Sequence of DPV Whitewater Arroyo virus
Whitewater Arroyo virus strain AV 9310135 segment L, complete sequence.
ACC No: AY924395
Dated: 2007-12-02 | Length: 7132 | CRC: -826746940
ID AY924395; SV 1; linear; genomic RNA; STD; VRL; 7132 BP.
XX
AC AY924395;
XX
DT 02-DEC-2007 (Rel. 94, Created)
DT 02-DEC-2007 (Rel. 94, Last updated, Version 1)
XX
DE Whitewater Arroyo virus strain AV 9310135 segment L, complete sequence.
XX
KW .
XX
OS Whitewater Arroyo virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7132
RX DOI; 10.1016/j.virol.2007.05.031.
RX PUBMED; 17624390.
RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.;
RT "Principal host relationships and evolutionary history of the North
RT American arenaviruses";
RL Virology 367(2):235-243(2007).
XX
RN [2]
RP 1-7132
RA Cajimat M.N.B., Fulhorst C.F.;
RT ;
RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7132
FT /organism="Whitewater Arroyo virus"
FT /segment="L"
FT /specific_host="Neotoma albigula"
FT /strain="AV 9310135"
FT /mol_type="genomic RNA"
FT /country="USA:New Mexico"
FT /db_xref="taxon:46919"
FT misc_feature 1. .77
FT /note="5' non-coding region"
FT primer_bind 1. .19
FT CDS 78. .365
FT /codon_start=1
FT /product="Z protein"
FT /protein_id="AAX99351.1"
FT /translation="MGLRYSKEVRDRYGDKEPEGRIPITLNMPQTLYGRYNCKSCWFAN
FT KGLLKCSNHYLCLKCLTLMLGRSDYCGICGEVLPKKLVFENSPSAPPYEA"
FT misc_feature 366. .442
FT /note="intergenic region; IR"
FT CDS complement(443. .7102)
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AAX99352.1"
FT /translation="MIDCSDRINELKDLVRRWVPDEEAYTEQKTIVLSQVNPSSVITEG
FT LKLLSMLIEIDSCLKHGCVFNKNKTVNQILKDHKIVGPTLPDVVPDGFKVSGSTIILLE
FT TFVRVNQESFEQKYKYDFEKLMQLSKDLNKCGLILVPVIDGRSNYYVDRFPDWVIERIR
FT WLLLKLMDSVKDSGESIEELEYNRLISSLSNMENQNLGLESLKALREEGLDYKAKLMGV
FT IKDGTMSKMTASECRIGIAKIYDQFCLLRDSGQYQDVYCETSRADMIKWLKTHKLISPI
FT SNGEGGPLNSERCGFCQNHMLRVIAELVQSKRASCTQLPAESKETLRHKKLLSDCNKVK
FT GLKVLNTRRHAILCLDVIVLNSLIEVIKSGVDSSHFLINNHYKSVNDRLLSVDLIINKL
FT ERKLLKQPDWLKIVGRKLNKSVKEQSLDYVTVWLKELDYEFWYEFKFEREHSGKCEKPT
FT LRYKKQNQDTCYQVKFGTDKVLNEGMFVDYLDALSSLSLSMMNSMKTSSAPKLIINDEK
