Sequence of DPV Chickpea chlorotic stunt virus
Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome.
ACC No: AY956384
Dated: 2006-06-23 | Length: 5900 | CRC: 1587476096
ID AY956384; SV 1; linear; genomic RNA; STD; VRL; 5900 BP.
XX
AC AY956384;
XX
DT 23-JUN-2006 (Rel. 88, Created)
DT 23-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome.
XX
KW .
XX
OS Chickpea chlorotic stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5900
RA Abraham A.D., Menzel W., Lesemann D.E., Varrelmann M., Vetten H.J.;
RT "Chickpea chlorotic stunt virus: A New Polerovirus Infecting Cool-Season
RT Food Legumes in Ethiopia";
RL Phytopathology 96(5):437-446(2006).
XX
RN [2]
RP 1-5900
RA Abraham A.D., Menzel W., Varrelmann M., Vetten H.J.;
RT ;
RL Submitted (07-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Institute for Plant Virology, Microbiology and Biosafety, Federal
RL Biological Research Center for Agriculture and Forestry, Messeweg 11-12,
RL Braunschweig 38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .5900
FT /organism="Chickpea chlorotic stunt virus"
FT /specific_host="faba bean"
FT /isolate="Et-fb-am1"
FT /mol_type="genomic RNA"
FT /country="Ethiopia:Ambo"
FT /virion
FT /note="strain group E isolate"
FT /db_xref="taxon:328430"
FT gene 51. .863
FT /gene="p0"
FT CDS 51. .863
FT /codon_start=1
FT /gene="p0"
FT /product="P0 protein"
FT /note="ORF0"
FT /protein_id="AAY90037.1"
FT /translation="MNVLINKFTSNFEINFSPSLSLATRRSLICLFLANSSEFIKISNE
FT RDGTDKSTCYRSLLLLLPFLFGSFEFFGDQLVVPWNGGNNRHHGLFQRLLTNTRFCTLR
FT LQPGREARYNPSIQITPTRVELYRYIQSPLVEGLSGHQDLLSLGLHHFTKLVGAYVRQL
FT ERNNFCLRSEIILGDSVDLDVSHLGILLMDGSDHNNTHHAYSGSRVINCLHRCYGQALT
FT SDIWELFGVDYCPCLQVPSFPLEAEIPEDSFQFDEDSEGEDDEGFWEL"
FT gene 190. .3470
FT /gene="p2"
FT CDS join(190. .1728,1728. .3470)
FT /codon_start=1
FT /ribosomal_slippage
FT /gene="p2"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1/ORF2; translated by -1 frameshift"
FT /protein_id="AAY90038.1"
FT /translation="MALTKVLAIALFCFCFHFFLGASSSLATNWSSPGMAGITAITGFS
FT NDYLQTPGFVPYVYNLVEKPVTIPQSKLPLPELNYTDIFKVLWLKGYQDTRTCLVLAFT
FT TSQSSLAHMYDNLSEITSACALRLSWAIVSIWTLVIWAFCSWMVRIITTHTMLIVAVGL
FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKTVSNSMKIVKEKMTKGFG
FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVMEEAYWVKSNKTGN
FT KIKTSDFRPLTQSQNADLSILVGPPNWQGLLGCSAAQYVTVKHLAAGDARIFYRKNGEW
FT YSGVAKLVGPHKLNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDEEENRNYMAAIPHL
FT EGLTASKYIYETTAPKGRIFDEDLYQELLEEFSTQEARSIMKHKGFDMECSGKFKGRWV
FT WIDCNNDLTPAEINNILSSKGKTRLESESPRFFEDAEEFYDAADSMELETSKKANFKRA
FT SRRRPRKNRKRRLHPKDQERRWRHCPESDRGSRRENECSRVGETSDLQGGSEGAEEYKH
