Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate 81P p6, Hsp70h, p61, CPm, CP, p18, p13, p20, and p23 genes, complete cds.
ACC No: AY995567
Dated: 2005-04-26 | Length: 7368 | CRC: -560703445
!!NA_SEQUENCE 1.0
ID AY995567 standard; genomic RNA; VRL; 7368 BP.
XX
AC AY995567;
XX
SV AY995567.1
XX
DT 26-APR-2005 (Rel. 83, Created)
DT 26-APR-2005 (Rel. 83, Last updated, Version 1)
XX
DE Citrus tristeza virus isolate 81P p6, Hsp70h, p61, CPm, CP, p18, p13, p20,
DE and p23 genes, complete cds.
XX
KW .
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RP 1-7368
RA Roy G., Yokomi R.K., Ullman D.E.;
RT "Amino acid sequence variations associated with aphid transmissibility of
RT Citrus tristeza virus";
RL Unpublished.
XX
RN [2]
RP 1-7368
RA Roy G., Yokomi R.K., Ullman D.E.;
RT ;
RL Submitted (31-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of California at Davis, One Shields Avenue,
RL Davis, CA 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7368
FT /country="USA:near McFarland, California"
FT /db_xref="taxon:12162"
FT /mol_type="genomic RNA"
FT /organism="Citrus tristeza virus"
FT /isolate="81P"
FT /isolation_source="aphid transmission during 2001 from a
FT naturally infected field tree which was a Fukumoto navel on
FT Troyer rootstock"
FT CDS 12. .167
FT /codon_start=1
FT /product="p6"
FT /protein_id="AAY15731.1"
FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSSY
FT GTHATV"
FT CDS 173. .1957
FT /codon_start=1
FT /note="p65; similar to heat shock protein 70"
FT /product="Hsp70h"
FT /protein_id="AAY15732.1"
FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN
FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVTVEEFGTKSVP
FT VPYLSPLNNDLGLNVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT
FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSVVSVRLPTFA
FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG
FT MSETISIDQTALREIASVFINRTIDILTQVKVKSSMPESQSLKLVVVGGSSYLPGLLDT
FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV
FT AAAGSPIPFEGERKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR
FT VPKDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSHYDYTGMPHPTRNLVKLSDYNV
FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM
FT GIVVSKVLRGSDLERIPL"
FT CDS 1881. .3488
FT /codon_start=1
FT /product="p61"
FT /protein_id="AAY15733.1"
FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG
FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV
FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT
FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK
FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER
FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD
FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL
FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD
FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD
FT VATSGFNLPYHGRLYNTS"
FT CDS 3463. .4185
FT /codon_start=1
FT /note="minor capsid protein; p27"
FT /product="CPm"
FT /protein_id="AAY15734.1"
FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG
FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT
FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL
FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ
FT GYEEATELLNLRDLGKYL"
FT CDS 4285. .4956
FT /codon_start=1
FT /note="capsid protein; p25"
FT /product="CP"
FT /protein_id="AAY15735.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
FT CDS 4922. .5425
FT /codon_start=1
FT /product="p18"
FT /protein_id="AAY15736.1"
FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE
FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL
FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL
FT FSAT"
FT CDS 5459. .5818
FT /codon_start=1
FT /product="p13"
FT /protein_id="AAY15737.1"
FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS
FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL
FT RNKRIQIPSLLPCDN"
FT CDS 5894. .6442
FT /codon_start=1
FT /product="p20"
FT /protein_id="AAY15738.1"
FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL
FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD
FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFTAYGILLQKG
FT TVATVCGQFDINLVSPSCV"
FT CDS 6525. .7154
FT /codon_start=1
FT /product="p23"
FT /protein_id="AAY15739.1"
FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI
FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP
FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH
FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI"
XX
SQ Sequence 7368 BP; 2005 A; 1381 C; 1784 G; 2198 T; 0 other;
AY995567 Length: 7368 May 3, 2005 09:01 Type: N Check: 3870 ..
