Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate 425 p6, Hsp70h, p61, CPm, CP, p18, p13, p20, and p23 genes, complete cds.
ACC No: AY995564
Dated: 2005-04-26 | Length: 7365 | CRC: -2132986392
!!NA_SEQUENCE 1.0
ID AY995564 standard; genomic RNA; VRL; 7365 BP.
XX
AC AY995564;
XX
SV AY995564.1
XX
DT 26-APR-2005 (Rel. 83, Created)
DT 26-APR-2005 (Rel. 83, Last updated, Version 1)
XX
DE Citrus tristeza virus isolate 425 p6, Hsp70h, p61, CPm, CP, p18, p13, p20,
DE and p23 genes, complete cds.
XX
KW .
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RP 1-7365
RA Roy G., Yokomi R.K., Ullman D.E.;
RT "Amino acid sequence variations associated with aphid transmissibility of
RT Citrus tristeza virus";
RL Unpublished.
XX
RN [2]
RP 1-7365
RA Roy G., Yokomi R.K., Ullman D.E.;
RT ;
RL Submitted (31-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of California at Davis, One Shields Avenue,
RL Davis, CA 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7365
FT /country="USA:Tulare county, California"
FT /db_xref="taxon:12162"
FT /mol_type="genomic RNA"
FT /organism="Citrus tristeza virus"
FT /isolate="425"
FT /isolation_source="aphid transmission during 1999 from a
FT naturally infected field tree"
FT CDS 12. .167
FT /codon_start=1
FT /product="p6"
FT /protein_id="AAY15704.1"
FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSPY
FT GTHATV"
FT CDS 173. .1957
FT /codon_start=1
FT /note="p65; similar to heat shock protein 70"
FT /product="Hsp70h"
FT /protein_id="AAY15705.1"
FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN
FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVTVEEFGTKSVP
FT VPYLSPLNNDLGLSVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT
FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSIVSVRLPTFA
FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG
FT MSETISIDQTALREIASVFINRTIDILTQVKVKSSMPESQSLKLVVVGGSSYLPGLLDT
FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV
FT AAAGSPIPFEGEQKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR
FT VPNDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSRYDYTGMPHPTRNLVKLSDYNV
FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM
FT GIVVSKVLRGSDLERIPL"
FT CDS 1881. .3488
FT /codon_start=1
FT /product="p61"
FT /protein_id="AAY15706.1"
FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG
FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV
FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT
FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK
FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER
FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD
FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL
FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD
FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD
FT VATSGFNLPYHGRLYNTS"
FT CDS 3463. .4185
FT /codon_start=1
FT /note="minor capsid protein; p27"
FT /product="CPm"
FT /protein_id="AAY15707.1"
FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG
FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT
FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL
FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ
FT GYEEATELLNLRDLGKYL"
FT CDS 4282. .4953
FT /codon_start=1
FT /note="capsid protein; p25"
FT /product="CP"
FT /protein_id="AAY15708.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
FT CDS 4919. .5422
FT /codon_start=1
FT /product="p18"
FT /protein_id="AAY15709.1"
FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE
FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL
FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL
FT FSAT"
FT CDS 5456. .5815
FT /codon_start=1
FT /product="p13"
FT /protein_id="AAY15710.1"
FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS
FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL
FT RNKRIQIPSLLPCDN"
FT CDS 5891. .6439
FT /codon_start=1
FT /product="p20"
FT /protein_id="AAY15711.1"
FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL
FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD
FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFAAYGILLQKG
FT TVATVCGQFDINLVSPSCV"
FT CDS 6522. .7151
FT /codon_start=1
FT /product="p23"
FT /protein_id="AAY15712.1"
FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI
FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP
FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH
FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI"
XX
SQ Sequence 7365 BP; 2001 A; 1381 C; 1785 G; 2198 T; 0 other;
AY995564 Length: 7365 May 3, 2005 09:01 Type: N Check: 3358 ..