FT PTKEEQKAQRKAWRREQANSFNYFFASQYKWEVPAASEEAPGFEACGKIPQFYHPKQKQ
FT QGRWGEKVVAQHPEMGEKVRGFGWPEFGKEAELKSLRLQTARWLKRAESAKIPSSEERE
FT RVIGKTVEAYQNVKSNCPAATRLNELSWDQFQKSFQPAVHSLELDAGIGVPYIAYGLPT
FT HRGWVENHERQLLPILAQLTYDRLKKMSQVNFEDMSAEELVQKGLCDPIRVFVKGEPHK
FT QAKLDEGRYRLIMSVSLVDQLVARVLFQEQNKLEITLWRSIPSKPGMGLSTDAQVTEFM
FT SSLSQHVQVPVEDLVYDWEKHVLPTDCSGFDWSVSDWLLQDEMEVRNRLTENNNDLTKR
FT LRGCWLKCLSNSVLALSDGSLFAQRVPGVQKSGSYNTSSTNSRIRVMCAFHAGASWCIA
FT MGDDALESVDTDLSVYKDIGLKVEVSGQLEFCSHIFEKPDLAIPVNVGKMLYKLIYGYN
FT PECGSIQVLRNYIDACTSVLNELRHDPEMVQLLYSWLLDPVLPQN"
FT gene 190. .2193
FT /gene="p1"
FT CDS 190. .2193
FT /codon_start=1
FT /gene="p1"
FT /product="P1 protein"
FT /note="ORF1"
FT /protein_id="AAY90039.1"
FT /translation="MALTKVLAIALFCFCFHFFLGASSSLATNWSSPGMAGITAITGFS
FT NDYLQTPGFVPYVYNLVEKPVTIPQSKLPLPELNYTDIFKVLWLKGYQDTRTCLVLAFT
FT TSQSSLAHMYDNLSEITSACALRLSWAIVSIWTLVIWAFCSWMVRIITTHTMLIVAVGL
FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKTVSNSMKIVKEKMTKGFG
FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVMEEAYWVKSNKTGN
FT KIKTSDFRPLTQSQNADLSILVGPPNWQGLLGCSAAQYVTVKHLAAGDARIFYRKNGEW
FT YSGVAKLVGPHKLNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDEEENRNYMAAIPHL
FT EGLTASKYIYETTAPKGRIFDEDLYQELLEEFSTQEARSIMKHKGFDMECSGKFKGRWV
FT WIDCNNDLTPAEINNILSSKGKTRLESESPRFFEDAEEFYDAADSMELETSKKANLNGL
FT RGADLVKTGKEGSTQKTKSDDGDTVQKVIEALVAKMNVQELEKQVISKVAQKVQKNTST
FT PPKKNRRRRGKRGGESKQIALTTSSPPSTSGKYLPPQKRPQGLKPVEKSPNSTIQSKNN
FT KVDGERKSSPNTQRWVKKSEASAGQSSAKKLN"
FT gene 3663. .5723
FT /gene="p5"
FT CDS 3663. .5723
FT /codon_start=1
FT /transl_except=(pos:4263. .4265,aa:OTHER)
FT /gene="p5"
FT /product="CP-readthrough protein"
FT /note="ORF3 and ORF5; translated by in-frame readthrough of
FT ORF3 stop codon"
FT /protein_id="AAY90040.1"
FT /translation="MNTVVVRNNGRRRRNRRTVQRARRRNPVVVVEAPRQPQRGRRRRR
FT NRRRASGRSTAGRRGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSSGILRAYHEYK
FT ISMVKLEFISEAASTSSGSIAYELDPHCKSTSLGSYINKFGITSNGQRTFAARLINGIE
FT WHSSDEDQFRILYKGNGGSAIAGSFRITIKCQTQNPKXVDDSSPPGPSPTPPPPPPAPA
FT PEPQPCKKYRFWGYEGVPQNKIVTAQNDRNIDVRGLNYVKFYKWEDDNWTEVNLQANYS
FT VNNSQYAEPYMIIPASKGKFHVYLECDGQMAVKSVGGKADNSWRGLIAYDTSRRMWNVG
FT NYKGCTIENYRKTDSFVLGHPDVEVNDCKFDKARGVEADWYASFQLTCDDDEGSWILYA
FT PPIPKDSLYNYTVSYGEYTENMCEWGAVSISIDEDNSSTGNEVKIKPGRGHLVHRALPE
FT GTLEQQPLEDVQVKEYFWKENQSETTSDSDGESFISKIKGKLPMTTKLPPKGFLSRLKP
FT SEKEETARSKESEVKPEDVDNLVRAAGKEFQYGIYDDARERLHNKEFNQNMEELESDLE
FT EINRLEPPDIDVWRGKDTAETVAVFEDPWEFFRKQEDPNPPKLKGTLSKIGSSIGGGSL
FT SGGNLRRAAESVNEDSMKFKLSTTERNQYERIRKSKGETAARVYLRSRFSS"
FT gene 3663. .4265
FT /gene="p3"
FT CDS 3663. .4265
FT /codon_start=1
FT /gene="p3"