1 acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt
51 ggtatagctg tgttttcggc ctttgccgga ctgattatca ttgttataac
101 gatttatcgg tgcacgacta agcctgttag gaacacttct tcttacggca
151 ctcacgccac tgtctaagcg gtatggtact tctgggttta gactttggta
201 ccacgttttc gacggtggct atggctacat cctctgagtt agttatactc
251 aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga
301 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg
351 gggagcctgg ttctttttac aaagatttga aacggtgggt tggttgcact
401 gcgaagaact accaaaccta cttacacaaa ctatcgcctt cctataaggt
451 gacggtggaa gagtttggaa ctaagagtgt gccagtccca tatttgtcac
501 ctctgaataa cgatttggga ctcaatgtcg ctttaccttt actaatcgct
551 tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag
601 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac
651 gagcttttac gcagcagagt atatcgatgt cgggttactc ttgcgtgtac
701 attattaacg aaccttcagc agccgcatac tccactttac ctaagttgag
751 ttcggcagat aaatatttag ccgtttacga cttcggcggt gggactttcg
801 acgtctctgt agttagcgtc agattgccta cgttcgccgt taggagttcg
851 ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga
901 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt
951 ctagtttaaa ggaagcttta tctcttcaaa ctgatccggt caaatatact
1001 gtaactcatc acggaatgag tgagacgata tcaattgatc aaacggcgtt
1051 gagggagata gcttcggtgt tcataaatcg aacgatagat atacttacgc
1101 aagttaaagt taagtctagt atgcccgaat cgcaaagttt aaagttagtg
1151 gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac
1201 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg
1251 tcgctagagg gtgtgcttta tatagtgagt gcttagatgg taggtccaag
1301 gccctactaa tagattgtat tacacatcat ttgtcggtta cgacgtttag
1351 cgcggactcg gtcgttgtcg cagcggccgg tagtccaatt ccttttgaag
1401 gagaacgaaa actcacgtta cgcaaatgcg ttagcacgtc taactatcaa
1451 gcaagaatgt ttgaaggaga ttacgaaaag gttttccgaa atgaacgtat
1501 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc
1551 ctaaagacgt tgaaatgact ctcgtgacca aagtggactc aatgggtaaa
1601 gtggaatttt accttaaagg tccatctggt gaactagtca acgtgcaagg
1651 tacttcgcat tacgattata ctggtatgcc tcaccccact agaaatttgg
1701 tgaagcttag cgattacaat gtaaactccg ccgctttagt tttagctttg
1751 acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga
1801 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa
1851 agaagtaccc gatcactcga aacgatatcg atgtcgtctc atcacgtatg
1901 gggatcgttg tttcgaaagt tttacgggga agcgatttgg aaagaatacc
1951 tctctgaatc aactcgaagt tttgatgaaa gaaacgtgtc gttggaccac
2001 actttgagtt cgggtgtggt cgtccgtagg cagagtcttt tgaatgcgcc
2051 tcaagggact ttcgagaacg agttagcgct attgtataat tcggtggtga
2101 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca
2151 ggtatcgagg accgtaaggt gcctgacgaa ttaatatccg ttgacccgca
2201 cgaagtcgga tgtagattca cgttaaacga cgtggaatca tatctaataa
2251 gcaggggcga ggattccgct gatgtaacgg cggtcgagca ttcgtggtgt
2301 ttgagtaact cttgtggtag actattaagt tcgaccgaga tagatgctta
2351 caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga
2401 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa
2451 cactgcatga aagacgatga ttattttaat cttatcacac ctatgtttaa
2501 ttgtttggtg aaagtgctgg cgtcacttgg tttgttttat gagaaacata
2551 ctgacaatcc gctactgacc ggaatgctta tagagttttg cctagaaaat
2601 aaggtgtatt actctacttt taaagtaaat ttagacaacg ttagattgtt
2651 taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc
2701 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat
2751 tttgtgctcg atttacctaa attgaatata cacgacacaa tggtggtggt
2801 gggtaatcaa atcagacagt tagagtacgt agtcgagagc gatgctttag
2851 acgatttatc tcaacacgtt gacatacgtt tagcagcgga caaccccgat
2901 ctacgcgttg atctgcgttg ggcagggatg tttgtctact acggtgttta
2951 tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc
3001 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg
3051 agtgccgtcg aagctttatt taatctagtg caaaaggtga acagggacat
3101 aaacgttaga cgtcagttca tgggacgtca cagtaaagtg gctttgcgac
3151 tgtatcgcaa cttaggtttg aggtttccac cgatctcttc agttaggtta
3201 ccggttcatc acggttactt atacgtcgat ttttacaaaa gagtacctga
3251 cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt
3301 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc
3351 aatcgactta gaagaggttc ttctagaaca tttagaggtc gaggcgcacg
3401 cggtgcgagc tcgcgtcata tgagcagaga cgtggcaact tccggtttta
3451 atttacctta tcatggcagg ttatacaaca cttcctaata ccgatgacaa
3501 agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat ccggatgtca
3551 ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc
3601 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt
3651 tactggtgaa cacttgaaat acgttatggt tactatggat gctttcttat
3701 tagaaaacta caagacgaaa acggaagatc tgttggttca cttagctatg
3751 atccaaaaga ggttgtgcac tacatccacg agcactaaaa ccaagttccg
3801 cgataaaggt tgtattagtt acgtgcaagg gggttcgcga tataagttaa
3851 tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag
3901 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt
3951 gtgtatggct aggttgagac ccgacttata cgaaaataaa aggacgacta
4001 aagccgggac tccacattta aagggctatt tatcagccga ctttctttcg
4051 ggttctctcc cagggtactc cgaacatgaa cgaggcatca ttcttcgagc
4101 gtctgagtct atgttagcta gacgtcaagg ttacgaggag gcaaccgagc
4151 ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg
4201 taatattatt attataccat cccttgagcg ctgctttaag ggtcgttaat
4251 tgacgactct tgatatattt actaggtttg aattatggac gacgaaacaa
4301 agaaattgaa gaacaaaaac aaggaaacga aagaaggcga cgatgttgtt
4351 gctgctgagt cttctttcgg ttccgtaaac ttacacatcg atccgactct
4401 gataacgatg aacgatgtgc gtcagttgag tactcaacag aatgctgctt
4451 tgaacaggga cttatttctt gctctgaaag ggaagtatcc taacttgcct
4501 gacaaagata aggactttca catagctatg atgttatacc gtttagcggt
4551 taagagttca tcattgcaaa gtgatgatga caccacgggc ataacgtaca
4601 ctcgggaggg tgttgaagta gatttgtctg acaaactttg gaccgacatc
4651 gtgtataatt ctaagggtat tggtaaccga actaacgccc ttcgagtctg
4701 gggtagaact aacgatgctc tttacttagc cttttgtaga cagaaccgca
4751 atttgagtta tggcggacgt ccgctagatg cagggattcc ggctgggtat
4801 cattatttgt gtgcagattt cttgaccgga gctggcttga ctgatttaga
4851 atgtgctgtg tacatacaag ctaaagaaca attgttgaaa aagcgagggg
