgatctaa attcattttt cgacaccatg ttggttagac
4501 gtttgtaaat ggcatattgt aaacttctcc tatccaactt aaacctcagc
4551 ttgtccttaa aagactgggc catctcaaca acaactgacg atagaaggct
4601 ttgatagtca tactgtgtta ttgtctcccc aacctcattc aatttcggga
4651 caacaacgct cttattgcta gatatgtcta aagctgtact tgtgaaagaa
4701 ggtgattgtg ggtcacggct taacactttc ggcagagaaa gcataccatt
4751 attaaaacaa gaagaacaga gtgacaacac ttcctttgag acccctggtt
4801 ccttcagatc aagaacacca aggtccttag aaaacaattt ctttagatcg
4851 cctattattt tttcctcagt tccctctgtt aactgagggg atgagtctag
4901 gtttaggatg actgaattga aggttaactt aggctccaga aacttttcaa
4951 aacacttgat ttgatctgta agccggtctg gcgtttcctt tgtaataagg
5001 tgacataaat aagacagatt tagaataaat ttaaatgact ttgtcatatg
5051 ttcctctgaa gtcccagtta gcagcaaggc gactaaatca tccatctgtg
5101 tgaagacact cagctcagcc ctggttaatg gcttcacttt taacttgcaa
5151 actaattctt taacatgaaa ttcattgaca taagccatga taaaatatcg
5201 aaaaccttgc aaataaatct gaactctttt gctgggaact gtcaatatac
5251 ttatgaccag ggtatatagt ttagtcctca catccatcat ttctttttct
5301 gaaagccagt caagccaaga caacatttct cggcacatct tgaggatgac
5351 ctcagaactc ataattggta aaaaatacct cttagggtct gcatagaagc
5401 tcttgcctac cttataaaca tcagggccac ctccctcctt tgacatcaga
5451 ccataacacc tcgtcctttc gccggtcttt tgatatataa gagtggttcc
5501 ataattgatg tccaagtcct gaaaataaca ttcatcacat tgaactgtgc
5551 caaagtaatt tctctcatca tttaccacca acttggttgc tgaacttgtc
5601 ttcattgagt tcataagacc catactcaaa gttgataatg catctaaata
5651 atcactgaag gtggagtcat ctgttatcac atctttgtta caatcctcac
5701 cctgacaatc ccctacacca ctcttcttgt acttgattgt gggtttcaca
5751 cattcaccgg aattatccct ttccaacttg aattcatacc aatgggacac
5801 ctcaataggc ctcagccatg atataacgtg atcaagatca tatattttaa
5851 gtttatgccc tatcttggtt ctcagtttac acagccagtt tgggtctgat
5901 gtcagttttt tatcaagttt attaattatc aagtcaacag aaacaagcct
5951 gtcattgaca cttttgaaat ggttgttgat gaggtattgg aggtctgtat
6001 actggagttt aattaaattt atcaaactgt tgaggacaat tatatcaagg
6051 caaaggagtg tgttccgtct tgtgttaaga accttcaatc cctttatttt
6101 gttgcaatct gacaaaagac tcttgtgtgc caaaatctca ttggcatctc
6151 tgcacctgga gcccttccac ccctttctaa gtagcacaag atctttcaga
6201 acggcataca tatgaatttg acaaaattta caagtttcag cttctattaa
6251 agtctccctt tcactgcttg acatttgcac caattcatgg gtctttaacc
6301 atgtgatcat ctcagatctt gatgttgtgg tgtatacatc ttcatattgt
6351 ccgctgtctc gtaaaagaca gaagtgatca taaagctttg caatacctac
6401 tctgcattct gaagtggtca tgttcgaata gatcccctct tttagtgttt
6451 ttgttaatct tgtcttgtaa tccagccctt cctcccttaa acttgcaagt
6501 gattcaagac ctaagttctg attctccatg tttgacaagc tgtgtactaa
6551 ccgttcatac tccatctctt ctattttctc accactgtct ctcaaattgc
6601 tcattatcct caataacaac cacctcatcc tttcgataac ccagtcaggt
6651 aagcgttcaa tgtagtagct tgatctgcca tcaatcacag gtacaagggt
6701 caagccacac ttggctagat ctttggacaa ttgcatcagt ttttcaaaat
6751 catgtctata cttgcattca aaggactctt gatttactct aacgaatgtc
6801 tcaagtaaga tcagtgtcga acctgacact ctgtagccat cgggaacaac
6851 gtcaggaagt gttggaccca ctattctatg gtcataaagt atctggttaa
6901 cagtcttgct tctgttgtgg atgcagccat gtttcacaca agagtcaacc
6951 tctatcagag ttgagaggag cttcaaccct tcggtcacaa tggaggaaaa
7001 attgacctgt gagagtaaaa ccgtcttttg ctccacatag gtgtcctcat
7051 ctggtaccca cttccttaca aggtccttca gttcattaaa gtaggtcaag
7101 cactcagaca tgatcaagga atgcctagga tccactgtgc g