FT /product="coat protein"
FT /note="ORF3"
FT /protein_id="AAY90041.1"
FT /translation="MNTVVVRNNGRRRRNRRTVQRARRRNPVVVVEAPRQPQRGRRRRR
FT NRRRASGRSTAGRRGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSSGILRAYHEYK
FT ISMVKLEFISEAASTSSGSIAYELDPHCKSTSLGSYINKFGITSNGQRTFAARLINGIE
FT WHSSDEDQFRILYKGNGGSAIAGSFRITIKCQTQNPK"
FT gene 3688. .4269
FT /gene="p4"
FT CDS 3688. .4269
FT /codon_start=1
FT /gene="p4"
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="AAY90042.1"
FT /translation="MAEGGEIGVLFSGLGAATQWLWSKPLGSHSAEDDEEETVDALQEE
FT AQLEDEGLARHLCFRKTTSRVVPQEVSRSGRVYQTAQLSALEYSGPTMNIKSQWSSWSS
FT SPRPLPPPQGRSLTSLIPTANPLRLGPTSINLESPRMDKGLLQRGLLTESNGTPQTRTS
FT SGYFIKEMEAPPSRGHSGSPSSAKLRIRNR"
XX
SQ Sequence 5900 BP; 1750 A; 1300 C; 1424 G; 1426 T; 0 other;
ay956384 Length: 5900 23-JUN-2006 Type: N Check: 639 ..
1 acaaaagaaa gcaagaggga aaacttcacg ctgagtatct cgcgaagttt
51 atgaacgtgt tgattaacaa attcacttca aattttgaga tcaatttctc
101 accctcactt tctctcgcaa ccagaagatc gttaatttgc ttgttccttg
151 caaactcaag cgaatttatt aaaatatcaa acgagcgaga tggcactgac
201 aaaagtactt gctatcgctc tcttctgctt ttgcttccat ttctttttgg
251 gagcttcgag ttctttggcg accaactggt cgtcccctgg aatggcggga
301 ataaccgcca tcacgggctt ttccaacgat tacttacaaa caccaggttt
351 tgtaccttac gtttacaacc tggtagagaa gcccgttaca atccctcaat
401 ccaaattacc cctaccagag ttgaactata cagatatatt caaagtcctc
451 tggttgaagg gttatcagga caccaggacc tgcttagtct tggccttcac
501 cacttcacaa agctcgttgg cgcatatgta cgacaacttg agcgaaataa
551 cttctgcctg cgctctgaga ttatcttggg cgatagtgtc gatctggacg
601 ttagtcatct gggcattttg ctcatggatg gttcggatca taacaacaca
651 caccatgctt atagtggcag tagggttatt aattgcttgc accgttgcta
701 cggccaagct cttacatctg atatttggga gcttttcggt gtggattatt
751 gtccctgttt acaggtccct agctttcctt tggaagctga gatccccgaa
801 gacagtttcc aattcgatga agatagtgaa ggagaagatg acgaagggtt
851 ttgggagcta tgatatgatt atgtcccctc caaaaagttg cgtgctcgaa
901 atgcttcacg atgatgaaca acattgtggt tatgcgagct gcatattatt
951 agctgatgga acagtggggt tgttgacttc atatcacgtc atggaggaag
1001 cttactgggt taagtctaac aagactggaa ataaaattaa gaccagtgac
1051 tttcgaccac ttactcaatc ccaaaacgct gatttgtcta ttttggtagg
1101 tccacccaac tggcaagggc ttttgggctg ttcagcagcc caatatgtta
1151 cagtaaaaca tctagccgcc ggtgacgctc gtatcttcta ccgtaaaaac
1201 ggtgaatggt actctggagt ggctaagttg gtaggacctc acaaattgaa
1251 cttcgtcaat gtcctgtcaa ataccgagcc tgggttcagc ggcacccctt
1301 attttagtgg aaacaaaata gttggagtac acacaggagg ggatgaagaa
1351 gagaatagaa attatatggc cgctatccct catcttgaag gtttgactgc
1401 gagcaaatat atatatgaaa cgactgctcc caaaggtcga atctttgacg
1451 aagatttata ccaagaattg ctagaagagt tttccacgca agaagcacga
1501 tcgataatga aacataaagg cttcgatatg gaatgttctg gaaagtttaa