FT NFYGTIQCEECYYQDLDNLYNSILLYQKTGEKSRCYGLMLKDEEMTNAYKTGPSFYADP
FT KRFFLPIMSSTVILKTCLEMLSWLDWLSTAEINDVKTKLFTLVVNILITPSKRVQIYLQ
FT GFRYFIMAFVNEFHFKKLDQKLSVQALTSAEQHVFVLMDELVVYLLEEALEENMAKIFK
FT FVLNLSYLCHFITKETPDRLTDQIKCFEKFLEPKIQFGSSFVNLDSSPNLCKEDEEKFI
FT MNLNKLFSKDLGVDDMENPGICKTILSLCVSCFNCGILPINKVLDRDPQSPSFSSTALD
FT ISSNKSVVVPKLDEAGEVITHYDYQSLLSSVVVEMAQSFKDKLRFKLDRKSIQFAIYKR
FT LTNMVLKRRSHPKDHDDECAEEFEELLDEGTYKLINDIESNVLECLNGMVTSPMKKDVK
FT EQGAVRRYEGSDLLSTLWPRELMGPILAETSLHEVKDFDPSIFSDGTYQDLCHSVFNSK
FT FKKHFFLDDVLRFCPLESLVKNLATKNYIEKDYFECFKYILISAGFDNRVGRYDHRSRS
FT RLGFKDAAYHVKEASRISLRESNSEAISKRLDKSFFTNSSLRNLCFYSEESPTFQSTVS
FT SSTGKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESITSESKFSCLNNELEFE
FT KAILDMKSVVRLSGLAVSMDHSKWGPYMSPAIFNALFSNLDLQLKDGTSIDKGPIENLL
FT NWHLHKLVEVPYNVIEAYLKGYTKRGLGLMDRMSNTICENFIFNWFARGVVPSHISSVL
FT DMGQGILHNTSDYYGLVTEQFIMLCLEQCFDVKMSAYTSSDDEIILSNSFSLRNSDNES
FT LNNLKCKELLEFHYYLSSKLNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAAL
FT HNVKAKSPHQLAETIDTILDQCVANGVSIEIVKEISKRTNRLIKYSGHPIDPFLCVVDT
FT DLKDWVDGSRGYRLQRSIESAIGDDTQLSIIRNSCKKLFFKIRSGNIQEEYLISALQSS
FT PDECLRQMLSITEVNEQEIEDLVETRWLNLRTFGDLRLVLRTKIMSGTRILDREEIPSL
FT IKSVQSKLSKNFVRGAKKIVTDAINKSAFQSSICSGFIGLCKSMGSKCVRDGTGGFVYI
FT KMLLREIKDHQACGICKPKLSVFCKSALDRLPKYSRSLLWDYYSLVFTNACELGNWVFS
FT EAMLPKRVPTMVNPNFFWCVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSD
FT LASLKISWVQRIKFLDLCVAMDMSSECLGVISHIMRRKREESYIVKQNELSHAHVRDSN
FT PLEGGFQLNSLEICRNFLYQIIFESMLHPVLLTTSQFKKYFWYGEVELLPNDADHDLGQ
FT LTQFIMDCKTLNISRCMSLDDLDVGYVHSKITLSDIFINLSSFMHLLDWGSLNDYESFD
FT DIILKTGQKQTPIEIGIVLSHIRRSFKFKYDRKTNYHIECRLIIDKDEMMMNRWDEDNI
FT LEIEVSEVQCFVSGSEGHHISLDGVGLIPLHPLFSGKELIDFNKLLVDQSVEFRQTSTV
FT FQRVRLDFRQHTKDLRNKFSYKFQGPEQGLSPLHLYKGQIMERNTIVSRLDVPISSKSV
FT FLALEALDPAEHTTFLTSLHTYMKTRMSKSNPCFIRMTQEDLCLLIESYEAAFIGVLKL
FT ESDWIEFGDFALCFSNSLNCIMIADDGGQFKLKGRKCRSASTCPRPLEIE"
FT misc_feature 7103. .7132
FT /note="3' non-coding region"
FT primer_bind complement(7114. .7132)
XX
SQ Sequence 7132 BP; 2129 A; 1510 C; 1216 G; 2277 T; 0 other;
ay924395 Length: 7132 02-DEC-2007 Type: N Check: 2992 ..