1 acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt
51 ggtatagctg ttttttcggc ctttgccgga ctgattatca ttgttataac
101 gatttatcgg tgcacgacta agcctgttag gaacacttct ccttacggca
151 ctcacgccac tgtctaagcg gtatggtact tctgggttta gactttggta
201 ccacgttttc gacggtggct atggctacat cctctgagtt agttatactc
251 aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga
301 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg
351 gggagcctgg ttctttttac aaagatttga aacggtgggt tggttgcact
401 gcgaagaact accaaaccta cttacacaaa ctatcgcctt cctataaggt
451 gacggtggaa gagtttggaa ctaagagtgt gccagtccca tatttgtcac
501 ctctgaataa cgatttggga ctcagtgtcg ctttaccttt actaatcgct
551 tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag
601 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac
651 gagcttttac gcagcagagt atatcgatgt cgggttactc ttgcgtgtac
701 attattaacg aaccttcagc agccgcgtac tccactttac ctaagttgag
751 ttcggcagat aaatatttag ccgtttacga cttcggcggt gggactttcg
801 acgtctctat agttagcgtc agattgccta cgttcgccgt taggagttcg
851 ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga
901 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt
951 ctagtttaaa ggaagcttta tctcttcaaa ctgatccggt caaatatact
1001 gtaactcatc acggaatgag tgagacgata tcaattgatc aaacggcgtt
1051 gagggagata gcttcggtgt tcataaatcg aacgatagat atacttacgc
1101 aagttaaagt taagtctagt atgcccgaat cgcaaagttt aaagttagtg
1151 gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac
1201 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg
1251 tcgctagagg gtgtgcttta tatagtgagt gcttagatgg taggtccaag
1301 gccctactaa tagattgtat tacacatcat ttgtcggtta cgacgtttag
1351 cgcggactcg gtcgttgtcg cagcggccgg tagtccaatt ccttttgaag
1401 gagaacaaaa actcacgtta cgcaaatgcg ttagcacgtc taactatcaa
1451 gcaagaatgt tcgaaggaga ttacgaaaag gttttccgaa atgaacgtat
1501 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc
1551 ctaacgacgt tgagatgact ctcgtgacca aagtggactc aatgggtaaa
1601 gtggaatttt accttaaagg tccatctggt gaactagtca acgtgcaagg
1651 tacttcgcgt tacgattata ctggtatgcc tcaccccact agaaatttgg
1701 tgaagcttag cgattacaat gtaaactccg ccgctttagt tttagctttg
1751 acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga
1801 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa
1851 agaagtaccc gatcactcga aacgatatcg atgtcgtctc atcacgtatg
1901 gggatcgttg tttcgaaagt tttacgggga agcgatttgg aaagaatacc
1951 tctctgaatc aactcgaagt tttgatgaaa gaaacgtgtc gttggaccac
2001 actttgagtt cgggtgtggt cgtccgtagg cagagtcttt tgaatgcgcc
2051 tcaagggact tttgagaacg agttagcgct attgtataat tcggtggtga
2101 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca
2151 ggtatcgagg accgtaaggt gcctgacgaa ttaatatccg ttgacccgca
2201 cgaagtcgga tgtagattca cgttaaacga cgtggaatca tatctaataa
2251 gcaggggtga ggattccgct gatgtaacgg cggtcgagca ttcgtggtgt
2301 ttgagtaact cttgtggtag actattaagt tcgaccgaga tagatgctta
2351 caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga
2401 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa
2451 cactgcatga aagacgatga ttattttaat cttatcacac ctatgtttaa
2501 ttgtttggtg aaagtgctgg cgtcacttgg tttgttttat gagaaacata
2551 ctgacaatcc gctactgacc ggaatgctta tagagttttg cctagaaaat
2601 aaggtgtatt actctacttt taaagtaaat ctagacaacg ttagattgtt
2651 taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc
2701 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat
2751 ttcgtgctcg atttacctaa attgaatata cacgacacaa tggtggtggt
2801 gggtaatcaa atcagacagt tagagtacgt agtcgagagc gatgctttag
2851 acgatttatc tcaacacgtt gacatacgtt tagcagcgga caaccccgat
2901 ctacgcgttg atctgcgttg ggcagggatg tttgtctact acggtgttta
2951 tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc
3001 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg
3051 agtgccgtcg aagctttatt taatctagtg caaaaggtga acagggacat
3101 aaacgttaga cgtcagttca tgggacgtca cagtaaagtg gctttgcgac
3151 tgtatcgcaa cttaggtttg aggtttccac cgatctcttc agttaggtta
3201 ccggttcatc acggttactt atacgtcgat ttttacaaaa gagtacctga
3251 cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt
3301 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc
3351 aatcgactta gaagaggttc ttctagaaca tttagaggtc gaggcgcacg
3401 cggtgcgagc tcgcgtcata tgagcagaga cgtggcaact tccggtttta
3451 atttacctta tcatggcagg ttatacaaca cttcctaata ccgatgacaa
3501 agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat ccggatgtca
3551 ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc
3601 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt
3651 tactggtgaa cacttgaaat acgttatggt tactatggat gctttcttat
3701 tagaaaacta caagacgaaa acggaagatc tgttggttca cttagctatg
3751 atccaaaaga ggttgtgcac tacatccacg agcactaaaa ccaagttccg
3801 cgataaaggt tgtattagtt acgtgcaagg gggttcgcgg tataagttaa
3851 tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag
3901 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt
3951 gtgtatggct aggttgagac ccgacttata cgaaaataaa aggacgacta
4001 aagccgggac tccacattta aagggctatt tatcagccga ctttctttcg
4051 ggttctctcc cagggtactc cgaacatgaa cgaggcatca ttcttcgagc
4101 gtctgagtct atgttagcta gacgtcaagg ttacgaggag gcaaccgagc
4151 ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg
4201 taatattatt ataccatccc ttgagcgctg ctttaagggt cgttaattga
4251 cgactcttga tatatttact aggtttgaat tatggacgac gaaacaaaga
4301 aattgaagaa caaaaacaag gaaacgaaag aaggcgacga tgttgttgct
4351 gctgagtctt ctttcggttc cgtaaactta cacatcgatc cgactctgat
4401 aacgatgaac gatgtgcgtc agttgagtac tcaacagaat gctgctttga
4451 acagggactt atttcttgct ctgaaaggga agtatcctaa cttgcctgac
4501 aaagataagg actttcacat agctatgatg ttataccgtt tagcggttaa
4551 gagttcatca ttgcaaagtg atgatgacac cacgggcata acgtacactc
4601 gggagggtgt tgaagtagat ttgtctgaca aactttggac cgacatcgtg
4651 tataattcta agggtattgg taaccgaact aacgcccttc gagtctgggg
4701 tagaactaac gatgctcttt acttagcctt ttgtagacag aaccgcaatt
4751 tgagttatgg cggacgtccg ctagatgcag ggattccggc tgggtatcat
4801 tatttgtgtg cagatttctt gaccggagct ggcttgactg atttagaatg
4851 tgctgtgtac atacaagcta aagaacaatt gttgaaaaag cgaggggctg
