Sequence of DPV Pepper golden mosaic virus
Pepper golden mosaic virus isolate PepGMV-D segment DNA-A, complete sequence.
ACC No: AY928514
Dated: 2005-09-21 | Length: 2618 | CRC: 2013371116
!!NA_SEQUENCE 1.0
ID AY928514 standard; circular genomic DNA; VRL; 2618 BP.
XX
AC AY928514;
XX
SV AY928514.1
XX
DT 21-SEP-2005 (Rel. 85, Created)
DT 21-SEP-2005 (Rel. 85, Last updated, Version 1)
XX
DE Pepper golden mosaic virus isolate PepGMV-D segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Pepper golden mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2618
RA Brown J.K., Idris A.M., Ostraw K.M., Goldberg N., French R., Drake D.C.;
RT "Genetic and phenotypic variation of Pepper golden mosaic virus complex";
RL Phytopathology 95:1217-1224(2005).
XX
RN [2]
RP 1-2618
RA Brown J.K., Idris A.M., Stenger D.C.;
RT ;
RL Submitted (11-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2618
FT /country="USA"
FT /db_xref="taxon:223301"
FT /mol_type="genomic DNA"
FT /organism="Pepper golden mosaic virus"
FT /isolate="PepGMV-D"
FT /segment="DNA-A"
FT CDS 210. .965
FT /codon_start=1
FT /note="coat protein"
FT /product="AV1"
FT /protein_id="AAY16457.1"
FT /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY
FT RKPRIYRTFRSPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYCTPMDFGQVFNMYDNEPSTATV
FT KNDLRDRFQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(962. .1360)
FT /codon_start=1
FT /note="replication enhancer; REn"
FT /product="AC3"
FT /protein_id="AAY16460.1"
FT /translation="MDSRTGDSITVRQAENSVFIWEVPNPLFFRIQHVEDPLFTRTRIY
FT HIQVRFNHNLRRALALHKAYLHFQIWTTSMTASGTTYLSRFKFRVMLYLHRLGAIGINN
FT VIRAVRFATDKSYVNAVLENHEIKFKLY"
FT CDS complement(1107. .1496)
FT /codon_start=1
FT /note="transcriptional transactivtor protein; TrAP"
FT /product="AC2"
FT /protein_id="AAY16459.1"
FT /translation="MLNSSSSTLPSIKAQHRIAKKRTIRRRRIDLNCGCSIFLHINCAN
FT HGFTHRGQHHCASGREFRFYLGGSKSPIFQDTTCRGPVVHQDQDIPHPSPVQPQPTPSI
FT GSPQGIPSFPNLDDFDDSFWDDIFK"
FT CDS complement(1438. .2487)
FT /codon_start=1
FT /note="replication initiator protein; Rep"
FT /product="AC1"
FT /protein_id="AAY16458.1"
FT /translation="MPLPTKSFRLQCKNIFLTYPKCDIPKDEAIEMLRSLKWSVVKPIY
FT IRVAREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQAAKDANAVKN
FT YITKEGDYCESGQYKVSGGSKANKDDVYYNAVNAASADEALDIIKAGDPKTFIVSYHNI
FT KANIERLFTTPPTPWNPPYPLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS
FT RSGKTMWARALGPHNYLSGHLDFNAKVYSNNVEYNVIDDITPQYLKLKHWKELIGAQKD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENASLRAWTQKNAQFVILHAP
FT LYKSTAQDC"
XX
SQ Sequence 2618 BP; 675 A; 557 C; 629 G; 757 T; 0 other;
AY928514 Length: 2618 September 27, 2005 09:57 Type: N Check: 9141 ..