1 cgcaccgagg atcctaggct attctggaga ttgcgcaatt gaactctttt
51 gacccagtgt cagaacagat tgcaataatg gggcttaggt attcaaagga
101 agtcagggat cggtatggtg acaaagagcc agagggaaga attcctatta
151 cattgaacat gcctcagact ctttatggta gatacaattg caaatcttgc
201 tggtttgcaa acaagggcct ccttaagtgt agtaatcatt atctatgttt
251 aaaatgtctc acattgatgc ttgggagatc tgattactgt gggatttgtg
301 gcgaggttct gccaaaaaaa ctggtattcg aaaattcgcc atcagccccc
351 ccatacgagg cctaaggcca cggggcccca gggcacaccc ccagctgggg
401 gtgtgccctc ggggcccccc gggcccaggg gcccgggaat gctcactcta
451 tttctagtgg tcttggacat gtggaggcac tcctgcactt tctgcctttt
501 agcttaaatt ggcctccatc atcggcaatc atgatgcagt tgaggctatt
551 gctgaagcat aaagcaaaat caccaaactc aatccagtct gattcaagct
601 tgagaacgcc aatgaaggct gcctcatagg actcaatcag tagacacagg
651 tcctcctgag tcatgcggat gaagcaagga ttgcttttgc tcattctggt
701 tttcatataa gtgtggagtg aggtgagaaa agtggtgtgt tctgctggat
751 ccaaagcctc caatgccaag aacactgatt ttgatgagat tgggacatct
801 agccttgaaa caattgtgtt tctttccata atttgacctt tatataagtg
851 tagtggacta agcccttgtt ctggtccttg aaacttgtaa gagaacttat
901 ttcttaaatc ctttgtgtgc tgtctaaaat caagcctgac tctctgaaaa
951 actgttgatg tctgtctaaa ctcaactgac tgatctacta aaagtttgtt
1001 aaaatctatg agttccttcc cagaaaacaa aggatgcaat ggaatgagtc
1051 cgacgccatc caaacttata tgatgtcctt ctgagccact tacaaagcat
1101 tgaacctctg aaacctcaat ctccaaaatg ttatcctcat cccatctgtt
1151 catcatcatt tcatccttgt ctattattag tctgcattca atgtgataat
1201 tagttttcct atcatacttg aacttgaaac ttctcctaat gtgcgagagt
1251 actatgccta tttcaatagg tgtctgcttt tgtcctgttt tgaggatgat
1301 gtcatcaaat gactcatagt catttaaact tccccagtca agtaaatgca
1351 tgaaactgct caaatttatg aatatgtcac tcagtgttat tttactatgt
1401 acataaccaa cgtccaaatc atctaaactc atgcatctgg agatattcag
1451 agttttgcag tccataatga attgagtgag ttggcccaaa tcatggtctg
1501 catcattagg gaggagctcc acttcaccat accaaaaata ctttttaaat
1551 tgagaagttg ttaataaaac tgggtgcaac attgattcaa atattatctg
1601 atataagaaa tttctacaaa tctcaagtga atttaattga aatccccctt
1651 ccaagggatt tgaatctctg acatgagcat gtgacaactc attttgtttc
1701 actatgtacg actcctctct tttacgcctc ataatgtggg aaataacccc
1751 taaacactca ctagacatgt ccatagcgac acaaaggtct aaaaacttaa
1801 ttctctgaac ccaggatatt tttaaagaag caaggtctga caaaaaaggt
1851 gcaatgtgct catcaaagag atcagggaaa ttcctcttga tagaatagag
1901 aacatgattc atgttgacct tgtcctccag ctcagtgtgg cttccaggtt
1951 tgacacacca aaaaaagttg gggtttacca tagttgggac tctcttaggt
2001 aacattgctt ctgaaaaaac ccagttccct aactcacaag catttgtaaa
2051 caccagtgaa taatagtccc acaaaagtga ccttgaatac tttgggagtc
2101 tatccaaagc acttttgcaa aacacactga gtttgggttt acaaattcca
2151 caagcttgat ggtccttgat ttctctcaac agcattttga tataaacaaa
2201 accaccagta ccgtctctaa cacatttgga acccatactt ttacacaacc
2251 ctatgaaccc agagcatata ctgctttgaa aagcagattt attgattgcg
2301 tctgtgacaa tctttttagc ccccctcaca aaattctttg agagttttga
2351 ttgcacagat ttgatcagtg atggtatctc ttctctatcc aagatccttg