4901 atgaggttgt agttactaat gtcaggcagc ttgggaaatt taacacacgt
4951 tgatctattg cgttccgatt cccggtttct atcgggatgg tggagtttca
5001 tcgtgaacgt gggtgatata attgtccggt tcgcgttaca cgttcctaat
5051 gaagatatgc tgaatagttt ttcagctata tcgaattgta cgattatagc
5101 ggatggtagt gctttactaa aggacaatac tgtggttgac cgtttagaaa
5151 gcatgaatcc tttggcttat ttgttaaaat tagcgaaaac gactactact
5201 atttgtttta ctatgtccaa taaggttctt tttggtacta ccaaatccga
5251 accacttagt tgtttagcca tcacgtcgga tcgagtttta ttcaaagtta
5301 ttatgggcgc taacgttgat gattctcgat gcggctgcag tatttggttt
5351 tacaacaatg gtacatttca aaacggattg acccgttgta ataatctcgt
5401 cactttgttt agcgcgactt agacacgaag tgaccgttcg gatttaattg
5451 ctgcgatgag tattcgacgc gtgtggttaa aggttatagc tgtaattaca
5501 gtgttgtggt acggtaagga accttctatt agtgaaggtt acaatgctct
5551 tatgaatgac gactttaaat ttatcgatac gcatttttct aacgtttctt
5601 atgctaagaa atgttacgat ttggctaatt tcgatttaga ttttttgcgc
5651 atcgttatca ttcctttgag tggtggcacg gcgaatgaat cgcgttctga
5701 tcgcactaac gtttcagaga ttgtcgaatc gcatgtaagc gaccgagaca
5751 gaatgcacat cttgttgcgt aataagcgga tccagattcc ttcgctctta
5801 ccttgcgata actagagtct actcagtagt acgtctacta gtataacgta
5851 ttaaacactt tagtgaggag ttttgtttga atcaaacaat atgcgagctt
5901 actttagtgt taacgattac ataagccttt tggctaaggt tggttcagtt
5951 gtggaacgtt tgtgcgatcc cagcgtaact ctcacggaag tgatggacga
6001 aattaatgat tttaactcgt ttctcgcttt ggtgcactct atgaagtcgg
6051 acatgaacgg cgatcatcag gatggtcacc atgagatggg tgaacataaa
6101 tctcggttgt tgtgcaatat agaggcgaaa ctgcgagtgc ttctcgacat
6151 cataagacgt cggtttactc gcgaaaaact gctctgtacc agtgctacag
6201 atgttgtggg cttcttcgtc gtgaggtaca tgagttctag tcacactagt
6251 ttcgaaaccg taatgcgaac ggaactgaag ttggtggtta aagctgtgct
6301 gtcggaattg tcccgcacgc ataaactaga ttttagcgag cgagcctttg
6351 cggcttacgg tatccttttg cagaagggca ccgtggcaac cgtttgcggt
6401 cagtttgaca ttaatttagt ttctccgtct tgcgtgtagg ttaatacgct
6451 tctcagaacg tatggttgta ttaactaact ttaattcgaa catatttatt
6501 gtttaaagtc tgtgagttac gatggatgat actagcggac aaactttcgt
6551 ttctgtgaac ctttctgacg aaagcaacac ggcaagcact aaagttgaaa
6601 acgtaaaatc ggaagcggat cgcttggagt ttttacgtaa aatgaatccc
6651 tttattattg acgctctggt gcggaaaacc aattatcagg gtgctcgctt
6701 tcgcgcaaga ataataggag tgtgcgtgga ttgtggtaga aaacacgaca
6751 aggcgctcaa gactgaacgt aagtgtaagg tcaacaatac gcaatctcag
6801 aacgaggtgg cgcatatgtt gatgcacgat cccgttaagt atttgaacaa
6851 aagaaaggct agagcctttt ctaacgcaga gatgtttgcg attgaattgg
6901 ttttgtacac caaggaaagg caattggcgg tcgatttagc cgctgaaagg
6951 gagaagacga gactggctcg tagacaccca atacgttctc cggaagaaac
7001 tccggaacat tataaattcg gtatgactgc taaggcaatg ttaccggaca
7051 tcaacgccgt agacgttggt gataacgagg aaacttcgtc ggagtaccca
7101 gtgagtctga gtgtttctgg cggagttctc cgtgaacacc acttcatctg
7151 attgaagtgg acggaataag ttccttgcgg aactttaagt cgggttggta
7201 aaaacccttt atgatggtga tgtatcacta gacaataacc ggatgggtaa
7251 agtctttaaa atgatcgagg ggaaaattaa ccgtatcctc tcgttggtct
7301 aagctcccac agagtggtag tggtctcaag tgaggcttaa cgtatgcgtg
7351 aaccaaagaa gttct