1 actggatggc cgcgattttt ttggagtctt tgggggacca ctcagaatag
51 agggctgaga ttaaatagat aaagagatgg gaccaccaat tataggatat
101 ttgaccgacc aatcacatcc cgcctgtcaa gtctagatat ttgtgccttg
151 gggaccaagg tgtggtccta taaatgcacg tgcatgtgca ttaacctctt
201 taattcaaaa tggttaagcg ggatgcccca tggcgtttaa tggcggggac
251 ctccaaggtt tcccgctcag ctaattattc acgtggcacg ggtatgggcc
301 ctaaattcga taaggccgct gcttgggtta acaggcccat gtacaggaag
351 cccaggatat atcggacgtt tagaagccca gatgttccta gaggttgtga
401 agggccctgt aaagtccagt cattcgagca gcggcatgat atctcccatg
451 ttgggaaggt catgtgcatt tcggacgtga cacgtggtaa cggtatcact
501 catcgtgtag gcaagcgttt ctgcgtcaag tctgcatacg ttctgggtaa
551 gatatggatg gacgagaata tcaagctcaa gaaccatacc aacagcgtca
601 tgttctggct cgtgagagat aggagaccat attgtacccc tatggatttc
651 ggtcaggtgt tcaacatgta tgacaacgag cccagtactg ccactgtgaa
701 gaacgatctt cgtgatcgtt tccaagtcat gcacaggttc tcggctaagg
751 tcacaggtgg acagtatgcc agcaacgagc aggcgttggt taggcgcttc
801 tggaaggtga acaactacgt tgtctacaac caccaggaag ctggcaaata
851 cgagaatcat actgagaacg ccctgttatt gtatatggca tgtactcatg
901 catctaaccc cgtgtacgcg acattgaaaa ttcgaatcta tttttacgat
951 tcgataacaa attaataaag tttgaatttt atttcatgat tctcaagtac
1001 agcatttaca taggatttgt ccgtcgcaaa acgaacagct ctaattacat
1051 tgtttatgcc tatggcccct agcctatgta aatataacat gacgcgaaat
1101 ttgaatctac ttaaatatgt cgtcccagaa gctgtcatcg aagtcgtcca
1151 gatttggaaa tgaaggtatg ccttgtggag agccaatgct cggcgtaggt
1201 tgtggttgaa ccggacttgg atgtggtata tcctggtcct ggtgaacaac
1251 gggtcctcta catgttgtat cctgaaaaat aggggatttg gaacctccca
1301 aataaaaacg gaattctctg cctgacgcac agtgatgctg tccccggtgc
1351 gtgaatccat gatttgcgca gttgatgtgg aggaatatag agcagccgca
1401 gtttaggtct atgcgtcgtc tgcgaatagt tctcttctta gcaatcctgt
1451 gctgtgcttt tatagagggg agcgtggagg atgacgaatt gagcattttt
1501 ttgtgtccac gctctcaatg atgcattttc ttctttgttg aggaaagcta
1551 tatagctgct accttcccct ggattgcaca gcacaattga tggtatcccg
1601 cctttaattt gaactggctt tccgtattta cagttggact gccagtcttt
1651 ttgggcccca attagctctt tccagtgctt tagctttaga tattggggcg
1701 tgatatcatc aatgacgtta tactccacat tgtttgaata gacctttgca
1751 ttgaaatcaa gatgaccgct caaataatta tgtgggccta atgcacgtgc
1801 ccacattgtc ttgccgcttc gcgaatcacc ctcaatgaca atactaatcg
1851 gtctatctgg ccgcgcagcg gaactccgac caaaatattc agcaacccaa
1901 tgttgcatat cctcaggaac gttgttaaac gaggataatg gatatggagg
1951 attccatggc gtaggaggag ttgtaaagag gcgctcgatg ttagccttta
2001 tgttatgata actaacaatg aacgttttgg gatcaccagc tttgattatg
2051 tcgagcgcct cgtccgcact tgcagcattt acagcgttat agtagacgtc
2101 gtctttattt gctttggacc ccccggaaac tttgtactgc ccagattcac
2151 aataatcacc ctcttttgtt atgtaatttt taacggcatt tgcgtctttg
2201 gctgcctgaa cgtttggatg aaactgggca gacctccggg ggtgagtaat
2251 gtcgaagaat cgtgcatctt tgatgttgca tttcccggtc aattggatta
2301 gacagtgcaa gtgcgggaac ccatcggaat gctcctctcg tgctacccgg
2351 atgtagatag gtttaaccac tgaccatttt aaagaacgga gcatttcgat
2401 agcttcatcc tttgggatat cgcattttgg atatgttaag aaaatgtttt
2451 tacattgtaa gcgaaatgat tttgtaggta gtggcatttt tgcaaatatg
2501 atataggact ccagcagagt ccctcaactt ctgtcatata ttgtggagtc
2551 ctggagtccc ttatatacat aaagcctctt ggggactcca agggcaaaag
2601 cggccatcct ataatatt