2401 tgcctgacat aattttagtt cttaagacta gtcttaaatc accaaaggtt
2451 cttagattca accatcttgt ttcaactagg tcctcaatct cttgttcatt
2501 cacttcagta atgctcaaca tctgtctgag gcattcatca ggagaagatt
2551 gaagggcact tataagatac tcttcttgta tatttcctga tcttatttta
2601 aaaaagagtt tcttacaaga atttcttata atcgagagtt gtgtgtcatc
2651 accaatggct gactctatgg acctttgaag acggtaacct cttgatccgt
2701 ccacccagtc cttaagatct gtgtcaacaa cacataaaaa agggtcaatt
2751 ggatgaccac tatatttgat cagtctatta gtccttttgg agatctcttt
2801 tacaatctca attgagacac cattagccac acattgatca agaattgtgt
2851 ctatagtttc cgctagttga tgaggtgatt ttgctttcac attatgtagt
2901 gcagctgcaa caaatttagt caataagggc acttcttgtg accaaataaa
2951 aaatcttgat ttgaattcac ttgcgaagga tccagcaaca gttttggggc
3001 taacaaactt attcaatttt gaagatagat aataatggaa ctcaagaagt
3051 tctttacact taagattatt taatgattca ttatcagaat tccttaatga
3101 aaatgaatta cttaagatta tttcatcatc acttgacgtg taggcagaca
3151 tctttacatc aaagcactgt tctaaacaca acatgataaa ttgctcagta
3201 accaacccat aataatctga tgtgttgtgt aaaattccct gacccatatc
3251 taatacagaa gaaatgtggg aggggaccac acctctggca aaccagttga
3301 aaataaagtt ttcacagatt gtgtttgaca tcctatccat gagtcccaaa
3351 cctctctttg tgtaaccctt gaggtatgcc tcaataacat tgtaaggaac
3401 ctcaactaac ttgtgcaaat gccaattgag gaggttttca ataggaccct
3451 tgtcaattga ggtcccatct tttagttgca aatcaaggtt tgagaacagg
3501 gcattgaaaa tagcagggga catataaggg ccccattttg aatggtccat
3551 gctcaccgct agccctgaga gtcgcaccac agacttcata tccaatattg
3601 ccttttcaaa ctcaagctca ttgtttaagc aggaaaattt actctctgat
3651 gtgattgatt caaagtagtc ctcaatcaat ctactagtga gttttgtatt
3701 taaatcacca acatatagct ctctattact tccaacttgt tctttatatg
3751 acaatccaaa cttaagtttt cctgtactgg aagaaaccgt tgattgaaag
3801 gttggtgatt cttcagaata aaagcataaa tttctaaggg atgagtttgt
3851 aaagaaactt ttatcaagcc tttttgaaat tgcttcagaa ttgctttctc
3901 tgagacttat tctagaagcc tccttcacat gatatgcagc atctttgaat
3951 ccaagcctag acctactcct gtgatcgtat cttccaactc tgttatcaaa
4001 ccctgctgag atcagtatat atttgaaaca ttcaaaataa tccttttcaa
4051 tatagttctt agtggctaag ttcttcacca gtgattctaa gggacaaaat
4101 cttaacacat catccaagaa gaaatgcttt ttaaatttac tgttaaaaac
4151 tgaatgacac aaatcttggt aggtgccgtc tgaaaagatt gaaggatcaa
4201 aatccttgac ttcatgtagt gaggtctcag ctaaaatggg gcccattaac
4251 tctctcggcc acaatgtgct tagcaaatca gaaccctcat accttcgtac
4301 tgctccctgt tctttaacat ccttcttcat tggagaggtg accattccgt
4351 ttaagcactc aagaacatta gattctatat cattgattag tttatatgtg
4401 ccctcatcaa gcagttcctc gaattcttca gcacactcat cgtcatggtc
4451 ctttgggtgg gaccttcttt tgagcaccat attagttagt cttttgtaaa
4501 ttgcaaattg aatagatttt ctatccagtt taaatcttaa cttatcttta
4551 aaggattgtg ccatttcaac tactacagat gacaaaaggc tctgataatc
4601 ataatgtgtg ataacctcac ctgcttcatc caatttaggg acaacaacac
4651 tcttattgct ggatatatca agagctgtgc tgctgaatga tggtgattga
4701 gggtcacgat ccaaaacttt gttaattggt agtattccac aattaaagca