4901 ctgatgaggt tgtagttact aatgtcaggc agcttgggaa atttaacaca
4951 cgttgatcta ttgcgttccg attcccggtt tctatcggga tggtggagtt
5001 tcatcgtgaa cgtgggtgat ataattgtcc ggttcgcgtt acacgttcct
5051 aatgaagata tgctgaatag tttttcagct atatcgaatt gtacgattat
5101 agcggatggt agtgctttac taaaggacaa tactgtggtt gaccgtttag
5151 aaagcatgaa tcctttggct tatttgttaa aattagcgaa aacgactact
5201 actatttgtt ttaccatgtc caataaggtt ctttttggta ctaccaaatc
5251 cgaaccactt agttgtttag ctatcacgtc ggatcgagtt ttattcaaag
5301 ttattatggg cgctaacgtt gatgattctc ggtgcggctg cagtatttgg
5351 ttttacaaca atggtacgtt tcaaaacgga ttgacccgtt gtaataatct
5401 cgtcactttg tttagcgcga cttagacacg aagtgaccgt tcggatttaa
5451 ttgctgcgat gagtattcga cgcgtgtggt taaaggttat agctgtaatt
5501 acagtgttgt ggtacggtaa ggaaccttct attagtgaag gttacaatgc
5551 tcttatgaat gacgacttta aatttatcga tacgcatttt tctaacgttt
5601 cttatgctaa gaaatgttac gatttggcta atttcgattt agactttttg
5651 cgcatcgtta tcattccttt gagtggtggc acggcgaatg aatcgcgttc
5701 tgatcgcact aacgtttcag agattgtcga atcgcatgta agcgaccgag
5751 acagaatgca catcttgttg cgtaataagc ggatccagat tccttcgctc
5801 ttaccctgcg ataactagag tctactcagt agtacgtcta ctagtataac
5851 gtattaaaca ctttagtgag gagttttgtt tgaatcaaac aatatgcgag
5901 cttactttag tgttaacgat tacataagcc ttttggctaa ggttggttca
5951 gttgtggaac gtttgtgcga tcccagcgta actctcacgg aagtgatgga
6001 cgaaattaat gattttaact cgtttctcgc tttggtgcac tctatgaagt
6051 cggacatgaa cggcgatcat caggatggtc accatgagat gggtgaacat
6101 aaatctcggt tgttgtgcaa tatagaggcg aaactgcgag tgcttctcga
6151 catcataaga cgtcggttta ctcgcgaaaa actgctctgt accagtgcta
6201 cagatgttgt gggcttcttc gtcgtgaggt acatgagttc tagtcacact
6251 agtttcgaaa ccgtaatgcg aacggaactg aagttggtgg ttaaagctgt
6301 gctgtcggaa ttgtcccgca cgcataaact agattttagc gagcgagcct
6351 ttacggctta cggtatcctt ttgcagaagg gcaccgtggc aaccgtttgc
6401 ggtcagtttg acattaattt agtttctccg tcttgcgtgt aggttaatac
6451 gcttctcaga acgtatggtt gtattaacta actttaattc gaacatattt
6501 attgtttaaa gtctgtgagt tacgatggat gatactagcg gacaaacttt
6551 cgtttctgtg aacctttctg acgaaagcaa cacggcaagc actaaagttg
6601 aaaacgtaaa atcggaagcg gatcgcttgg agtttttacg taaaatgaat
6651 ccctttatta ttgacgctct ggtgcggaaa accaattatc agggtgctcg
6701 ctttcgcgca agaataatag gagtgtgcgt ggattgtggt agaaaacacg
6751 acaaggcgct caagactgaa cgtaagtgta aggtcaacaa tacgcaatct
6801 cagaacgagg tggcgcatat gttgatgcac gatcccgtca agtatttgaa
6851 caaaagaaag gctagagcct tttctaacgc agagatgttt gcgattgaat
6901 tggttttgta caccaaggaa aggcaattgg cggtcgattt agccgctgaa
6951 agggagaaga cgagactggc tcgtagacac ccaatacgtt ctccggaaga
7001 aactccggaa cattataaat tcggtatgac tgctaaggca atgttaccgg
7051 acatcaacgc cgtagacgtt ggtgataacg aggaaacttc gtcggagtac
7101 ccagtgagtc tgagtgtttc tggcggagtt ctccgtgaac accacttcat
7151 ctgattgaag tggacggaat aagttccttg cggaacttta agtcgggttg
7201 gtaaaaaccc tttatgatgg tgatgtatca ctagacaata accggatggg
7251 taaagtcttt aaaatgatcg aggggaaaat taaccgtatc ctctcgttgg
7301 tctaagctcc cacagagtgg tagtggtctc aagtgaggct taacgtatgc
7351 gtgaaccaaa gaagttct