1551 aggcagatgg gtttggatag attgtaataa tgatctcacc cctgccgaga
1601 taaataacat tctctctagc aaagggaaaa ccaggcttga gtcagaaagc
1651 ccgcgattct tcgaagatgc cgaagaattt tatgatgccg ctgactcgat
1701 ggaacttgag acttcaaaga aggctaattt aaacgggctt cgaggcgccg
1751 acctcgtaaa aaccggaaaa gaaggctcca cccaaaagac caagagcgac
1801 gatggagaca ctgtccagaa agtgatagag gctctcgtcg cgaaaatgaa
1851 tgttcaagag ttggagaaac aagtgatctc caaggtggct cagaaggtgc
1901 agaagaatac aagcacccca ccaaagaaga acagaaggcg cagaggaaag
1951 cgtggaggag agagcaagca aatagcttta actacttctt cgcctcccag
2001 tacaagtggg aagtacctgc cgcctcagaa gaggccccag ggtttgaagc
2051 ctgtggaaaa atcccccaat tctaccatcc aaagcaaaaa caacaaggta
2101 gatggggaga gaaagtcgtc gcccaacacc cagagatggg tgaaaaagtc
2151 agaggcttcg gctggccaga gttcggcaaa gaagctgaac tgaaatccct
2201 gcggttgcaa accgcgaggt ggctcaaacg cgctgagtca gctaaaatcc
2251 cgtcgtctga ggaacgggag cgcgttatcg gtaaaacagt agaggcatat
2301 caaaatgtga aatcaaattg ccctgctgca acaaggctga acgagctgag
2351 ttgggatcaa tttcaaaaat cctttcaacc agccgttcac tccctcgaac
2401 ttgatgctgg aattggcgtt ccttatatag catatggtct ccccacccat
2451 cgaggatggg ttgagaacca cgaacgccag cttctcccta ttttggctca
2501 gttgacctac gaccgactaa agaagatgtc gcaggttaac tttgaagaca
2551 tgagtgctga ggagttagta cagaagggtc tatgtgaccc catcagagta
2601 ttcgtcaagg gagaaccgca taaacaggca aaacttgatg agggtcgtta
2651 ccgcctcatc atgtcggtta gccttgtaga ccaattggta gcccgggtat
2701 tgtttcaaga acaaaataag ctagagataa ctctctggcg atcaatacca
2751 agcaaacccg gaatggggct ttctacggat gcccaagtga cggagttcat
2801 gagttctctg tcccaacatg tgcaagtacc agtcgaagac ttggtatatg
2851 actgggaaaa gcatgtgttg cccacagatt gctccggatt tgactggagc
2901 gtctccgact ggctcctcca agatgaaatg gaggttagaa atcgcctcac
2951 tgagaataac aacgacctta ccaagcgcct tcgtggctgc tggttgaagt
3001 gtctatctaa cagtgtcttg gcgttatccg atggcagcct ctttgcccaa
3051 cgcgtaccag gagttcagaa gtctggaagc tacaacacta gctcgaccaa
3101 ctctagaatc cgcgtaatgt gtgcttttca cgctggcgcc tcgtggtgta
3151 tagccatggg agatgatgct ttggagtctg tggacactga cctatcagtg
3201 tataaagata taggtttaaa agtcgaggtt tcaggacaac tggaattttg
3251 ctctcacatt tttgagaagc ctgacctcgc cattccggta aacgtaggaa
3301 aaatgttgta caaactcatc tacgggtaca atccggaatg tggatccatc
3351 caggtcctca ggaattatat tgacgcttgc acctcagtgc taaatgaatt
3401 gcgtcacgac cctgagatgg tccaactcct ctactcgtgg ctccttgatc
3451 cagtgttgcc acaaaattaa tcaagagaga ggagtacaga gatagccgac
3501 taactagttg cgagatcgga gtctcagtct agttcattgc aaagatagat
3551 tacaaatttt tagctggttt tgccgctggc tttgtgacat caatcccaat
3601 atctgtctgt gcaatatata tcatctacct taaaatttca acccacgtga
3651 gatcaatagt caatgaatac ggtcgtggtt agaaataatg gcagaaggag