4751 agaaacacat aatgatagaa tagttttgca tatgcctgga ttctccatat
4801 catcaacacc aaggtctttt gaaaagagtt tgttcaaatt cataataaac
4851 ttctcttcat cttctttaca caagttgggg gatgagtcca gattaacaaa
4901 tgaagatcca aattgtatct tgggctccaa aaatttctca aagcacttaa
4951 tctgatctgt caatctatca ggggtctcct tagtgataaa gtgacacaag
5001 taagacagat ttagaacaaa tttaaaaatc ttagccatgt tctcttctaa
5051 agcctcctcc aacagataca caaccagctc atccatcaat acaaaaacat
5101 gttgttctgc agaagtcaat gcctgaacgc ttaacttttg atctaacttc
5151 ttgaaatgga attcattgac aaaagccatg ataaaatatc tgaatccctg
5201 taaataaatc tggacccttt tactaggtgt aatgaggata ttcacaacca
5251 gtgtgaagag tttggttttc acatcattta tttcagcggt tgatagccaa
5301 tctaaccatg ataacatctc cagacatgtt ttaagaatca cagttgaact
5351 cattattggt aagaagaacc tcttggggtc tgcataaaag cttgggcctg
5401 ttttatatgc attagtcatt tcttcatctt ttagcatcaa accgtaacac
5451 cttgatttct caccggtctt ctgatataag agtatactgt tgtataaatt
5501 atccagatcc tgatagtaac actcctcaca ttggattgtt ccataaaaat
5551 tcttctcatc attaattatt aattttggtg ctgaacttgt cttcatagag
5601 ttcatcatgc ttaaacttag acttgataat gcatcaagat aatccacaaa
5651 cataccttca ttaaggacct tatctgtccc gaatttaacc tgataacatg
5701 tatcttgatt ctgtttttta taccttaatg ttggtttctc acatttacct
5751 gagtgctctc tctcaaattt aaactcatac cagaactcat aatccaattc
5801 cttcaaccat acagtgacat aatctaaact ttgttccttg acacttttat
5851 tcaattttct tcccacaatt ttgagccaat caggttgttt caacaatttc
5901 ctttctaatt tattgattat taagtctact gacagtagtc tgtcattcac
5951 acttttatag tgattgttaa taaggaagtg actactatca actcctgatt
6001 tgattacttc aatcagacta ttaaggacaa tcacatcaag acaaagtatt
6051 gcatgtctcc ttgtattaag gactttcagc cccttcactt tattacagtc
6101 agagagcagt tttttgtgtc tcaatgtctc tttgctctca gctggcagtt
6151 gggtgcatga tgctctcttg ctttgtacca gctcggcaat aaccctcagc
6201 atatggtttt gacaaaaacc acaacgttca ctattgagtg ggcctccttc
6251 accattgctt ataggtgaaa ttaacttgtg agtttttaac catttgatca
6301 tgtctgccct agatgtttca cagtacacat cctgatattg cccactatcc
6351 cttagcaaac aaaattgatc ataaatctta gcgataccta ttctacactc
6401 agaagctgtc attttggaca ttgtcccatc ctttatcacc cccatcaatt
6451 tcgctttgta atccaaacct tcttctctca gagccttaag tgattcaagc
6501 cctaggttct gattctccat gttagagaga ctggaaatta aacgattata
6551 ttccaactct tcaatacttt ctccgctatc cttcacagaa tccattagtt
6601 taagcaacag ccatctaatc ctctctataa cccagtctgg gaaacgatcc
6651 acataatagt ttgacctccc atcaatcaca ggcacaagaa tgagaccaca
6701 tttattcaag tctttagata attgcattaa tttttcaaaa tcatatttgt
6751 acttttgttc aaaagattct tgattcacac gaacaaaagt ttccaagaga
6801 attattgtag atcctgacac tttgaatcca tcagggacca catctgggag
6851 tgttggacct acaatcttgt ggtctttcaa gatttgattc actgtcttat
6901 tcttgttgaa aacgcaccca tgcttaaggc atgaatcaat ctcgatcagc
6951 attgatagga gcttcagacc ctcggttata actgaagagg gattgacctg
7001 agagaggact attgtttttt gttctgtgta ggcttcttcg tcgggaaccc
7051 accttctaac gagatccttg agctcattta tacgatcaga gcaatcaatc
7101 atgatcaaga aatgcctagg atccactgtg cg