3701 gagaaatagg cgtactgttc agcgggctag gcgccgcaac ccagtggttg
3751 tggtcgaagc ccctaggcag ccacagcgcg gaagacgacg aagaagaaac
3801 cgtcgacgcg cttcaggaag aagcacagct ggaagacgag ggtctagcga
3851 gacatttgtg ttttcgaaag acaacctcgc gggtagttcc tcaggaagta
3901 tcacgttcgg gccgagtcta tcagactgcc cagctttcag ctctggaata
3951 ctcagggcct accatgaata taaaatctca atggtcaagt tggagttcat
4001 ctccgaggcc gcttccacct cctcagggtc gatcgcttac gagcttgatc
4051 cccactgcaa atccacttcg cttgggtcct acatcaataa atttggaatc
4101 acctcgaatg gacaaaggac ttttgcagcg aggcttatta acggaatcga
4151 atggcactcc tcagacgagg accagttcag gatactttat aaaggaaatg
4201 gaggctccgc catcgcgggg tcattcagga tcaccatcaa gtgccaaact
4251 cagaatccga aataggtaga tgacagttcc ccccccggac caagtccaac
4301 accacctcca cctcccccag caccagctcc agaaccacaa ccttgtaaga
4351 aatataggtt ttggggttat gaaggtgtgc cacagaataa gatagtcaca
4401 gcgcagaacg atagaaatat cgatgtgcgt ggcttgaatt atgttaagtt
4451 ttataaatgg gaggatgata attggacgga agtcaacctt caagccaatt
4501 attcagtgaa caattcgcag tatgcagaac catacatgat catccccgca
4551 tctaaaggca agttccacgt ctaccttgaa tgtgatggac agatggctgt
4601 caaaagtgtg ggtggaaaag cggataattc ctggagaggc ttgattgcgt
4651 atgacacctc cagaagaatg tggaatgttg gtaattacaa aggctgtacc
4701 atagaaaatt ataggaaaac ggacagcttt gtgcttggtc accctgatgt
4751 tgaagtcaat gattgcaaat ttgataaagc caggggagta gaagcagatt
4801 ggtacgcgtc gttccagtta acttgtgatg acgacgaagg atcttggatc
4851 ctgtacgccc cacctatccc aaaggacagc ttgtataact atactgtctc
4901 ttatggagaa tatacagaaa atatgtgtga atggggcgcc gtatcaatat
4951 caattgatga agacaacagc tctacaggga acgaagtcaa aattaaaccc
5001 ggaagggggc atttagtgca ccgggctctg ccagaaggaa cactggaaca
5051 acaacccttg gaggatgtcc aagtaaaaga atacttctgg aaggaaaacc
5101 agtctgaaac cacaagcgat tcggacggtg agtcattcat tagcaaaatc
5151 aagggaaaat tacctatgac gactaaactc ccgccgaaag gctttctctc
5201 gcgtcttaaa ccttcggaaa aagaagaaac agccagatca aaagaatctg
5251 aggtcaagcc ggaggatgtc gacaacctgg ttcgagccgc aggcaaagaa
5301 ttccagtatg gcatttatga tgatgctaga gagaggctcc ataataagga
5351 atttaaccag aacatggaag aactggagtc agaccttgaa gaaataaatc
5401 gcttggaacc tcctgacatt gatgtttggc gaggcaagga cacagctgaa
5451 actgtagctg tgttcgaaga tccgtgggag tttttccgta aacaggaaga
5501 tcccaatcca cctaaattaa aaggaacatt atcaaaaata ggttcatcca
5551 taggtggagg gtctctctca ggagggaact tgagaagagc cgctgaaagt
5601 gttaacgaag attctatgaa atttaaactg tcgaccactg agcgcaacca
5651 gtacgaaaga attcggaaat caaaaggtga aacagcagct cgtgtgtact
5701 tacgcagcag gttctcttca tagtggtata tcaaccgccc actctaaaga
5751 tacggttttc accaaatatg ggtgagttca tatttcctag cttctggatt
5801 tgaagcaaac tcgggccgca gaggataaat gtcggaacga aagcgaggag
5851 cgagtaggcc ccagtgttat acgtgggtat ttcctacggc actgcggtgt